n 1.... 3 .3, 'usoiv 5:!- 31..., ‘ 4s .33 M " _, LIBRARY 13 , Michigan State 2: CO7 _ University This is to certify that the dissertation entitled ACOUSTICAL AND NEMATODE COMMUNITY ASSESSMENT FOR ECOSYSTEM CHARACTERIZATION presented by MARISOL ANDREA QUINTANILLA TORNEL has been accepted towards fulfillment of the requirements for the PhD . degree In Entomology Z/// My Mayo, Professor’s Signature May 14, 2009 Date MSU is an Affinnativa Action/Equal Opportunity Employer PLACE IN RETURN BOX to remove this checkout from your record. To AVOID FINES return on or before date due. MAY BE RECALLED with earlier due date if requested. DATE DUE DATE DUE DATE DUE 5/08 K:IProj/Aoc&Pres/ClRC/DateDue.lndd TITLE: ACOUSTICAL AND NEMATODE COMMUNITY ASSESSMENT FOR ECOSYSTEM CHARACTERIZATION By Marisol Andrea Quintanilla Tornel A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Entomology 2009 ABSTRACT ACOUSTICAL AND NEMATODE COMMUNITY ASSESSMENT FOR ECOSYSTEM CHARACTERIZATION By Marisol Andrea Quintanilla Tornel Ecosystems with different levels and types of human management were compared and characterized using nematode community structure methodologies and acoustical recordings. Conventional tillage, no-till, bio-based (organic), early and mid-successional fields with a history of tillage and mature deciduous forest sites were compared using these two methodologies. These methodologies were used to characterize the biological and physical aspects of these ecosystems with different levels of human management. For the nematode community structure analysis, nematodes naturally found in the soils from the conventional tillage, no-till, bio-based, successional fields and deciduous forest systems from Kellogg Biological Station Long Term Ecological Research (KBS/LTER) were identified to the lowest possible taxon and the results analyzed for taxon biodiversity, evenness, ecosystem stability and nutrient enrichment. Multivariate canonical correspondence analyses were performed in order to find associations between nematode taxa, ecosystems and soil characteristics. The results were compared and images of the nematodes identified can be found at http://www.nemasoil.com. As expected, the greatest biodiversity, evenness and ecosystem stability were often found in the deciduous forest and field succession ecosystems, and the lowest levels of the same parameters were most often found in the no-till and conventionally-tilled ecosystems. The acoustical methodologies were used to measure both biological and physical characteristics of ecosystems. The physical characteristics, such as soil aggregate stability, of soils with different levels of human management were measured with acoustical methods and the results were compared to conventional methods. Soil aggregates from conventional tillage, no-till, and native systems were immersed in water and the sounds of the rapid hydration were recorded with hydrophones for 30 seconds. The results were as expected and agreed with conclusions arrived at using conventional methods. The greatest stability and lowest sound intensity was found in the native ecosystems and the greatest sound intensity and lowest aggregate stability was found in the conventionally-tilled ecosystems, with the no-till ecosystems being intermediate. Acoustical recordings were used additionally to characterize the biological insect sounds from the same ecosystems used previously at KBS/LTER. The native ecosystems had significantly more insect sounds, especially at night, compared to any of the human-managed ecosystems. In the native ecosystems, the sounds were in a wave cubic regression form, with the sounds increasing and decreasing at regular time intervals. Additionally, acoustics were used to determine the biological activity of compost, using water as an activating agent. In conclusion, our methods showed that both nematode community structure methods and acoustical methods can be effectively used to characterize ecosystems. ACKNOWLEDGMENTS Support for this research was provided by a Michigan Agricultural Experimental Station assistantship, a MOTT Fellowship, and the NSF Long-Term Ecological Research Program at the Kellogg Biological Station. I would also like to specially thank Dr. George Bird for his incredible help, support and patience in guiding my scientific endeavors. I would like to thank Dr. Gage for the help in analysis and formation of my dissertation. Also I would like to thank DiFonzo for her careful revisions of my manuscripts, to Dr. Robertson and Dr. Smucker for their guidance, revisions and participation in my committee. Also to Dr. Delfosse for guidance in presenting this research in the 2008 Entomological Society of America meetings. I would like to thank Dr. Ayers and Dr. Miller for being good and supportive teachers. John Davenport, Fred Warner, Belinda Roman, Cassandra Bates, Leslie Schumacher, Chris Chen, Claudio Quintanilla, Goran and Valera Jotanovic for taking an active part in contributing to my research. And to my family (Marisol Tornel, Valera Pascual, Valeria Tornel, Daniel Tornel, Jobita Hausdorf, y Carolina Quintanilla) for supporting me in my PhD research, studies and life. Finally I would like to acknowledge the guidance, help and love of the Creator in my life and academic endeavors iv TABLE OF CONTENTS LIST OF TABLES ........................................................................... vii LIST OF FIGURES .......................................................................... x INTRODUCTION ............................................................................ 1 CHAPTER 1: IMPACT OF TILLAGE ON ACOUSTICAL SIGNATURES DURING RAPID HYDRATION OF AIR-DRIED SOIL AGGREGATES ...... 6 Abstract ............................................................................... 6 Introduction ......................................................................... 7 Materials and Methods ........................................................... 11 Results ................................................................................ 16 Discussion ........................................................................... 20 Conclusions ......................................................................... 30 Tables ................................................................................. 32 Figures ............................................................................... 35 References .......................................................................... 42 CHAPTER 2: NEMATODE COMMUNITY STRUCTURE OF SOIL FROM ALTERNATIVE MANAGEMENT AND NATURAL ECOSYSTEMS ........... 46 Abstract .............................................................................. 46 Introduction ......................................................................... 48 Materials and Methods ........................................................... 51 Results ............................................................................... 55 Discussion ........................................................................... 68 Tables ................................................................................. 90 Figures ............................................................................... 113 References .......................................................................... 121 CHAPTER 3: TEMPORAL DYNAMICS OF ACOUSTICAL SIGNATURES ASSOCIATED WITH ALTERNATIVE MANAGEMENT AND NATURAL ECOSYSTEMS .............................................................................. 131 Abstract .............................................................................. 131 Introduction ......................................................................... 1 32 Materials and Methods ........................................................... 136 Results ............................................................................... 1 38 Discussion ........................................................................... 142 Tables ................................................................................. 146 Figures ............................................................................... 147 References .......................................................................... 164 CHAPTER 4: IMPACT OF MICROWAVES AND WATER ON ACOUSTICAL SIGNATURES OF A COMPOST ...................................................... 166 Abstract .............................................................................. 166 Introduction ......................................................................... 167 Materials and Methods ........................................................... 169 Results ............................................................................... 171 Discussion ........................................................................... 171 Tables ................................................................................. 174 Figures ............................................................................... 175 References .......................................................................... 179 CONCLUSION .............................................................................. 1 83 APPENDICES .............................................................................. 188 vi LIST OF TABLES Table 1.1 Soil collection locations, managements, carbon (%) and bulk density of the six soil air-dried aggregates sets used in this research ....................... 32 Table 1.2 Soil collection locations, site establishment dates, management descriptions, and taxonomy of the of the six soils aggregate sets used in this research ........................................................................................... 33 Table 1.3 Matlab code for computation of the average Power Spectral Density (acoustical intensity) for 1 kHz frequency bins (plus total) from a .wav file segment ........................................................................................... 34 Table 2.1 Description and abbreviations for the ecosystems used in this dissertation. The ecosystems are in the Kellogg Biological Station Long Term Ecological Research (KBS/LTER) project, Hickory Comers, Michigan. Each replication plot consists of one hectare. The agricultural and the old field succession established in 1989 (early succession) have six replications each (six one-hectare plots). The deciduous forest and the mid-succession (KBS/LTER treatment SF) have three one hectare replications each .............................. 90 Table 2.2 Nematode community structure indicator formulae used for descriptive, comparative and temporal analysis of ecosystem biodiversity, evenness, abundance, maturity, and enrichment of six ecosystems at KBS/LTER, Hickory Corners, Michigan .......................................................................................... 91 Table 2.3 Nematode taxa recovered from the deciduous forest ecosystem at KBS/LTER, Hickory Corners Michigan. Table contains nematode Taxa, Oligocheates and Tardigrades densities and frequencies in 29 samples from three deciduous forest sites at KBS/LTER ............................................... 93 Table 2.4 Mid-succession (abandoned in ~1967) ecosystem characterization consisting of: Nematode Taxa, Oligocheates and Tardigrades densities and frequencies in 4 samples from succession sites at KBS/LTER, Hickory Corners, Michigan .......................................................................................... 96 Table 2.5 Early succession (last tilled in spring of 1989 and occasional burning) ecosystem characterization consisting of: Nematode Taxa, Oligocheates and Tardigrades densities and frequencies in 12 samples from six field old field succession sites at KBS/LTER, Hickory Corners, Michigan............................. 98 vii Table 2.6 No Till system characterization consisting of: Nematode Taxa, Oligocheates and Tardigrades densities and frequencies in 18 samples from six no-till cropping sites at KBS/LTER, Hickory Corners, Michigan ................... 101 Table 2.7 Bio-based system characterization consisting of Nematode Taxa, Oligocheates and Tardigrades densities and frequencies in 18 samples from six bio-based agricultural cropping sites at KBS/LTER, Michigan ..................... 103 Table 2.8 Conventional Tillage system characterization consisting of: Nematode Taxa, and Oligocheates densities and frequencies in 18 samples from six conventionally tilled sites at KBS/LTER, Hickory Corners, Michigan ............ 106 Table 2.10 Index of similarity (Sorensen 1948). Based on the presence or absence of taxa in six ecosystems at KBS/LTER, Hickory Comers, Michigan..108 Table 2.11 Nematode community structure, biodiversity, evenness and ecosystem maturity (Table 2) analysis table for September 25, 2007 sample date at KBS/LTER with means, standard errors (SE), analysis of variance (AOV) and non-parametric mood median (MM) test ........................................... 109 Table 2.12 Nematode community structure and biodiversity (Table 2) analysis Table for December 12, 2007 sampling date at KBS/LTER with means, standard errors (SE), and analysis of variance (AOV) ............................................ 110 Table 2.13 Nematode Community Structure and Biodiversity (Table 2) Analysis Table for September 25, 2008 sampling date at KBS/LTER: with Means, Standard Errors (SE), and Analysis of Variance (AOV) .............................. 111 Table 2.14 Mean daily temperatures and precipitation for Kellogg Biological Station, Hickory Corners Michigan for the two weeks prior to three soil sampling dates ............................................................................................... 112 Table 3.1 Sound recording sampling times, dates and sunset, dusk, dawn and sunrise times at Kellogg Biological Station/Long Term Ecological Research, Michigan in 2007 ............................................................................... 146 Table 4.1 Matlab code to compute average Power Spectral Density (PSD, watts/kHz) for 1 kHz frequency bins (plus total) from a .wav file segment. The last calculation (Tab (i,12)) is the sum for all 11 kHz levels ............................... 174 viii LIST OF FIGURES Figure I.1. Organization and objectives model of the Dissertation of Marisol Quintanilla ........................................................................................ 4 Figure 1.1 a-d: Spectrograms of rapid water hydration of soil aggregates from three different soils: a) Hoytville, Ohio continuous till, b) Wooster, Ohio native forest, c) KBS, Hickory Corners, Michigan native soil and d) background sound with no soil aggregates ............................................................................ 35 Figure 1.2 Relationship among Power Spectral Density (acoustical intensity, sum of kHz frequency levels 3-11) of soil aggregates from three soil/management systems: a native succession at the Kellogg Biological Station (KBS), Hickory Comers; Michigan, a conventionally-tilled soil from Hoytville, Ohio; and a native forest soil from Wooster, Ohio. Samples were immersed in water (H20), 50 g/L Na-Hexametaphosphate (NaHmP), or 5mM CaSO4. Error bars indicate standard error of the mean of four replicate aggregates ............ 36 Figure 1.3 Relationship between Power Spectral Density Mean (acoustical intensity, sum of kHz 2-11 frequency levels) of rapidly hydrated (immersed in water) soil aggregates and six soil/management systems: native succession at KBS (Hickory Corners, Michigan); conventionally tilled and no tilled soil from Hoytville (Ohio); and native forest, no-till and conventionally tilled soil from Wooster (Ohio). Error bars indicate standard error intervals from the mean of 30 replicates. Letters represent significant difference using 95 % confidence intervals for the mean ......................................................................... 37 Figure 1.4 Relationship between Power Spectral Density (acoustic intensity), frequency (kHz level 2 — kHz level 11) and six soil/management systems (Hoytville Ohio tilled and no-till, KBS, Hickory Corners Michigan native soil and Wooster Ohio native, no—till and tilled soil) .............................................. .38 Figure 1.5 Relationship between visual assessment of soil aggregate slaking in water (Relative Stability: 1.0= no slaking and 6.0= complete disintegration when immersed for 30 seconds). Graphs bars represent the means (soil/management systems= 6, replications=30) and 95% confidence intervals ........................ 39 Figure 1.6 Relationship between air bubbler tube size (1= small 0.3mm, 5= large 1cm) and Power Spectral Densities (sound intensity) from kHz 1-3 levels sound frequency produced by air bubbles in water. KHz 4-11 had low values and could not be seen in the graph .............................................................. 40 ix Figure 1.7 Relationship between air bubbler tube size (1= small 0.3mm, 5= large 10m) and Power Spectral Density (sound intensity). Air bubbles of differing sizes were released in water and the sounds recorded ............................... 41 Figure 2.1 Canonical Correspondence Analysis Biplot. The sites are found in Kellogg Biological Station, Hickory Corners, Michigan. The sites were conventionally tilled, no-till and no—input (bio-based) agricultural ecosystems, deciduous forest, early and mid-succession fields. The variables represent percent soil elemental carbon (C), percent soil elemental nitrogen (N), soil bulk density (BD) and pH ......................................................................... 113 Figure 2.2 Nematodes per 100 cm3 (100 cc) of soil, and standard error intervals for trophic groups (Ba=bacterievores, Ca= Carnivores, Fu=fungivores, He=Herbivores, Om=Omnivores, UnlD=Unidentified nematodes), in five ecosystems at KBS/LTER, Michigan. Soil sampled September 25, 2007.... 116 Figure 2.3 Mean Number of Nematodes per 100 cm3 (100 cc) of soil, separated by trophic group (Ba=bacterievores, Ca= Carnivores, Fu=fungivores, He=Herbivores, Non-Nem=Non-Nematodes (Oligocheates and Tardigrades), Om=Omnivores, UnlD=Unidentified nematodes) on December 12, 2007. Error bars represent standard error from the mean .......................................... 117 Figure 2.4 Mean Number of Nematodes per 100 cm3 of soil, and standard errors for trophic groups (Ba=bacterievores, Ca= Carnivores, Fu=fungivores, He=Herbivores, Om=Omnivores, Non-Nem=Non-Nematodes (Oligocheates and Tardigrades), and UnlD=Unidentified nematodes), in five ecosystems at KBS/LTER, Michigan. Soil sampled September 25, 2008 ........................ 118 Figure 2.5 Mean Number of Nematodes per 100 cm3 of soil, and standard errors for trophic groups (bacterievores, carnivores, fungivores, herbivores, omnivores, non-nematodes (Oligocheates and Tardigrades), and unidentified nematodes), in five ecosystems (deciduous forest, succession abandoned last tilled circa 1955 (mid-succession) and last tilled in 1989 (early succession), and no-till, bio-based (organic) and conventionally tilled agricultural cropping systems) at KBS/LTER, Michigan. Three sampling dates combined September 25, 2008, December 12, 2007 and September 25, 2008 ............................................................ 119 Figure 2.6 Nematode families associated with five soil systems at KBS/LTER, Michigan in 2007 and 2008 ................................................................. 120 Figure 3.1 Aerial image of the Kellogg Biological Station/Long Term Ecological Research site at Hickory Corners, Michigan (httpzliwww.lter.kbs.msu.edu/maps/images/allLTERsites.jpg). Treatments (T) used: T1= conventional tilled crop rotation, T4= no-input (organic) crop rotation, T7= early succession last tilled in 1989 and occasionally burned, SF= mid- succession last tilled circa 1955, DF= mature deciduous forest, CF = mature coniferous forest. .............................................................................. 147 Figure 3.2 Photographic image of recording equipment used for acoustical recordings ....................................................................................... 148 Figure 3.3 Acoustical recording equipment in the deciduous forest, Kellogg Biological Station, Hickory Corners, Michigan ......................................... 148 Figures 3.4a-c Acoustic characterization sonograms of deciduous forest, early succession, and conventionally tilled corn/soybean/wheat crop rotation at 21 :20, August 29, 2007. The sounds were recorded at Kellogg Biological Station, Michigan. The x axis represents 0-30 seconds in time and the y axis represents frequencies of 0-11 kHz. Color intensity indicates sound intensity. Cool blues and greens indicate lowest intensity, yellow medium and the highest sound intensity is orange, and red .................................................................. 149 Figure 3.5 Total power spectral density (sum power spectral density (PSD) of the frequency levels 2-11 kHz) for recordings of July and August 2007 during sunrise, noon, sundown, and midnight at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Corners, Michigan. Error represents 95% confidence interval from the mean ................................................. 150 Figure 3.6 Total sound power spectral density (PSD) of frequencies 1-11 kHz for August 22-26, 2005 sound recordings at the Kellogg Biological Station, Long Term Ecological Research station at Hickory Corners, Michigan. The ecosystems recorded were: deciduous forest, coniferous forest, no-input (organic) crop rotation, and conventionally tilled crop rotation. Errors represent 95 % confidence intervals from the mean. .............................................. 151 Figure 3.7 Deciduous forest total sound power spectral density (PSD watt/kHz plot of the frequency levels 2-11 kHz) for recordings of July and August 2007 from 20:00-22:20 at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Corners, Michigan. Each dot represents the sound PSD of one sample. The sounds PSD increase exponentially as the evening progresses in late August and early September ..................................... 152 Figure 3.8 Deciduous forest total sound power spectral density (sum power spectral density (PSD watt/kHz) plot of the frequency levels 2-11 kHz) for recordings of July and August 2007 from 6:00-00:00 at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Corners, Michigan. Each dot represents the sound PSD of one sample. The sounds PSD increase exponentially as the evening progresses in late August and early September. The sounds are close to 0 in the morning and noon in both July and August...153 xi Figure 3.9 Deciduous forest total sound power spectral density (sum power spectral density (PSD watt/kHz) plot of the frequency levels 2-11 kHz) for recordings of July and August 2006 from 6:00-00:00 at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Corners, Michigan. Each dot represents the sound PSD of one sample. The sounds PSD increase exponentially as the evening progresses in late August and early September. The sounds are close to 0 in the morning and noon in both July and August... 154 Figure 3.10 Cubic regression fit of the relationship of time and sound power spectral density (PSD) in the mid-succession with history of tillage. The recordings were done in the evenings of July 23 and August 22, 2007. For mid- succession with history of tillage in 2007, the sound produced in July 23, 2007 were significantly different from those of August 22, 2007 (p = 0.001).‘ At both dates, time effectively (p< 0.001) predicted the insect sound intensity. The later in the evening the louder the sounds (regression analysis, analysis of variance p < 0.001, R2 = 53.7%) .......................................................................... 155 Figure 3.11 Cubic regression fit of the relationship between time and sound Power Spectral Density (PSD) in a mid-succession field last tilled in circa 1955. The sounds were recorded August 22, 2007. .......................................... 156 Figure 3.12 Three dimensional plot of the sum sound Power Spectral Density (PSD) of frequency levels 2-11 kHz. In 2007, the sounds of four ecosystems were recorded: deciduous forest, mid-succession field last tilled in 1955, early succession last tilled in 1989 (occasional burning) and a conventionally tilled corn/soybeanlwheat rotation field at Kellogg Biological Station, Michigan ....... 157 Figure 3.13 Distribution of sound power spectral density (PSD) in the frequency levels 1-6 kHz recorded in deciduous forests at Kellogg Biological Station, Hickory Corners, Michigan. The sounds were recorded in July and August of 2007. Sound power spectral density in the frequency levels 7-11 kHz was not different from 0, so they are not included in the graph. Errors represent 95 % confidence intervals from the mean ........................................................ 158 Figure 3.14 2007 sound power spectral density (PSD) of kHz frequencies 1-5 recorded in mid-successional field last tilled circa 1955 in Kellogg Biological Station, Hickory Corners, Michigan. The recordings were done between ~20:00 and 22:20 in July and August 2007. Sound power spectral density in the frequency levels 6-11 kHz was not different from 0, so they are not included in the graph. Errors represent 95 % confidence intervals from the mean ............ 159 Figure 3.15 2007 sound power spectral density (PSD) of frequency levels 1-11 kHz recorded in early successions field occasionally burned and last tilled in 1989 at the Kellogg Biological Station, Hickory Corners, Michigan. The xii recordings were done between ~20:00 and 22:00 in August 2007. Errors represent 95 % confidence intervals from the mean .................................. 160 Figure 3.16 Sonogram of Deciduous forest sounds in August 22, 2007, 10:15 pm. Color intensity means greater sound intensity (blue/green = low or no sound, red/maroon = very intense sound, or high PSD) ........................... 161 Figure 3.17 Sonogram of deciduous forest sounds in August 30, 2007 at 7:05 am. The insect sounds are the blurry line in kHz 4-5. The bird sounds, are seen as complex communication patterns and repetition of sounds. More sonograms can be seen in www.nemasoil.com ................................................................... 162 Figure 3.18 Sonograms of the sounds from an early succession with occasional burning last tilled in 1989. The recordings were done August 29, 2007 at 20:55. ...................................................................................................... 163 Figure 4.1 Sonograms of sounds of non-microwaved and microwaved compost with and without water as an activating agent. ........................................ 175 Figure 4.2 Power Spectral Densities (PSD, sum of kHz frequency levels 1-11) of microwaved and non-microwaved compost, without and with water (p< 0.0005), with 95% confidence interval bars for the means. ..................................... 176 Figure 4.3 Comparison of Power Spectral Densities (PSD, kHz levels 1-5) of microwaved (MC) and non-microwaved (C) compost with (+w) or without water (- w) added as an activating agent. The four treatments where: microwaved compost with no water added (MC-w), microwaved compost with water added (MC+w), compost with no water added (C-w), and compost with water added (C+w). Each treatment had five repetitions; the bars represent the mean for the five repetitions. The error bars represent 95% confidence intervals for the means. Each kHz frequency level represented is shown separate, i.e. kHz level 1 is named khz-L1 on the graph .................................................................. 177 Figure 4.4 Comparison of mean relative Power Spectral Density (PSD, watts/kHz) for four treatments in the kHz frequency levels 2-11. The four treatments were: microwaved compost with no water added (MC-w), microwaved compost with water added (MC+w), compost with no water added (C-w), and compost with water added (C+w). Each treatment had five repetitions. Each kHz level represented is shown separate, i.e. kHz level 2 is named kHz-2 on the graph. The error bars represent 95% confidence intervals (CI) for the means .............................................................................................. 178 xiii INTRODUCTION The objective of this dissertation was to obtain a greater understanding of the effect of agronomic disturbance on physical and biological aspects of ecosystems (Fig. L1). The work also compared the characteristics of native forest and old field successions, with agricultural no-till, no-input and conventionally tilled crop systems. The research was performed at the Michigan State University, W. K. Kellogg Biological Station, Long Term Ecological Research (KBS/LTER) in Hickory Comers, Michigan. Soil aggregates for acoustic research were collected at KBS/LTER and also obtained from Wooster, Ohio and Hoytville, Ohio. The research was divided into four mayor parts: 1) Impact of tillage on acoustical signatures during rapid hydration of air-dried soil aggregates, 2) Nematode community structure of soil from alternative management and natural ecosystems, 3) Temporal dynamics of acoustical signatures associated with alternative management and natural ecosystems, and 4) Impact of microwaves and water on acoustical signatures of a compost. Soil physical characteristics were measured through acoustical methods (Chapter 1). The sound produced by soil aggregates during the slaking process (breaking and bubbling when immersed in water) were recorded, analyzed and compared to traditional methods of water-aggregate stability measurements. The complete data set for these analyses can be found at www.nemasoil.com. Measuring of water-aggregate stability through acoustics had not been reported in the literature at the time of this dissertation. Water aggregate stability is an important soil characteristic that is related to soil quality. Soils with high 1 proportion of water-stable aggregates are less vulnerable to erosion, leaching, and soil organic matter loss. Soils with high organic carbon tend to have greater resistance to slaking (Zaher et al. 2005). Soils resistant to slaking also perform many ecosystem services more efficiently than soils with low water-aggregate stability. Management practices, such as tillage, affect water-aggregate stability (Park and Smucker 2005). The biological characteristics of the KBS/LTER ecosystems were also studied. The nematode community structures of soils from alternative managements and natural ecosystems at KBS/LTER were investigated. Soil ecosystem biodiversity, evenness, maturity, and structure are can be calculated using nematode communies (Bongers 1990, Bongers & Ferris 1999). A relationship between nematode community structure and soil quality has been reported in the literature (Neher 2001 and Bird & Birney 1998). Images and descriptions of the nematodes, Oligocheates and Tardigrades recovered from the various ecosystems at KBS/LTER can be found at www.nemasoil.com. Comparison of systems yields, soil bulk density, pH, soil carbon and nitrogen (%) can be found in appendices 26-31. Sounds can also be used to determine the biological health of ecosystems (Gage et al. 2001). Krause and Gage (2003) stated that “A landscape’s acoustics signature is a unique component of the evaluation of its function”. The objective of the research reported in Chapter 3 is to measure effects of ecosystem disturbance (agricultural and intensity of management) type using acoustical procedures through comparison with non-managed systems. 2 Acoustical methods do not require destructive sampling and can be done relatively easily and inexpensively, compared to other procedures. One of the reasons for this research is to enhance our understanding of ecosystem disturbance. The sounds of forest, old field successions, and no-till and no-input crops agricultural fields are reported and analyzed. The acoustical temporal dynamics of the various ecosystems were studied. It was hypothesized that the reason no significant sound intensity from biological activity at the soil surface in soils from any of the KBS/LTER ecosystems, was because of a lack of a specific activation event, or low population density of invertebrates on the soil near the recording hydrophone. Soil organisms tend to be in a dormant state and need to be activated in order to function to their full potential (Lavelle et al., 1995). In order to test this, water was added to soil/compost with and without living invertebrates, the resulting sounds were recorded. Increase of soil insect acoustics following an activation event have been reported by Mankin et al. 2006. The effects of water as a pulsing agent over the activity and acoustics of soil/compost invertebrates were reported in chapter 4. 6th 3:53:50 Barns. Lo cozmtowmfi 0:10.289: 32838 new cozmnEmQO .2 2:9“. m «3.59. S mean: 55me um 568;... «Enoch .83....utmm mcfiaob 3.3.3:? ucm 5.3803 ucm 32380:... Rm: .328 w>zmc Be: .520. 3an8 Lo 332.com of :0 Emma mafia m 3 .395 a. 3:. .88 9.5 gum: om?» mam Co 605 .v .3926 . .c 8 . L _ .muzmsoom 9.39m 9.302% >u_:=EEou o>on< .m .335 wuoumEoz .N Lmuamsu .8325... .mcozmum .mucmEtwnxm ozo .25 «Ewe. Ea: m=om .28:qu .8338.” 595:: 85¢.me mummmewmm :3 :0 main? 9 8:223. .25 3:33.“. mumemmmLBmB co mum...“ Co tutu A .335 .25 .983:ch ucm E593 “35-0: .=: .05 mEBm>m0um _~u_Eo:ocmm not Em: 53> Amp—.3333 c2332; , 2w: new :28 mean: EmanU 8 new $833.33 Lo 333m 333.03 Em .3323 a...“ co EEocome :o 260: 89.3536 Co tutu 2: Co msucfiflmnc: 858m < "8:033. £83m 19:30 REFERENCES Bird, George W. and M.F. Berney. 1998. Relationship Between Nematode Community Structure and Soil Quality. KBS/LTER Meetings. http:/llter.kbs. msu .ed u/Meetings/1 998_All_lnv_Meeting/bird.htm. Bongers, T. 1990. The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia 83:14-19. Bongers, T. and H. Ferris. 1999. Nematode community structure as a bio- indicator in environmental monitoring. Trends in Ecology and Evolution 14:224- 228. Gage, S. H., B. M. Napoletano, and M. C. Cooper. 2001. Assessment of ecosystem biodiversity by acoustic diversity indices. The Journal of the Acoustical Society of America 109: 2430. Krause, B. and S. Gage. 2003. Testing Biophony as an Indicator of Habitat Fitness and Dynamics. SEKI Natural Soundscape Vital Signs Pilot Program Report, February 3. Lavelle, P.C. Lattaud, D. Trigo, and I. Barois. 1995. Mutualism and biodiversity in soils. In book by: Collins, H.P., G. P. Robertson and M. J. Klug (eds.). 1995. The Significance and Regulation of Soil Biodiversity. Kluwer Academic Publishers, Dordrecht, the Netherlands. 23-33 Neher, DA. 2001. Role of nematodes in soil health and their use as indicators. Journal of Nematology 33: 161-168. Mankin, R. W. 2006. Increase in acoustic detectability of Plodia interpunctella larvae after low-energy microwave radar exposure. Florida Entomologist 89: 416-418. ”£145 kB] Park, E.J. and A. J. M. Smucker. 2005. Erosive strengths of concentric regions within soil macroaggregates. Soil Science Society of America Journal 69: 1912- 1921. Zaher, H., J. Caron, and B. Ouaki. 2005. Modeling aggregate internal pressure evolution following immersion to quantify mechanisms of structural stability. Soil Science Society of America Journal 69: 1-12. CHAPTER 1 IMPACT OF TILLAGE ON ACOUSTICAL SIGNATURES DURING RAPID HYDRATION OF AIR-DRIED SOIL AGGREGATES ABSTRACT The objective of this research was to determine if sound can be used to discriminate among soils and soil managements. Air-dried soil aggregates were immersed in water, CaSO4, or Sodium Hexametaphosphate solutions. Sounds from each aggregate hydration were digitally recorded using a hydrophone. Sounds were analyzed using Matlab software to produce sonograms and bar charts of frequency distributions. Soil aggregates were obtained from a native ecosystem at Kellogg Biological Station (Michigan); forest, tilled and non-tilled agricultural sites at the Wooster, Ohio Agricultural Experiment Station and tilled and non-tilled agricultural sites in Hoytville (Ohio). Sounds recorded from tilled soil aggregates had significantly greater sound Power Spectral Density (PSD) and variability than sounds from soils from non- managed ecosystems. We concluded that tilled soils contain a mixture of stable and less stable aggregates. Soil aggregates from tilled soils are generally less stable and contain less carbon than no-till and non-managed soils. Air released during wetting and slaking appears to cause greater sound in tilled soil than either the native soils or no- tilled soils. Either slow absorption of water or slow release of air resulted in lower PSD in aggregates from no-till and native, compared with the tilled soils. This is probably caused partly by organic matter that reduces the rate of entry of water into soil aggregates and reduces pressure buildup inside aggregates. This results in less breaking and bubbling, therefore less noise. Use of sound to record and quantify soil characteristics can be a useful way to evaluate resistance to slaking. Abbreviations: KBS/LTER, Kellogg Biological Station/Long Term Ecological Research, Michigan; NaHMP, Na-Hexametaphosphate; PSD, Power Spectral Density. Soils with the ability to resist degradation and respond to management in an optimal manner usually contain stable aggregates that are not degraded by the actions of water and extemal mechanical stresses (Dexter 1988). The process of aggregation takes place when particles of mineral matter are joined together by various organic and inorganic substances. The numerous biological, chemical, and physical components contributing to the formation of stable soil aggregates are impacted by ecosystem disturbances, including the agricultural practice of tillage (Amezketa 1999, Six et al. 1998, Pikul et a/ 2009). Recently, acoustical transmission analyses have been used to identify specific soil properties (Grift et al. 2005; Moore and Attenborough 1992). Soil Acoustics The physical characteristics of soil have been measured by active acoustics (sending sounds into a soil and receiving the signal) and passive acoustics (recording sound). The National Center for Physical Acoustics has a website section dedicated to active acoustical assessment of soil (httpzllwww.olemiss.edu/depglncoa/PorMat/SA.htm). Soil characteristics such as air-filled porosity and relative air permeability have been effectively measured through acoustic propagation (Moore and Attenborough 1992). Passive acoustics have been tested to measure soil compaction (Grift et al. 2005). Additional studies on the acoustics of soil physical characteristics, including acoustics of soil aggregate hydration, are limited. Soil Aggregation, Stability and Slaking Soil aggregation processes include both the formation and stabilization of aggregates. Flocculation of clay, wetting, drying, freezing, thawing, and the dynamics of both microbes and roots play important roles in aggregation. In addition, inorganic stabilizing agents like Ca2+, Al3", Fe3", oxides, and hydroxides of aluminum and iron, and carbonates of magnesium and calcium are involved in the process. Persistent, intermediate, and transient organic stabilizing agents may also have a role in the process. Soil organic matter can also be protected from decomposition inside an aggregate. When the aggregate breaks, the protected organic matter is subjected to microbial decomposition, releasing 002 (Jastrow and Miller 1998). Soil aggregation is crucial for preventing erosion, increasing water infiltration and maintaining soil surface integrity (F ranzluebbers et al. 2000). Stability of soil aggregates, in part, determines nutrient and pollutant leaching, mineralization of nutrients, and the extent and rate of conversion of soil carbon into C02. Soil aggregate stability is one of the physical characteristics of soil that can serve as an indicator of soil quality (Arshad and Coen 1992, Hortensius and Welling 1996). Additionally, soil properties such as erosive and crusting potential can be estimated when soil aggregate stability is measured (Amezketa 1999). Models of soil aggregation have been developed by Oades and Waters (1991), Elliot (1986), Tisdall and Oades (1982), and Edwards and Bremmer (1967); and reviewed by Amezketa (1999). Rapid hydration or flooding is a disruptive wetting method leading to aggregate slaking. Air slaking is caused by increasing internal pressures when dry soil aggregates are submerged in water causing the rapid escape of air bubbles and some breakage of the soil aggregate (Amezketa 1999; Dickson et al. 1991; Jastrow and Miller, 1991). Zaher etal. (2005) indicated that organic carbon reduced the rate of water entry inside the aggregate, and decreased the internal pressure of the aggregate, thereby, reducing slaking and rapid bubbling. Causarano (1993) reported that polar tensile strength does not always match soil aggregate stability. When evaluated by rapid water hydration, soil organic matter increases the strength of moist soil aggregates and may decrease the strength of dry soil aggregates. Factors that affect the strength of soil aggregates include the types and quantities of cations, organic matter, dispersible clays, drying and wetting cycles, the intensity of wetting and drying, and management practices (Park and Smucker 2005b). Soil aggregate stability modifications by alternative tillage operations have been quantified using wet/dry sieving, rainfall simulators and other conventional soil analysis methodologies (Amezketa 1999). Six et al. (2000), immersed soil aggregates in water (slaked treatment) as a pretreatment to soil stability assessment by wet sieving. Ecosystems Disturbance: Tillage Tillage is an agricultural practice that can increases aggregate slaking, increase 002 loss; reduce organic matter, and increase soil erosion and nutrient leaching (Six et al. 1998; Angers 1998). Reduced tillage practices can increase 9 soil aggregate stability, organic matter (Pikul et al. 2009), water infiltration and earthworm population densities. It can reduce soil erosion and preserve soil aggregate stability (Katsvairo et al. 2002). Tillage also impacts soil organic matter, nitrogen and carbon dynamics, and microbial community structures (Carter and Rennie 1982; Campbell et al. 1989). Robertson et al. (1993) found that cultivation reduced soil carbon by 50%, compared to a non-disturbed soil. Grandy and Robertson (2006) concluded that plowing once immediately and substantially alters aggregation and Light Fraction and particulate Carbon dynamics and that these conditions persist. The presence of vegetation increases soil aggregate stability, especially where there has been little disturbance. Additionally, plant cover can protect soil from erosion and nutrient leaching, serve as a source of nitrogen, provide organic matter, reduce disease potential, and enhance soil moisture holding capacity (Bowman et al. 1998). Ecosystem disturbance and management practices affect soil aggregate stability and pore arrangements. Soil aggregate stability and porosity also affect bio-geo-chemical processes (Park and Smucker 2005a). Soil aggregate polar tensile strength and rapid hydration are commonly used as measures of stability. Tensile strengths are quantified from the crushing forces on generally dry soil if the diameter of the soil aggregate is known. The methods of measuring tensile strengths are described by Dexter and Kroesbergen (1985). Erosive strengths methods were also used by Park and Smucker (2005b). Other macro soil aggregate stability measuring methods include wet sieving, dry sieving, and rainfall simulation. A review of these methods can be found in Amezketa (1999). 10 Objectives and Hypothesis The objectives of our research were: 1) to evaluate the suitability of acoustical recordings to quantify water-soil-aggregate-stability, associated with various soil tillage management systems and 2) compare our results to conventional methods of measuring soil aggregate stability and slaking. The method for achieving this objective was completed by recording the acoustical signatures of air-dried soil aggregates during rapid re-hydration (immersion). Our hypothesis is that sound caused by the rapid rehydration and sometimes breaking (air slaking, Hillel 2004) of air-dry aggregates can be used to identify the variation in soil aggregate stability in a gradient of soils from non-managed (forest) to highly managed (conventional agriculture). We hypothesize that each soil type and management combination will produce a unique sound or signature which will be statistically different from other soil types and management systems. Also, it was expected that the escape of air at different rates from soil pores would produce different sounds, and that the results of our recordings would be comparable with conventional methods of measuring resistance to slaking under the stress of rapid hydration. MATERIALS AND METHODS General Methods Soil aggregates were obtained from a native ecosystem at Michigan State University, Kellogg Biological Station/Long Term Ecological Research site (KBS/LTER, Hickory Corners, Michigan); native forest, tilled and non-tilled 11 agricultural sites at the Ohio Agricultural Experiment Station (Wooster, Ohio); and tilled and non-tilled agricultural sites in Hoytville, Ohio (Tables 1.1-2). Air-dried soil aggregates were rapidly rehydrated by immersing them in water, 5mM CaSO4 (stabilizing solution), or 509/L Na-Hexametaphosphate (dispersive solution). The acoustical signatures of each soil aggregate were recorded continuously for 30 seconds during the rapid hydration and slaking process. The sounds emanating from soil aggregates were recorded by placing an Aquarian hydrophone (A03, www.aquarianaudio.com, Anacortes Wyoming) in a container of water and adding aggregates to the water. The hydrophone was connected to an M-audio Mobile Preamp connected to a laptop computer (www.m-audio.com, lrwindale, California). Recordings were captured using Audio Audition (2004) as the soil aggregates were added to the water. The sounds were recorded at 16 bits, monaural at 22.050 kHz in .wav file format for 30 seconds. The sound files were named according to soil treatment (site/management) and replication number. The 30 second sound segments were processed using Matlab (MathWorks, www.mathworks.com). The Welch (1967) method was used to quantify the acoustical power (Power Spectral Density) in watts for each recording. The program produced several graphical representations of the sound profile from each 30 second sound sample, including a: 1) sonogram, 2) ocillogram, 3) trace of the Power Spectral Density (PSD) in watts/Hz, 4) bar chart of the PSD at one kHz intervals (watts/kHz) and 5) table of the PSD values in watts/kHz for each one kHz frequency interval from 0-1 1 kHz (Table 1. 3). The MatLab function “pwelch” implements Welch's method 12 of determining the power density in watts (\Nelch 1967) and is a way to estimate PSD using periodograms (finite segments of the original signal that are converted into a spectral representation using the Fourier transform). This computation was automated so that multiple sound samples could be processed. The PSD values for each 1.0 kHz increment were used to compare sounds produced by each of the soil aggregates tested. For statistical and interpretation purposes, sounds where compartmentalized into 1.0 kHz frequency intervals from 0-11 kHz. Low frequency sounds (kHz level 1 and sometimes level 2) were eliminated from the analysis, as these low frequencies contain background noise. For comparison of the total PSD among the treatments, graphs were made from the sum of all kHz levels, excluding kHz level 1, or levels 1 and 2. These represent the mean of the total PSD (sum of kHz levels 2-11 or 3-11). Two groups of experiments were conducted. Group-1 compared the acoustical signatures of soil aggregates from continuously tilled and native sites in water, a stabilizing solution and a dispersive solution. Group-2 compared the acoustical properties of soil aggregates from conventional and no-till management systems and native sites using only water. Preliminary experiments (Group 1) Three soils were used. These included: 1) Wooster silt loam (fine loamy, mixed, mesic, Typic Fragiudalf) from a native forest site in Wooster, Ohio; 2) conventionally tilled soil from Hoytville Ohio; silty clay loam (silty clay loam; fine, 13 illitic, mesic, Mollic Epiaqualfs) and 3) native, never-tilled soil from Hickory Corners, Michigan (KBS/LTER), sandy loam-silty clay loam (Kalamazoo Fine loamy, mixed, mesic, Typic Hapludalfs and Oshtemo coarse-loamy, mixed, mesic Typic Hapludalf). The soils were collected and processed for air-dried soil aggregates as described by Park and Smucker (2005b). The aggregates used in this research were part of the collection used by Park and Smucker (2005a & b). During the air-drying process, the large soil aggregates were broken manually along their natural planes of weakness using gentle manual forces, resulting in aggregates of s 20 mm. The air-dried aggregates were manually dry sieved for less than one minute to obtain a distribution of <10, 1.0-2.0, 2.0-4.0, 4.0-6.3, 6.3- 9.5, and > 9.5 mm in diameter aggregates and stored in separate plastic containers at room temperature. Aggregates used in this research were 4.0-6.3 and 6.3-9.5 mm in diameter (Park and Smucker 2005b). Details about the soils and management systems are presented in Tables 1.1-2. Individual soil aggregates, 4.0 to 9.5 mm in diameter, from each of the three soils were submerged in separate glass beakers containing 250 mL of purified water (total dissolved solids, 4 ppm), 5mM CaSO4, or 50 g/L NaHMP. Each individual soil aggregate was placed on the surface of the water. It then fell a distance of about 5 cm. The resulting acoustical signatures were continuously recorded for 30 seconds with the hydrophone located directly above the immersed aggregate. The process was repeated four times for each soil/management and solution treatment, resulting in 36 individual recordings. To determine the level of background sound, a recording was done in the 14 absence of soil aggregates. Analysis of the sound was done with Matlab using the P-welch method (Table 1.3) and bar graphs of the means were produced with Minitab using standard error bars. Minitab statistical software was used for statistical analyses of the data. Impact of Tillage on Aggregate Acoustics (Group 2) Air-dried soil aggregates from conventionally tilled, non tilled and native soils were analyzed in the second group of experiments (Table 1.1-2). Aggregates from each treatment were placed on a 1.0 mm mesh screen held by a wire and submerged to a depth of 10 cm in seven liters of water in a 25 cm- wide and 20 cm-deep glass desiccator. The hydrophone was placed to the side of the sample in a horizontal position. Sounds generated by each immersed soil aggregate were recorded for 30 seconds. Measurement of the acoustics of each of three soil types and three management systems were replicated 30 times. The recordings were done in a sound-proof chamber at the Audiology Laboratory at Michigan State University. Sounds were analyzed using the same Matlab code that was used for the first group of experiments (Table 1.3). Minitab 15 software was used for statistical analysis including ANOVAs, T-tests, and 95% confidence intervals. Sounds were also graphically portrayed with sonograms. The analysis of acoustic observations was compared with conventional methods of aggregate stability and resistance to slaking measurements. Also, the same group of 15 aggregates from the erosive strength measurements reported by Park and Smucker (2005a, 2005b) were used. Supplementary Experiments Two additional tests were done to address questions related to Group 1 and Group 2 experiments. The same soil aggregates that were used for the Group 2 acoustical experiments were evaluated visually for slaking using a scale of 1-6 (1= soil stayed intact, no slaking for the 30 seconds of the recording and 6= soil aggregate disintegrated immediately after immersion). The data were compared to our acoustical results. In the other supplementary test, Tygon (Akron, Ohio) tubing rubber tubes (bubblers) of different diameters (small= 0.3 mm & large: 1 cm) were inserted into water. The sounds produced by the air bubbles were recorded with a hydrophone. This was done to quantify the sounds of different size bubbles and compare it with the soil aggregate slaking acoustic recordings. All of the sonograms and sound recordings for each replication of each treatment and additional statistics, graphs, and video recordings (movies) can be found at www.nemasoil.com. RESULTS Preliminary Experiments (Group 1) Hydration of aggregates from each of the three soils produced different acoustical signatures. Tilled Hoytville soils aggregates generated extensive 16 acoustical intensity (PSD) during the first 10 seconds of the recording sessions and lower intensity and less frequency during the last 20 seconds of the recording sessions (Figure 1.1a). Soils from the native sites at Wooster and Kellogg Biological Station exhibited less sound intensity (Figures 1.1b-c). The sounds produced by the tilled Hoytville soil aggregates were detected at all 11 kHz levels measured. The two native soils were consistently quieter that the tilled soils. The sonograms were distinct for each soil management system. The sonogram of the background sound had only a faint signal in kHz level 1 (Figure 1.1d). Soil aggregates from tilled soil from Hoytville (conventional tillage) displayed significantly (p = 0.017) greater PSD values than Wooster and KBS native soils in water, 5mM CaSO4, and 50 g/L NaHMP solutions (Figure 1.2; one- way ANOVA). Soil aggregates from the Kellogg Biological Station and Wooster native areas generated lower PSD values than aggregates from the conventionally tilled Hoytville treatment. Soil management system (treatment) had a greater impact than wetting solution (H20, CaSO4, or Na-HMP) on the acoustical signatures of rapidly hydrated air-dry aggregates. Soil wetting solution did not significantly affect the results (Figure 1.2). Sounds from hydrating aggregates from the native soils from Wooster and KBS exhibited low PSD values and low variability. The PSD and variability of acoustical power associated with Hoytville-tilled soil aggregates was greater than that associated with the Wooster and KBS native soil aggregates (Figure 1.2). Immersion of aggregates in H20, 50 g/L Na-HMP or 5 mM CaSO4 solutions did 17 not significantly alter the acoustical power generated by soil types or management. Impact of Tillage on Aggregate Acoustics (Group 2) Sounds from soil aggregate hydration from native soils had lower PSD than the sounds from no-till and conventional till soil/management systems (Figure 1.3). Soil aggregates from KBS native soil remained stable when immersed in water for the duration of the measurement. Soil aggregates from conventionally tilled sites in both Hoytville and Wooster soils began slaking immediately following immersion. PSD values for the sum of kHz levels 2-11 from hydrated Hoytville aggregates from continuous tillage site were 57% greater than aggregates from Hoytville no-till (p< 0.001, T-test). The mean acoustical power for continuously tilled Hoytville aggregates was 0.381 (standard error SE=0.036 for the sum of kHz levels 2-11), while Hoytville aggregates managed without tillage produced lower mean acoustical intensities of 0.2180 (SE = 0.0035, Figure 1.3). Acoustical power values (sum of kHz 2-11, Figure 1.3) of aggregates from conventionally tilled Wooster silt loam soils were 200% greater (mean= 1.2, SE = 0.33; p= 0.092, two sample T-test) than acoustical power from the aggregates from the Wooster no-till site (mean= 0.592, SE = 0.12) and 550% greater than aggregates from the Wooster native soil (mean= 0.2236, SE=0.0052; p= 0.006, two sample T-test). The lowest acoustical power and lowest variability occurred for the Wooster silt loam soils from the native forest (Figure 1.3). 18 Tilled soil from Wooster, Ohio had the greatest PSD and highest variability of all soil types and treatments tested. Native soils had the lowest PSD and variability (Figure 1.3, p= 0.05, 95% confidence intervals for the mean (95% CI)). No-Till had intermediate values between the tilled ecosystems and the native ecosystems. Hoytville-Till had a lower sound intensity (PSD) value than the Wooster-Till (p= 0.05). A fully nested ANOVA indicates that there is significant evidence (p = 0.04) that soil management (till and no-till) had an effect on the PSD of hydrated soil aggregates. There was no significant evidence for site (Wooster vs. Hoytville) effect (p = 0.204) on the PSD of soil aggregate hydration. The acoustic frequencies that dominated in the sounds of the soil aggregate hydration from Hoytville and Wooster till, and Wooster no-till soils, were 1-4 kHz frequencies (Figure 1.4, kHz level 1 is not shown in the graph). The higher frequencies (5-11 kHz) did not vary significantly between or within treatment. In the native soils, sound was more equally distributed between the different kHz levels (Figure 1.4). Supplementary Experiments When soil aggregates were immersed in water, they had different Visual Slaking lndices (breaking). The tilled soils had the highest visual slaking values of all the soil/management systems (p = 0.05 (95% Cl), Figure 1.5). The native soils had the lowest slaking values and the no-till treatments were intermediate, as expected. This agreed with the acoustical data, giving us an indication that 19 the sounds recorded were in part created during the slaking and subsequent bubbling process. When air bubbles of different sizes were recorded using the same methods as used for the soil aggregate hydration, most of the sounds produced were in the kHz 1-3 levels (Figure 1.6). Larger bubbles produced louder sounds than the smaller bubbles (Linear regression R2= 95.8%, p=0.004, Figure 1.7) DISCUSSION Comparison of Conventional and Acoustical Methods for Soil Water- Aggregate Stability Analysis Mahboubi and Lal (1998) measured the soil aggregate stability on air dried aggregates for no-till and tilled treatments at Wooster and South Charleston Ohio using the wet sieving technique (Yoder, 1936). Although the results were expressed in different ways, mean weight diameter and percent total aggregation are selected for comparison with acoustical methodology. Total percent aggregation is the percent of the total soil dry weight of a sample made up of water stable aggregates greater than 0.1 mm. The mean weight diameter of the no-till treatments was higher than both of the tillage systems measured (no-till 1.19 a, chisel plow 0.71 b, and moldboard plow 0.53 c). The total percent aggregation was higher in the no-till treatment compared to the two till treatments tested (no-till 41.4a, chisel plow 29.6 b, and moldboard plow 25.8 b). This compares well with our results, in which tilled soils had greater PSD (sound intensity) than no-till soils and native soils (Figures 1.2 & 1.3). Our evidence 20 suggest that the louder the sounds, the lower the water-stability of soil aggregates and resistance to slaking. The sounds are probably caused by the effects of slaking, including air bubbling (Zaher et al. 2005). Six et al. (2000) did aggregate separations, soil stability assessments and carbon and nitrogen measurements of soils from Wooster Ohio, KBS/LTER Michigan, and two others that we did not test (Sidney, NE and Lexington, KY). They also immersed air-dried soil in water (slaked treatment); the “slaked aggregate-size distribution differed between management treatments at all sites”. Native soil had the greatest proportion of macro-aggregates, whereas, conventional tillage had the lowest and no-till was intermediate. In Wooster, they did not observe a significant difference between the native and the no-till soil. They indicated that the cause was the similar values of total carbon and particulate organic matter (Six et al. 1999). This is also consistent with our aggregate slaking and sound recordings. Conventionally tilled soil had the highest PSD values, whereas, the no-till were intermediate and native soils had the lowest PSD. It Is consistent with the literature and our own observations to hypothesize that the sound came from the slaking process. We visually categorized levels of slaking in aggregates when they were immersed. The results indicated that the conventional tillage had significantly (p= 0.05) more slaking when immersed in water than both the native and no-till soils. The native soil had the lowest slaking with the no-till having an intermediate value (Figure 1.5). There was no significant difference in the level of slaking between Wooster 21 no-till and Wooster native regimes. This is consistent with the results obtained by Six et al. (2000). The high variability among soil aggregate stabilities from tilled soils, reported by Park and Smucker (2005a and 2005b), were also reflected by the large variability of acoustical signatures of tilled soils from different soil types. In contrast, the more stable soil aggregates from native forest soils generated lower variability and lower acoustical power values. These acoustical indices support current knowledge that soil tillage diminishes aggregate stability as reported by Amezketa (1999), Six et al. (1998), and Angers (1998). Furthermore, the greater above- and below-ground accumulations of plant and microbial biomass, associated with native succession and forest ecosystems decreased PSD, and increased aggregate stability (Amezketa 1999). The analysis of acoustical power from different soils/management regimes separated the stabilities of aggregates from the same soil types and management systems reported by Park and Smucker (2005b). Their method that identifies erosive strengths of concentric layers from aggregates compared well with wet sieving and crushing strength measurements of aggregates. Acoustical signatures, erosive strengths, and wet sieving have all demonstrated comparative differences among aggregate resistances to mechanical and water forces and established that soil aggregate strengths were highest among soils from native ecosystems, moderate in the no-till ecosystems and weakest in conventional tillage (Yoo and Wander, 2008). 22 Role of Soil Organic Carbon on the Slaking Process Carbon increases water-stability of soil aggregates. In tests done by Bipfubusa et al. (2008), carbon increased the mean weight diameter of water- stable aggregates by 45% (p=0.05) compared to the soil without carbon amendments. In addition, the carbon amendments increased the aggregates resistance to slaking. The effect is lasting, as these results were obtained two years after adding the organic carbon. The higher organic carbon contents in the native and no-till soil most likely affected our results. The soil aggregates with lower carbon content slaked most when immersed in water, and therefore produced the most noise. Most of the acoustics from the rapid hydration of soil aggregates from tilled soils were produced during the first 10 seconds of recording (Figure 1.1a). This is consistent with the findings of Zaher et al. 2005, that “aggregates rupture rapidly in contact with water, within the first 8 seconds of immersion”. Aggregates, especially from tilled sites, ruptured within the first 10 seconds of immersion, matching with the acoustics produced. It appears that soil aggregate rapid hydration acoustics are recording the effects of soil aggregate disruption, especially air bubble release. Zaher et al. (2005) measured the rate of air escape from immersed soil aggregates during 8 seconds in time and compared different soil types and organic matter contents. They showed that soils with high organic matter lose air more slowly than soils with low organic matter content. They came to the conclusion that the two factors controlling aggregate disintegration, namely pressure buildup and swelling are significantly reduced by 23 the addition of organic matter... and indicate that organic matter plays a role in soil stability by improving cohesion and contributing to a decrease in water entry so, the organic matter leads to a decrease in swelling and intra-aggregate pressure. The two mechanisms of action of the organic matter in reducing the rate of water entry are occlusion and the increase in the rugosity and hydrophobicity of the pore space by the carbonaceous fractions. A good image of the conceptual model of the factors controlling aggregate stability when rapidly hydrated can be found at httpzllsoil.sciiournals.org/cgi/content/full/69/1/1/FIG6 _Z_aher et al. 2005. This hypothesis stated by Zaher et al. (2005) fits our results. In general the higher the carbon content of the soil, the lower the PSD (sound intensity) recorded (Table 1.1 and Figure 1.3). Sullivan (1990) indicated that “hydrophobic properties of soil organic matter can increase the amount of air encapsulation within soil materials during water uptake; and secondly, that this increased air encapsulation can reduce water uptake rates sufficiently to prevent slaking.” It is known that native and no-till soils tend to have more soil organic matter than conventionally tilled soils. The organic matter increases air encapsulation and reduces rate of water uptake, therefore reducing slaking when soil is rapidly wetted (Sullivan 1990). We believe that this is in part responsible for the lower PSD’s in the native and no-till soils compared to the conventionally tilled soils. Six and Paustian (1999), reported that carbon content in Wooster (Ohio), KBS (Michigan) and Sydney (Nebraska) were greatest in the native forest, lowest in the conventional tillage and intermediate in the no-till. “Greater soil carbon 24 contents increased water stability of soil aggregates” in the wet-sieving aggregate stability measured by Park et al. (2005) in Wooster and Hoytville soils from native, no-till and conventionally tilled sites. They also noted that soil carbon contents in no-till soils were 1.6 and 2.2 fold greater than in conventional tillage in Hoytville and Wooster. Soil Aggregate Hydration Acoustics Acoustical methods appear to be appropriate for estimating degree of slaking during rapid hydration. They are also useful in distinguishing between soil types and soil management systems. Comparing the acoustical signatures of soil aggregates from the same location, it is clear that soil tillage increases variability among aggregate samples. The greater variability in acoustical signatures from tilled soils can be explained by the different histories of each soil aggregate. Not all aggregates are affected by the same disturbance. Some might be protected in some way, such as being in the middle of a much larger soil clod. Other aggregates might be significantly reduced in size and stability by tillage tools. In both experiments, the most stable soil aggregates were from the KBS Long Term Ecological Research, native succession and the Wooster native forest. These soils generated extremely low PSD’s and the tilled soils generated higher PSD’s. Also native soils had low variability compared to the more disturbed agro-ecosystems (Figures 1.2 & 1.3). Generally, the lower frequencies of 2, 3 and 4 kHz were the predominant frequencies produced from 25 the hydration of the aggregates with more agricultural disturbance in their histories (Figure 1.4). In comparison, sounds from the native soils were more equally distributed among the different frequencies (Figure 1.4), while sound distribution (in kHz 2-11) and variability among aggregates from no-till Wooster soils were between the tilled and native successional soils (Figures 1.3 & 1.4). Comparing the low variability from native soils with the extremely high variable data for aggregates sampled from the conventionally tilled soil demonstrates how our efforts to homogenize soil aggregate fractions by conventional tillage actually causes greater heterogeneity among the tilled aggregates. Differences between Hoytville and Wooster: Differences among the acoustical signatures of tilled Hoytville soils compared to tilled Wooster soils (Figures 1.3 & 1.4) appears to indicate that different soil types are more variable in relation to the effects of tillage on the resistance to slaking of soil aggregates. Acoustical analysis of both the tilled and non-tilled Wooster silt soils showed that there was a three-fold greater amount of PSD than that computed for the Hoytville silty clay soils. Like the acoustics results, Park and Smucker (2005b) erosive strengths test showed a greater stability in the Hoytville soils, compared to the Wooster soils. The difference in the erosive strength of the concentric layers within dry soil aggregates of the two soils were nearly 200-fold (Park and Smucker 2005b). Some of the differences between the lower wet acoustical signatures and the higher dry erosive strengths values for aggregate layers of Wooster and Hoytville soils can be explained by the lower intra-aggregate porosities and higher bulk densities of Hoytville aggregates (Park and Smucker 26 2005a). Causarano (1993) reported that carbon contents increased the strength of moist soil aggregates. Consequently, the rapid hydration of high carbon aggregates would increase the stability and decrease the acoustic signature. The Hoytville soils may be naturally more stable than Wooster soils, most likely because of the greater clay and soil organic matter contents. The results in our research using rapid soil aggregate hydration and acoustical recording lead us to conclude soils with higher carbon content are more stable when less disturbed by tillage. Jarecki and Lal (2005) compared the water-aggregate stability of Hoytville, and South Charleston Ohio till no-till soil. They concluded that “the plow till treatments had a small impact on soil aggregation in clayey soil (Hoytville). The decline in water-stable aggregates with reference to no-till was no more than one sixth. In the silt loam soil, however, the water-stable aggregates in plow till treatments were merely one third of that in the no-till treatments”, but both soil types had more water-stable aggregates in the no-till treatments compared to the tilled treatments. This is the same conclusion that we reached through our acoustical analysis. Our results indicate that agriculture disturbance did not have as strong an impact on Hoytville clayey soil, compared to the silt loam from Wooster Ohio. This conclusion was also reached by Jarecki et al. 2005. It, in part, explains our results for the second set of experiments. The Hoytville till soil generated significantly more sound than the Hoytville no-till, but the difference was not as great as associated with the till and no-till aggregates from Wooster (Figure 1.3). The difference is, in part, likely caused by the soil type and the 27 organic matter content. Jarecki et at. (2005) said that the historic loss of soil organic carbon was 25 to 35% in Hoytville (clayey soil) and 19 to 25% in S. Charleston (silt loam). Hoytville had more water-stable aggregates in the no-till, compared to the tilled treatments and more than the silt loam from S. Charleston. Differences between Group 1 and 2 Experiments: We began the first group of experiments with the objective to test if there was any difference in the resistance to slaking between the tilled and the native soils and if our acoustical methods could be used to document these differences. We also wanted to determine if dispersive (Na-HMP) or stabilizing (CaSO4) solutions would have an effect on the sounds, during the slaking process, for these soils. When the results became clear, we increased the number of soils and the replications in the second group of experiments. Since the wetting solutions did not have a significant effect on the sounds, we did not include them in the second group of experiments. The high variability and the low number of replications (four) probably obscured the effects of the wetting agents. The PSD observed in the first set of experiments were much higher than those recorded in the second set of experiments (Figures 1.2 and 1.3). This was most likely because in the first set of experiments the hydrophone was placed directly above the slaking aggregate, so the air bubbles were hitting the hydrophone directly. In the second set of experiments, the hydrophone was placed besides the aggregate. The air bubbles did not hit the hydrophone directly. 28 Supplementary Experiments: Use of a Visual Slaking Index (1-6) produced similar results as the acoustical analysis. The observations indicated that the tilled soils had the highest slaking when immersed in water and the native soils had the lowest slaking, with the no-till having intermediate values (Figure 1.5); in the visual slaking supplementary experiment, however, we did not see the differences between Hoytville and Wooster as documented in the group 2 acoustical experiments. Wooster-Till had significantly more PSD than Hoytville Till (Figure 1.3). This difference was not seen in our visual assessment (Figure 1.5), suggesting that our visual assessment was an adequate procedure. Maybe soil aggregates appeared to totally disintegrate, but in reality, smaller aggregates were formed or the higher carbon content of Hoytville had an effect of reducing the noise, but not the visual breaking. Since our Wooster and Hoytville acoustical results were more consistent with the literate than our visual assessment, we believe than our visual assessment was not accurate. The sounds produced by the soil aggregate rapid hydration were likely produced by air bubbles and the aggregate breaking during the slaking process. In our recordings of air bubbles in water, the lower three kHz levels were dominant. This is similar to what we observed in the soil aggregate hydration experiments (Figure 1.6 & 1.4). The larger the air bubble size, the higher the sound (R2= 95.8%, p=0.004, Figure 1.7) 29 CONCLUSION Our results concurred with the conclusions reached by the majority of the scientific literature, indicating that tillage increases vulnerability to slaking. Our conclusion that native soils are more water stable than no-till soils and that no-till is more resistant to slaking than soil with a conventional tillage management, is also in agreement with the literature. We concluded that: 1) the results of the acoustical research indicate that soil aggregates from no-till sites have higher resistance to slaking and generate less sound (PSD) than those from conventional tillage systems. 2) Native soils (non-disturbed soil) had the least slaking and less PSD when hydrated rapidly. 3) Acoustical methods appear to have potential for estimating water soil aggregate stability and degree of slaking. 4) Furthermore, the impacts of tillage on aggregate slaking can be potentially quantified using acoustical technology. 5) Our acoustic methods are faster and simpler than most of the conventional methods of determining soil aggregate stability, but more research needs to be done in order to determine the quantifiable correlation between the acoustical methodologies and the conventional methods. 6) Tillage reduces water-soil aggregate stability of soil; this in part is caused by the decrease in organic carbon in tilled soils (Six et al. 2000 and Zaher et al. 2005). Acoustical methods provide comparable results to the conventional methods of water-aggregate stability. Acoustical methods are rapid providing quantifiable results. Currently, more work needs to be done to determine what exactly are the sounds recording, most likely it is the bubbling and breaking during the slaking process. More 30 quantification of the relationship between the sound produced and porosity, aggregate stability, carbon contents et al. is needed. The effects of hydr0phobicity caused by soil carbon on the soil aggregate rapid hydration sounds produced also need to be determined and quantified. 31 TABLES Table 1.1. Soil collection locations, management, carbon (%) and bulk density of the six soil air-dried aggregates sets used in this research (adapted from Park and Smucker, 2005a, 2005b; Six et al. 2000). Soil aggregate characteristics Bulk Carbon content Location and management density system (9 cm ) (%) Hoytville, 0H (Silty clay loam) 1. Conventional Till I“ 1.76 2.09 2. No-Till * 1.64 3.31 Wooster, OH (Silt loam) 3. Conventionally Till * 1.78 0.77 4. No-Till * 1.56 1.96 5. Native Forest 1 1.40 2.84 Kellogg Biological Station (KBS), Ml (Loam) 6. Native Succession * 1.62 1.70 T Used in the first and second group of experiments * Used in the second group of experiments only 32 Table 1.2. Soil collection locations, site establishment dates, management descriptions, and taxonomy of the of the six soils aggregate sets used in this research (adapted from Park and Smucker 2005a, 2005b; Mahboubi and Lal 1998, Dick et al. 1997, Robertson et al. 1993 and Six et al. 2000 &1999). Location Management description Soil taxonomy Hoytville, Ohio Established 1963 41°03’ N, 84°04’ W Conv. TillT Continuous corn; fall moldboard plow, 20-25cm deep and one or two 10cm deep secondary tillage treatments. No-TiIF Continuous corn; No-Till planting (cutting through crop residues), no additional tillage. Silty clay loam; fine, illitic, mesic, Mollic Epiaqualfs Wooster, Ohio Established 1962 40°48’ N, 82° 00’ W Conv. Tiltf Continuous corn; spring moldboard plow, 20-25cm deep and one or two 10cm deep secondary tillage treatments No-Till* Continuous corn: No tillage was used. Native Forest’r Nearby Forest Soil Fine loamy, mixed, mesic, Typic F ragiudalf KBS/LTER, Hickory Corners Michigan Established1986 42°24’ N, 85° 24’ W Native Soil T without recent history of tillage Kalamazoo fine loamy, mixed, mesic, Typic Hapludalfs and Oshtemo coarse- Ioamy, mixed mesic Typic Hapludalf 7 Used in the first and second group of experiments * Used in the second group of experiments only 33 Table 1.3. Matlab code for computation of the average Power Spectral Density (acoustical intensity) for 1 kHz frequency bins (plus total) from a .wav file segment. The last calculation (Tab(i,12)) is the sum for all 11 kHz levels. 96**iit*************i****iii*************************iiii************i************ % Calculate the average Power Spectral Density (PSD) of the frequency bands using Welch method. 96************************************************t*****tifi*********************** [y,Fs] = wavread(FileSet); % Set wavefile to variable for plot [signal,Fs] = wavread(FileSet); % Access the wav file segment Pxx = pwelch(signal,[],[],512.22050); % Calculate pwelch Hpsd = dspdata.psd(Pxx,'Fs’,22050,'spectrumType','onesided'); 96************i*i*************i*****************t*ii**************************i***** % Create the matrix of average power based on parameters set for PSD for each 1 kHz frequency band (plus total) in a .wav file segment. Multiply % values by a constant (1,000,000) to scale values. 96*******i**i**************************i*************************i**i*****i********* Tab(i,1) = avgpower(Hpsd,[OOOO 1000])*1000000; % average PSD 0000-1000 Hz Tab(i,2) = avgpower(Hpsd,[1000 2000])*1000000; % average PSD 1000-2000 Hz Tab(i,3) = avgpower(Hpsd,[2000 3000])*1000000; % average PSD 2000-3000 Hz Tab(i,4) = avgpower(Hpsd,[3000 4000])*1000000; % average PSD 3000-4000 Hz Tab(i,5) = avgpower(Hpsd,[4000 5000])‘1000000; % average PSD 4000-5000 Hz Tab(i,6) = avgpower(Hpsd,[5000 6000])*1000000; % average PSD 5000-6000 Hz Tab(i,7) = avgpower(Hpsd,[6000 7000])*1000000; % average PSD 6000-7000 Hz Tab(i,8) = avgpower(Hpsd,[7000 8000])“1000000; % average PSD 7000-8000 Hz Tab(i,9) = avgpower(Hpsd,[8000 9000])*1000000; % average PSD 8000-9000 Hz Tab(i,10) = avgpower(Hpsd,[9000 10000])*1000000; % average PSD 9000-10000 Hz Tab(i,11) = avgpower(Hpsd,[10000 11000])*1000000; % average PSD 10000-11000 Hz Tab(i,12) = avgpower(Hpsd)* 1000000; % average PSD 0-11000 Hz 34 FIGURES a. Hoytville-Till b. Wooster-Native kHz 1-11 C. KBS-Native CI. Background kHz 1-11 Time 0-30 seconds Time 0-30 seconds Figure 1.1 a-d: Spectrograms of rapid water hydration of soil aggregates from three different soils: a) Hoytville, Ohio continuous till, b) Wooster, Ohio native forest, c) KBS, Hickory Corners, Michigan native soil and d) background sound with no soil aggregates. The color intensity and brightness indicates sound intensity. Black indicates no sound. Lighter color means higher sound intensity. 35 505 30- 20- 10- Power Spectral Density (watts/ kHz) , ..1 .: h‘ CaSO4 H20 NaHmP CaSO4 HZO NaHmP CaSO4 l-l20 NaHmP Hoytville-Till KBS-Native Wooster-Native Figure 1.2 Relationship among Power Spectral Density (acoustical intensity, sum of kHz frequency levels 3-11) of soil aggregates from three soil/management systems: a native succession at the Kellogg‘Biological Station (KBS), Hickory Corners; Michigan, a conventionally-tilled soil from Hoytville, Ohio; and a native forest soil from Wooster, Ohio. Samples were immersed in water (H20), 50 g/L Na-Hexametaphosphate (NaHmP), or 5mM CaSO4. Error bars indicate standard error of the mean of four replicate aggregates. 36 Power Spectral Density (watts/ kHz) Mill—Till KBS Hoytville Wooster Figure 1.3 Relationship between Power Spectral Density Mean (acoustical intensity, sum of kHz 2-11 frequency levels) of rapidly hydrated (immersed in water) soil aggregates and six soil/management systems: native succession at KBS (Hickory Corners, Michigan); conventionally tilled and no tilled soil from Hoytville (Ohio); and native forest, no-till and conventionally tilled soil from Wooster (Ohio). Error bars indicate standard error intervals from the mean of 30 replicates. Letters represent significant difference using 95 % confidence intervals for the mean. 37 Frequency E .kl-lthl x .kl-lthO \ g DkHzIs g .kHzLB E [JkHzIJ 'a .kI-lzL6 Elm-125 _ II.. > 'o’ ’0 .1: ;., In 3. r: .- . :0 .; , 200- .. - 30.0 “ :44 h m 33 , 5 °.;.. :4- .. . In ‘- .;.;.;.;.;.;.;. 5;. 1 . . 0.0.0.0 ,. vvv‘vv v 0.1 b.0'07v.0. '0’; 0.4 3;. Figure 1.6 Relationship between air bubbler tube size (1= small 0.3mm, 5= large 1cm) and Power Spectral Densities (sound intensity) from kHz 1-3 levels sound frequency produced by air bubbles in water. KHz 4-11 had low values and could not be seen in the graph. 40 A N I X E 400 - S 300 - Jr :1"! 8 v 200 - E 2 5 35.6368 3 100 _ R-Sq 95.3% a R-Sq(adj) 94.4% E o p value: 0.004 e 0 _ I r I j I7 g 1 2 3 4 5 a. Air Babbler Tubes Sizes Figure 1.7 Relationship between air bubbler tube size (1= small 0.3mm, 5= large 1cm) and Power Spectral Density (sound intensity). Air bubbles of differing sizes were released in water and the sounds recorded. Equation is Sum kHzL1- 11(PSD) = - 58.45 + 93.15 bubble size. R2= 95.8%, p=0.004. 41 REFERENCES Adobe Systems Incorporated. 2004. Adobe Audition 1.4 User Guide for WIndows 299 pp. Amezketa, E. 1999. Soil Aggregate Stability: A Review. Journal of Sustainable Agriculture 14: 83-151. Angers, D. 1998. 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Soil Science Society of America Journal 72:670-676 Yoder, RE. 1936. A direct method of aggregate analysis and a study of a physical nature of erosion losses. Journal of the American Society of Agronomy 28: 337-351. Zaher, H., J. Caron, and B. Ouaki. 2005. Modeling aggregate internal pressure evolution following immersion to quantify mechanisms of structural stability. Soil Science Society of America Journal 69: 1-12. 45 CHAPTER 2 NEMATODE COMMUNITY STRUCTURE OF SOIL FROM ALTERNATIVE MANAGEMENT AND NATURAL ECOSYSTEMS ABSTRACT Soil is a largely unexplored natural resource and nematodes can be used to provide a view into its processes and conditions. Nematodes and nematode community structure analysis have been shown to be useful indicators in ecological studies of the impact of management on soil quality. In this research we compared deciduous forest, successional old field successions, no-till, bio- based (organic), and conventionally tillage ecosystems using nematode community structure methodology. The study was conducted at the Long-Term Ecological Research (LTER) site at the Kellogg Biological Station (KBS), which is uniquely designed to evaluate alternative ecosystems. The objectives of this research were to: 1) compare soil nematode community structures among three agricultural managements systems, a natural forest and two successional old fields (grasses and forbs); 2) determine if the community indices which measure ecosystem biodiversity, stability and maturity can be used to distinguish among these ecosystems in relation to the level of soil disturbance. We found that nematode communities in the forest and old field successions were the most biodiverse, mature and stable. The nematode communities were different from those associated with the agriculture soils. The conventional till or the no-till agricultural managements tended to have lowest biodiversity, maturity and evenness. Ecosystem specific taxa were observed. Differences were greatest 46 when the soil was dry, probably because increased soil moisture makes resources more available such that the opportunistic nematodes (r-strategist or lower c-p values) become more abundant. In conclusion, management affected nematode communities. Abbreviations: KBS/LTER = Kellogg Biological Station/Long Term Ecological Research, 95 % CI = 95% Confidence Interval of the mean. 47 Nematodes (Nematoda) are believed to be the Earth’s most abundant metazoan and are commonly found in soils throughout the world’s ecosystems(Bongers 1990). The majority of biological diversity in terrestrial ecosystems occurs in soil. Soil is said to be one of the earth’s final frontiers (Andre et al. 2001). Nematode communities in soil are very diverse and composed of many species of herbivores, bacterivores, fungivores, omnivores, and carnivores. Some nematodes fulfill a role in cycling nutrients through mineralization, making nutrients available for use by autotrophs in primary production. Because nematode taxa have different life spans, survival strategies and reproductive capacities, they are used to measure ecosystem change and disturbance (Gomes et al. 2003, Freckman 1982, Samoiloff 1987, and Bongers 1990). Since 1985, substantial effort has been devoted to documenting and understanding nematode community structure changes associated with different plant communities, management practices and ecosystem disturbance levels (Neher et al. 2005, Gomes et al. 2003, Niblack 1989, Hyvonen & Persson 1990, Coleman et al. 1991, Wasilewska 1991, Freckman & Ettema 1993, Neher & Campbell 1994 and lngham 1985). Typically, a soil sample of 100 g has approximately 3,000 nematodes of numerous species with different food web functions (Bongers and Bongers 1998). The combination of taxons provides an opportunity to use nematode community structure as a bio-indicator of soil disturbance and quality (Ferris & Matute 2003, Ferris et al. 1996 and Bongers & Bongers 1998) and thus to make in-situ assessments of ecosystem disturbance. 48 Nematodes also have been used to assess vulnerability of soil ecosystems in faunal and environmental studies (Bonger and Ferris 1999, Kozlowska 1989, Van Kessel et al. 1989). Nematodes are convenient indicators because their trophic functions can be deduced by observing their easily observed digestive system morphology (Bongers and Bongers 1998) because most soil nematodes are transparent and dissection is not required for taxonomic identification. Nematodes inhabit almost all terrestrial and aquatic environments (marine and freshwater) and similar nematode species have similar r-or-K selection strategies. Species from related taxa, therefore, have similar responses to environmental perturbation. Recently, however, it has been shown that some nematode species manifest characteristics of both strategies (Lee 2002). For example, when Caenorhabditis elegans first colonizes a soil it has high reproduction and a short adult survival period (r-strategy). When populations increase and competition is high it produces dauer larva (a developmentally arrested developmental stage produced under stress conditions) are produced which survive for long periods (K-strategy). When there is enrichment of soil (e.g. added organic matter), there is a rapid increase in the rate of bacterial-feeding nematode colonization. This is followed by more persistent species as resources are used (Bonger and Ferris 1999). Plant parasitic nematodes are different. They tend to respond in an inverse way to environmental enrichment. Study Site: We conducted this study at the KBS/LTER site, which was established in 1988 to study the ecology of diverse agricultural and native 49 ecosystems (Robertson 2008b). KBS/LTER is located at 42°24’ N, 85° 24’ W, Hickory Corners, Michigan. Soils at KBS are Typic Hapludalfs in the Kalamazoo (fine loamy, mixed, mesic) and Oshtemo (coarse-loamy, mixed, mesic) series (Robertson et al. 1993 and F reckman & Ettema 1993). The KBS/LTER focus is designed to compare several agricultural systems with successional field and forest ecosystems. This dissertation seeks to accomplish a very small part in the challenge of sustainable development (Francis, Poincelot & Bird, 2006). An increased understanding of ecosystem services and biodiversity by the public is an important prerequisite for appropriate social and behavioral change. When we understand what can be done to improve an ecosystem biodiversity and its services, appropriate innovations can be put into practice (Bailey, 1916). The objective of this research is to determine the comparative nature and dynamics of the nematode community structure associated with six ecosystems (three agricultural, two old-field succession, and a deciduous forest) at the Michigan State University Kellogg Biological Station/Long Term Ecological Research (KBS/LTER) site in Hickory Corners, Ml. We tested the following hypothesis: 1) Nematode taxa, biodiversity, evenness and maturity vary in their responses to ecosystem management. Forest and old field succession ecosystems will have the greatest biodiversity, evenness and maturity indices. Conventionally-tilled and no-till (higher herbicide use) systems will have the lowest values for these parameters. 2) The sensitivity 50 to ecosystem disturbances does not vary among nematode taxa and nematode community structure. MATERIALS AND METHODS KBS/LTER: Six KBS/LTER ecosystems: deciduous forest, two old-field successions, conventional tillage, no-till, and bio-based systems were selected for nematode community structure analysis (Table 2.1). The deciduous forest has no history of tillage or cutting. One of the successional sites was last tilled circa 1950 (mid-succession) and the other in 1989 (early succession, occasional burning). The 1989 site is comprised of grasses and forbs and is burned occasionally to keep it in an early succession stage; whereas the ~1967 site has more shrubs and small trees and is considered to be in a mid-succession stage. The agricultural systems consist of corn, soybean and winter wheat rotations. The conventionally till and no-till ecosystem use conventional pest management practices. The bio-based system is tilled and has cover crop. No fertilizers or pest control inputs are used. At the 2007 sampling dates the fields were planted to wheat, and in 2008 to corn. Sampling: Soil samples were collected with a one-inch-in-diameter soil corer. Each core consisted of approximately 100 cm3 of soil from the top 10-15 centimeters of soil. In 2006 and 2007 the deciduous forest and mid-succession were sampled by taking five soil cores taken in a 1.0-meter diameter circle around each KBS/LTER sampling flag (makers dividing the 1 ha plot into 5 sections) in each of the three KBS/LTER plots, resulting in a total of 15 51 composite soil samples each ecosystem (Table 2.1). In 2008, the deciduous forest plots was divided in half, and each section had one composite sample (made of five samples), providing six replications instead of three. The mid- succession treatment was not sampled in 2008. For the conventional-till, no-till, bio-based, and early succession plots (Table 2.1), a composite soil sample was taken from each 1.0 hectare plot. Each composite sample consisted of five subsamples taken one meter from the KBS/LTER sampling station flags (makers dividing the 1.0 ha plot into five subsections) from each replicate on September 25, 2007, December 12, 2007 and September 25, 2008. There were four ecosystems and six replications totaling 24 composite samples. Samples were placed in plastic bags and stored in at 5 C°. Nematode Extraction, Identification and Population Assessment: The soil samples were processed using a modified Jenkins (1964) centrifugation and flotation technique (Appendix 1), using 100 cm3 subsample. Subsequently a 1.0 ml aliquot was placed in a cover slip-bottom dish and all the nematodes present were identified to the lowest taxon possible. Additionally, Tardigrades and Oligocheates abundance was recorded. DeLey’s and Blaxter’s (2002) system of classification was used for most nematode classification. A summary of the references for specific identification is presented following the reference section. Photographic images were taken of most nematodes taxa reported at found in this study. Images can be found at 52 www.nemasoil.com. Microscopes Nikon Eclipse TS100 and E600W, and Spot Insight Firewire camera and program were used for the pictures. For the nematode-specific maturity, structure and enrichment indices, Bongers (1990) c-p values were used. Bongers used an older system of classification, and for the c-p value calculations, this systems were used. Bongers c-p values are listed by family, so the differences did not affect the genus Or species level, but the family in which nematodes were placed. Individual nematodes were separated into trophic groups according to Yeates et al. (1993). The absolute value for each trophic group (mean of the sum of all the nematodes within a trophic group, for example, bacterievores) per treatment and sampling date was analyzed using Minitab 15 software (2008). Nematode Community Structure Analysis: Data from the three sampling dates were combined to characterize the ecosystems (forest, field succession, no-till, bio-based, and conventional till). The guild (trophic group & Bongers (1990) c-p value), absolute frequency, relative frequency, total absolute density, mean absolute density and the relative density were calculated for each taxon recovered from each system using the following formulas: Absolute frequency (%) = 100*(number of samples containing taxa/ number of samples collected) Relative frequency (%) = 100*(frequency of taxon/sum frequency of all taxa) Sum Absolute Density = Total amount of nematodes in each individual taxa per system Mean Absolute Density = Sum Absolute Density of nematodes] number of samples collected 53 Relative Density (%) = 100*(number of individuals per taxon per system/total sum of all individuals in the treatment) Sorensen’s (1948) Similarity Index was used to compare the six ecosystems. In our case, we used presence (1) or absence (0) of taxa for comparison. The calculation was performed with the taxa recovered from the three sampling dates combined. The equation is: Index of Similarity = c , where 1/2 (a + b) c = number of species that the two samples or areas have in common a and b= the number of species in samples or area a and b. A Canonical Correspondence Analysis Bi-plot was performed to determine the relationships among specific taxa, ecosystem sites and their characteristics for use as best bioindicators. The Canonical Correspondence Analysis Bi-plots were created using XLSTAT (1995-2009) software. The mean number of individual nematodes per taxa per 100 cm3 of soil per ecosystem for the three sampling dates combined was used. Soil elemental carbon (%), elemental nitrogen (%), bulk density, and pH data were obtained from the KBS/LTER website data catalog and used as a quantitative variable in the analysis. A permutation test was performed (1000 permutations) and a symmetric chart of the sites and taxa created. Correlations were used for the calculations. In the chart, points represent the number of nematodes by taxon (genus, species or family); abundances decrease in distance from each site or variable point in a unimodal way (ter Braak and Smilauer 2002, Neher et al. 2005) Ecosystem biodiversity, maturity, stability and abundance were described and compared using methods and equations for biodiversity, 54 evenness, stability and enrichment as presented in Table 2.2. They were calculated for. the ecosystems and sample dates (Tables 2.1 & 2.2). Taxa means, standard errors and 95% confidence interval differences for nematodes per 100 cm3 of soil in each ecosystem and each sampling date were calculated using Minitab 15 and Microsoft Excel software. The trophic group (Yeates et al. 1993) and the c-p value (c = colonizer, p = persister; Bongers 1990) were also determined and presented as Guild. The trophic groups are represented by letter designations: b = bacterievore, f= fungivore, o = omnivore, h = herbivore, and c = carnivore. The c-p value ranges from 1-5. A value of one represents taxa with rapid colonization (r-strategist) that do not necessarily need high ecosystem maturity, and respond quickly to new food sources. K strategy taxa needing more ecosystem stability (considered persisters) are given values closer to five (Appendix 2-4; Bongers 1999 and 1990). “Images in this dissertation are presented in color.” RESULTS Nematode Community Structure Analysis: Each of the six ecosystems had a unique nematode community structure. A total of 67 taxa (nematode, Oligocheates and tardigrades) were recovered from the KBS/LTER deciduous forest site (Table 2.3). Eighteen taxa were recovered from the mid-succession (Table 2.4) and 51 taxa from the early succession (Table 2.5). A total of 38, 43 and 40 taxa were recovered from the no-till, bio-based and conventional tillage systems, respectively (Tables 2.6-8). 55 The Sorensen (1948) Index of Similarity for the three sampling dates indicated that the agricultural systems had 70% or more taxa in common (Table 2.10). The systems with the most taxa in common (79%) were the no-till and the bio-based. The forest and agricultural systems were less similar. They only had circa 50% of taxa in common (51-56 %). The deciduous forest ecosystem had 64% taxa in common with the early succession. The early field succession was most similar to the bio-based, having 68% taxa in common (Table 2.10). The Canonical Correspondence Analysis indicates that the nematode communities associated with the agricultural systems are similar to each other (Figure 2.1). The deciduous forest and the field succession were different from each other and from the agricultural systems. The deciduous forest ecosystems had several taxa that were not found in any of the other sites. The deciduous forest had the highest % elemental organic carbon and nitrogen. The highest bulk density and pH was associated with the agricultural systems (Figure 2.1 and Appendices 28-31). Ecosystem biodiversity, maturity, stability and abundance: the highest Absolute Population Densities (mean of total nematode per 100 cm3 of soil) in September, December 2007 and September 2008 were found in the field successions (340, 519 and 1677 nematodes per 1006m3 respectively). In all three sample dates significantly more nematodes were recovered from the field succession (AOV p = 0.022, p = 0.001 and p = 0.001 respectively, Tables 2.11- 13) than the forest and often the agricultural sites. The lowest population densities were recovered from the deciduous forest in the September 2007 (3? = 56 124.89 nematodes per 100cm3 of soil) and 2008 (f = 324.2) samples. In December 2007, the bio-based site had the lowest value (Tables 2.11-12). Taxonomic distribution mainly by genus in the different sites are combined by date in Tables 2.3-8, separated by date and site in Appendix 2-4 and Appendix 8-25. Family distributions can be seen in Figure 2.6 for all sampling dates combined and Appendix 5-7 by sampling date. The Deciduous forest ecosystem had the highest Total Number of Taxa (sum number of taxa found in each ecosystem and replications) at all sample dates. In 2007, the no-till treatment had the lowest Total Nematode Taxa. In September 2007, bio-based and mid-succession field were equally low in Total Nematode Taxa. The conventionally tilled treatment had the lowest total nematode value in September 2008 (Tables 2.11-13). For all sample dates the Mean Number of Nematode Taxa (mean species richness) was significantly higher (p< 0.05) in the field succession site. The lowest value in the September 2007 sample was associated with the conventional tillage, while the lowest value in December was from the no-till system (Tables 2.1 1-13). The highest Shannon-Weiner Diversity Index values in September 2007 were associated with the mid-succession (E = 1.95) and deciduous forest (3? = 1.76) ecosystems, indicating greater nematode diversity. The lowest value was from the conventional tillage system (3 = 1.42). The difference between the forest and succession ecosystems and the conventionally tilled system was significant (p = 0.048, AOV; T-test (p = 0.016) between forest & conv. till; Table 57 2.11). No-till and bio-based indices were not significantly different from the other systems sampled. In December 2007 and September 2008, there were no significant differences in the Shannon-Weiner Diversity Index values among any of the ecosystems (l’ ables 2.12-13). The results for Simpson Dominance (higher numbers indicate greater diversity) in September, 2007, were similar to the Shannon-Weiner Diversity results. The deciduous forest and mid-succession field values were significantly (p = 0.013, AOV) lower, indicating greater diversity than the conventional tilled ecosystem (Tables 2.2 & 2.11). No difference was found among the no-till and the bio-based systems and the remaining ecosystems. In December 2007 and September 2008, no difference was found for Simpson Dominance among the ecosystems (Table 2.12-13). In the September 2007, Evenness was higher in the deciduous forest than all other ecosystems sampled (P = 0.006 AOV, Table 2.11). The conventionally tilled systems (bio-based and conventionally tilled with conventional fertilizer and pest management) were significantly lower than deciduous forest and the mid-succession. There was no significant difference in Evenness in the December 2007 and September 2008 samplings (Table 2.12- 13). The deciduous forest had a significantly (p< 0.001, AOV, Table 2.11) higher value in the Maturity Index (ZMI or MI 15) total with plant parasites, than the other sites in the September 2007 sampling. A higher Maturity Index value indicates greater ecosystem maturity or stability. When non-nematodes 58 (tardigrades and Oligocheates) were added in the analysis in September 2008, the deciduous forest was significantly (p = 0.023, T-test, Table 2.13) higher in ZMI than the conventional till. The Maturity Index 1-5 (Ml, without plant parasites, Table 2.2), showed no difference among any of the sample dates (Tables 2.11-13). In September 2007 the Maturity Index 2-5 (only c-p values 2-5 and non-herbivores included, Table 2.2), there was no difference found with an AOV test (p = 0.519), but a T- test (p = 0.059) revealed differences with 91% confidence between the mid- succession and the no-till system, indicating greater ecosystem stability in the mid-succession ecosystem than in the no-till system, which would be expected (Table 2.11). In the December 2007 and September 2008 samples, there were no differences among the ecosystems for the Maturity Index 2-5 (Tables 2.12 & 2.13). In the December 2007 sample, when non-nematodes such as Tardigrades and Oligocheates (and plant parasites) were included in the analysis of the Ml25, there was statistical difference (p = 0.002, AOV, Table 2.12) among the ecosystems. The deciduous forest had the highest Maturity Index 2-5 value (‘55 = 2.92), indicating greatest ecosystem stability, second highest was the bio- based system and the lowest value, was found in the no-tilI ecosystem (Y = 2.27). The deciduous forest was statistically different from the no-till and conventionally tilled ecosystem, but not different from the bio-based or the early succession. A similar result occurred in September 2008, when plant parasites and non- nematodes (Oligocheates and tardigrades) were added to the analysis (le, Ml 1-5 59 + PPI and non-nematodes), a T-test revealed a significant (p = 0.023) difference between the deciduous forest and the till ecosystem (Table 2.13). In September 2007, the highest value for the Plant Parasitic Index (PPI) was found in the field succession (E = 3.91, p = 0.000, AOV). This was caused by the dominance of Xiphinema sp. in the mid-succession (grasses and forbs). Xiphinema has the highest c-p value assigned to nematodes. The deciduous forest had second highest value (PPI = 2.83) statistically (p< 0.001, AOV) higher than the other three remaining ecosystems (no-till= 2.21, bio-based = 2.27 & conv.-till= 2.23, Table 2.11). No-till had the lowest PPI value, indicating the lowest ecosystem stability when measured with plant parasitic nematodes. In December 2007, the highest PPI value was found in the deciduous forest ecosystem (PPI = 2.74); whereas, the lowest value was associated with no-till (2.39). There was significant (p = 0.032, T-test) difference between these two ecosystems (Table 2.10). The second highest value was found in the early succession field (2.57). The forest or field succession had the highest PPI value for both September and December 2007 and the no-till ecosystem the lowest. In September 2008 there was no significant difference between the treatments (Tables 2.12-13). In September 2007 the highest values for the Structural Index (higher values indicate greater environmental stability and ranges from 0-100, Ferris et al. 2001) were found in the mid-succession field (63.23), which was significantly higher (28.88, p = 0.028 T-test), and more than twice value of the no-till ecosystem. The second highest value was found in the Deciduous Forest 60 (49.27). In December 2007 and September 2008, there was no significant difference between the five ecosystems for the Structure Index (Tables 2.12 and 13). In September 2007, the deciduous forest had the highest Enrichment Index value, indicating an ecosystem with more nutrients. The deciduous forest had a greater proportion of bacterial and fungal feeding nematodes in the lower c-p values (r-strategist). The bio-based had the lowest enrichment, but there was no statistical difference between the treatments (p = 0.833, AOV). In the December 2007, however, there was significant (p = 0.004 AOV) difference between the ecosystems. The deciduous forest had the highest value (86.78) for the enrichment index and the no-till ecosystem had the lowest value (69.73). The bio-based had the second highest value (83.12) which was significantly different from the no-till ecosystem. For all the ecosystems, the Enrichment Index values were higher in December, compared to September. In September 2008 there was no significant difference between for the Enrichment Index between the ecosystems (Table 2.11-13). In the September 2007, the mid-succession field (0.90) and the deciduous forest (0.86) ecosystems had the highest value for the Nematode Channel Ratio. As the Nematode Channel Ratio approaches 1.0, it is more bacterial feeder dominated, and as it approaches to 0.0 it is more fungal feeder dominated. The no-till ecosystem had the lowest Nematode Channel Ratio value (0.606). With an AOV, no significant difference was found between the ecosystems (p = 0.093, Table 2.11), but T-tests, revealed that there was 61 significant difference between the deciduous forest and the no-till (p = 0.045, T- test) and the field succession and the no-till (p = 0.015). In September 2008, the deciduous forest ecosystem the highest (p = 0.011 AOV, Table 2.13) Nematode Channel Ratio value and the bio-based had the lowest value. Trophic Group Abundance: In the September 2007 and 2008, there were no statistically significant differences in the number of bacterievores among the five ecosystems (p = 0.05, Figure 2.2, 4). In December 2007, however, there were more bacterievore nematodes in the early succession than all the other ecosystems (p = 0.035 AOV, Figure 2.5). In September and December 2007 and September 2008, there were no significant differences (p = 0.05, 95% Cl) among the ecosystems for the population density of carnivorous nematodes (September 2007 p = 0.105; December p = 0.279 AOV; Figures 2.2-5 & Appendices 12-14). In the September 2007 sample there were no differences among the six ecosystems for the population density of fungivores (p = 0.216, AOV). In the December sample, however, there were significantly more fungivore nematodes in the early succession compared to all other treatments (p < 0.001, AOV). In September 2008, the early succession had the highest number of fungal feeding nematodes and the forest had the lowest number (p = 0.05, 95% CI). The bio- based had the second highest value and the no-till and bio-based had a similar number of fungivores (Figures 2.2-5 & Appendices 15-17). In September 2007, no statistically significant differences were found in the number of herbivores among the systems (p = 0.104 AOV). In December 62 2007 and September 2008, however, more herbivorous nematodes were recovered from the early succession, with the least number of herbivorous nematodes associated with the forest (p = 0.05, 95% CI). The agricultural systems had intermediate population densities of herbivores (Figures 2. 2-5 & Appendices 18-20). In September 2007, a higher number of omnivores were found in the mid- succession, followed by the bio-based. The lowest populations densities of omnivores was associated with the no-till site (p = 0.071, AOV). In December 2007, the early succession had the highest number of omnivores (3.667) followed by the till (2.33). The early succession field was significantly higher than the no-till, bio-based and forest (p = 0.017, AOV). No significant difference was found in December 2008 (Figures 2. 2-5 & Appendix 21-23). In December 2007, there were significantly more Tardigrades and Oligocheates in the deciduous forest (29.64; p = 0.000 AOV) than in the other systems. The early succession field had the second highest value (9.17) and the bio-based had a mean of 0.83. No Tardigrades or Oligocheates were found in the no-till and conventional till systems. In September 2008, the deciduous forest had significantly (p = 0.05 95% Cl) more tardigrades and Oligocheates than the bio-based and the conventional till systems. (Figures 2.1-5 & Appendices 24-25) Taxon Characterization (alphabetically): 1) There were no significant (p = 0.05) differences among the ecosystems for genus Acrobeles in September 2007. The highest values, however, were associated with the deciduous forest and in the mid-succession. The no-till and bio-based had no Acrobeles, and the 63 till had a low population density. In the December 2007 samples, there was a significant difference (p = 0.05, 95% CI). The highest value (35 = 22.1) was recovered from the deciduous forest and the lowest values were found in the bio- based (2 = 0), 1989 old field succession (E = 1.7) and no-till (Y = 3.30). No significant differences were observed among the September 2008 samples (Appendix 2-4 & 8-25). 2) The genus Aphelenchoides was found in all the ecosystems tested, and in similar numbers for both the 2007 September and December sampling. In September 2008, there were significantly (p = 0.05, 95% Cl) more Aphelenchoides nematodes in the no-till than the forest. 3) There was significant difference between the treatments for the mean abundance of the genus Aphelenchus in both the September and December 2007 sampling. For both dates, the deciduous forest had one of the lowest values, and the no-till was significantly (p = 0.05) higher than the deciduous forest. The till and the bio- based had both higher values than the deciduous forest, but did not reach significant difference because of their variability. The successions were a mixed story. In September 2007, there were no Aphelenchus found in the 1967 old field succession and in December the highest number of the genus Aphelenchus was found in the 1989 old field succession. In September 2008 the early succession, bio-based and till had higher numbers (p = 0.05, 95% CI) of Aphelenchus than the deciduous forest. 4) Members of the family Criconematinae were only found in the deciduous forest and the field successions in both September and December 64 samples from 2007. They were not detected in any of the agricultural systems (Appendix 5-6. In September 2008, there were significantly (p = 0.05, 95% Cl, Appendix 4, 7) more nematodes from the family Criconematidae in the forest, compared to all the agricultural systems. A low population density was recovered from the early succession. 5-7) The genera Bastiania and Belondira were only found in the deciduous forest in December 2007, and most samples did not contain these genera (Bastiana E = 1.40 and SE= 1.40, Belondira 0.70 mean individuals per sample in 100 cm3 of soil and SE= 0.70). The genus Bunonema was only found in the deciduous forest and the early succession in December 2007 and September 2008 (Appendix 2-4). 8-9) the genus Cephalobus was recovered from all the ecosystems and in all three sampling dates except for the mid-succession in September 2007. In September 2008, Diphtherophora was only found in the agriculture and early succession ecosystems. The early succession was significantly (p = 0.05) higher than the forest. In December 2007, the number of Diptherophora in the agriculture and early succession was higher than the forest, and in September 2007 Diptherophora was only found in the no-till and bio-based ecosystems. 10) The genus Discolaimus was only recovered in the deciduous forest on December 2007. Disco/aimus has a cp value of 5, which favors very stable environments. It is expected to be found in deciduous forest but the variability was high because it was found only in very few samples (2 = 0.70, and SE= 0.70; Appendix 3). 65 11) There were significant differences for the number of members of the genus Eucephalobus found per 100 cm3 of soil in the different treatments tested in the December 2007 sample at KBS/LTER, Michigan. The early succession had significantly (p = 0.05) more Eucephalobus than both the deciduous forest and bio-based ecosystems. 12) The highest number of Helicotylenchus was found in the bio-based (Dec. 2007 and Sept. 2008) and the till in September 2007. The lowest number was in the forest soil. Helicotylenchus was only found in the agriculture and early succession ecosystems in September 2008. 13) The genus Hemicycliophora was only found in the deciduous forest in all the soil sampling dates. 14-15) Panagrolaimus and Plectus seem to be represented in most of I the ecosystems tested in 2007 September, 2007 December and September 2008. There was no statistical difference between the treatments 2-4) 16) The Genus Pratylenchus was found in all the ecosystems tested at KBS/LTER except in the deciduous forest (p = 0.05, Appendix 2-4). This was true for the 2007 September and December sampling. In 2008, the lowest value for Pratylenchus was found in the deciduous forest ecosystem, it was abundantly represented in the agricultural and early succession ecosystems. 17) The family Rhabditidae (genera Rhabditis, Rhabditella, and Mesorhabditis) was abundant in all ecosystems tested. It was generally more represented in the deciduous forest and the field successions than in the agricultural treatments. In the December 2007 sample, the deciduous forest had 66 significantly more Rhabditidae nematodes than the no-till, and the till treatments (p = 0.05, 95% Cl). This difference was not observed in the September 2007 sample. 18-19) In the September 2007 sample, there were significantly more (p = 0.05, 95% CI) Tylenchorhynchus nematodes in the mid-succession than in all other treatments measured. Also in September 2007 there were significantly (p = 0.05, Appendix 2) more Tylenchus nematodes in the no-till and bio-based ecosystems than in the deciduous forest ecosystem. The genus Tylenchus was found in all the treatments tested in all three dates. 20-21) Xenocriconemella macrodora was only found in the Deciduous Forest ecosystem in all three dates. This nematode was only found in a few of the samples tested in the deciduous forest, making for high variability. The genus Xiphinema was mostly found in the field successions and deciduous forest ecosystems. In the 2007 September sample there were significantly more (35 = 114 individuals per 100 cm3 of soil, p = 0.05) in the mid-succession than all other treatments measured (no-till E = 0, bio-based E = 0, till E = 1.33 and deciduous forest 2 = 1.78). In the December 2007 sample, the genus Xiphinema was only found in the early succession and in the deciduous forest. In September 2008, Xiphinema was only found in the early succession. For the three sampling dates, there was no difference in the number of unidentified nematodes between the treatments tested. The nematodes that were not identified were in bad conditions (dead & decomposing) or were in a life stage 67 were identification was made difficult. The number of unidentified nematodes was minimal all soil sampling dates (Appendix 2-4 8 Figure 2.6). 22) In December 2007 and September 2008, Oligocheates (Annelida) were significantly more abundant in the deciduous forest compared than the agricultural treatments (p = 0.05, Appendix 3-4). 23) In December 2007, Tardigrades (Arthropoda) were only found in the deciduous forest and the early succession. The deciduous forest had significantly (p = 0.05) more Tardigrades than all the agricultural treatments. In September 2007, Tardigrades where not counted. In September 2008, Tardigrades were very abundant in a sample in the no-till ecosystem, they were also found in the forest and the early succession (Appendix 34). DISCUSSION Nematode Community Structure Analysis Multivariate Analysis: The agricultural treatments are closely associated with each other (Fig.1). Also, the combined early and mid-successions sites have a low association to the no-till and conventional till sites. The forest ecosystem was not closely associated with any other system. Agriculture management (corn/soybean/wheat) had an effect on nematode community structure, as indicated by the separation from the field successions and forest. This could have been caused by the different vegetation and plant biodiversity found in the crop rotations compared to the forest and field successions. Freckman and Ettema (1993) performed a canonical discriminant analysis of their KBS/LTER nematode data collected in 1991. The analysis separated the 68 agricultural treatments into high chemical input (no-till and till) and bio-based (organic). The early succession (at that time on had 2 years since the last tillage) and the succession with no history of tillage (KBS/LTER treatment 8, mowed yearly) formed clusters apart from the agricultural treatments, but closer in distance to the bio-based (organic) than to the high chemical input no-till and conventionally tilled systems. Their analysis is comparable to our Canonical Correspondence Analysis (Figure 2.1). Freckman and Ettema (1993) found that cumulatively, the genera Panagrolaimus, Pratylenchus and Aphelenchoides explained 86% of the dispersion of ecosystems in the canonical discriminant analysis. Pratylenchus had a lower abundance in the early succession and the never-tilled (KBS/LTER Treatment 8) than the agricultural plots. We found that Pratylenchus was also significantly more abundant in the agricultural plots, compared to the forest, and the field succession. Our data did not show significant differences in the treatments for Panagrolaimus numbers at any of the sampling dates. The September and December 2007, samplings did not show a significant difference in the number of Aphelenchoides among the treatments. In September 2008, however, no Aphelenchoides were found in the forest and the highest abundances were found in the no-till and field succession. Ecosystem biodiversity, maturity, stability and abundance: In all sampling dates, the deciduous forest ecosystem had the lowest absolute population density (Tables 2.2 & 2.11-13). Freckman and Ettema (1993) also reported low absolute population densities in the woody site and 69 higher population densities in the early succession site, that was last tilled in the spring of 1989 (KBS/LTER treatment T7). Neher et al. (2005) also reported lower abundance of nematodes in forest compared to an agricultural system. In all sampling dates the highest absolute values (mean total number of nematodes found per 100 cm3 of soil), were associated with the mid-succession and early succession (Table 2.11-13). Freckman and Ettema (1993) found that the high input agricultural systems (no-till, conv. till) and the bio-based (organic) had the highest absolute values. However the ecosystems have changed since 1993. Higher observed plant diversity in the early and mid-succesional fields, could, in part, explain the reason they had the highest nematode absolute values for all sampling dates (T ables 2.11-13). Also, the field successions are the highest in soil carbon sequestration (Fig 1). More organic matter sequestration indicates more plant growth and food substrate for bacteria, and fungi, and therefore more food for nematodes in the different levels of the food chain. Higher plant diversity would also provide niches for more specialized nematodes, especially the plant parasites. The absolute vales (divided by families, Figure 2.6) of nematodes were distributed differently in each ecosystem. In the December 2007 sampling, the deciduous forest ecosystem had the highest number of Total Nematode Taxa (sum of taxa in all replications, Table 2.12). The absolute density was relatively low (518.6) compared to the field succession (1833.7). In the forest, however, the number of taxa was 46, while the field succession had only 35 taxa. The no-till ecosystem had lowest number of nematode taxa (19) while the conventional till and the bio-based systems had 70 both a value of 27. In September 2007 sampling, the deciduous forest had the highest number of Total Nematode Taxa. In September 2008, the early succession and the forest had the highest number of taxa. The deciduous forest appears to be the most stable and undisturbed ecosystem, followed by the field successions ecosystem. As expected, the biodiversity associated with the deciduous forest system was greater than that of the other systems. The agricultural systems had the lowest number of taxa. Agriculture, especially large monocultures, reduces plant biodiversity. This generally causes a “reduction in animal and microbial diversity which result in a loss in ecosystem function (Swift and Anderson, 1994). This does not only apply to tillage disturbance because some of the lowest numbers of taxa values were found in the no-till ecosystem. Even though the deciduous forest had the lowest Absolute Densities it had the highest total number of nematode Taxa. Stable undisturbed ecosystems tend to have greater biodiversity, and the organisms are distributed more evenly, while disturbed environments have a few organisms dominating the ecosystem (Wilsey & Potvin 2000). In our study, nematodes where distributed more evenly in the deciduous forest than in all other ecosystems in September 2007 and 2008 (Tables 2.11 & 2.13). Neher et al. (2005) also found that the forest had lower absolute densities of nematodes and higher family diversity than agricultural sites and that disturbance tended to reduce family richness. Freckman and Ettema (1993) reported a higher total number of taxa in the succession never tilled (mowed yearly, KBS/LTER treatment 8). 71 The field successions systems had the highest Mean Number of Nematode Taxa (mean taxonomic diversity). This was true for all three sampling dates (Tables 2.11-13). F reckman and Ettema (1993) also reported that taxonomic diversity was greatest in the successional treatments at KBS/LTE'R. The deciduous forest had lower Mean Number of Nematode Taxa (mean species richness) than the field successions, even though the Deciduous Forest had the highest Total Nematode Taxa among the ecosystems. This can be explained, even though the Total Nematode Taxa was high in the deciduous forest, the Absolute Population Densities was low, and the Evenness was high. The taxa were dispersed in the different samples, and samples were not generally dominated by a few taxa. Commonly, in one sample we found taxa that were not found in other samples. Even though the Total Nematode Taxa per Treatment was high, the Mean Number of Nematode Taxa per sample was low (Tables 2.11-13). The value for the Mean of Total Nematodes in 100 cm3 of soil (Absolute densities) in the field succession was higher compared to the other ecosystems evaluated. This can also in part explain why the Mean N° of Nematode taxa were higher in the field succession ecosystems compared to the forest which had a higher Total Nematode Taxa value. The field succession ecosystems often had double the nematodes recovered than the deciduous forest ecosystem. Even though it had less Total Nematode Taxa (includes taxa from all the samples) than the forest, it had so many nematodes per sample that each sample had more taxa than the deciduous forest. Several taxa were recovered only in the forest (Figure 2.1). Some of these were encountered only 72 once. This resulted in a high absolute number of taxa, but a low mean number of taxa. On December 2007, the no till ecosystem had the lowest Mean Number of Nematode Taxa per sample, and the lowest Absolute Value of Nematode per sample compared to all other ecosystems. It also had the lowest Total Nematode Taxa per Ecosystem. So the no-till had few nematodes, both in diversity and quantity. In general, agricultural systems with the greatest disturbance (chemically or mechanically) were those with the lowest in the mean number of nematode taxa. On September 25, 2007, the conventional till had the lowest value. In December 2007, the no-till (additional herbicide use) was the lowest and in September 2008 the conventionally tilled system had a lower value than the field succession (p< 0.05; Tables 2.11-13). These data support the hypothesis that disturbance reduces biodiversity (\Nilsey and Potvin 2000). The Shannon-Weiner diversity values for September 2007 indicate greater diversity in the field succession and the deciduous ecosystems, compared to the conventional till agriculture ecosystems. F reckman and Ettema’s (1993) previous study of the nematode community structure at KBS/LTER reported a statistical difference (for Shannon-Weiner Diversity H) between the succession never-tilled systems (mowed yearly, T8 at KBS/LTER) and all the agricultural systems sampled at KBS/LTER. In December 2007 no significant difference was found among these systems. The cause is suspected to be increased soil moisture (Table 2.14). In December 2007, the soil was wet and there was very limited plant growth. There was also decomposing litter in most 73 Of the systems, especially in the deciduous forest. This drastically increased the Enrichment Index. There were more bacterial feeders dominating the ecosystems decomposing the litter in December 2007, which is believed to have masked the differences found in September 2007 (Tables 2.11-13). Wetting can act as an activating agent, increasing the activity and population density of opportunistic organisms. This is part of what is called the “Sleeping Beauty Paradox” (Lavelle 1996 and Brown et al. 2000). These referred to the increase of activity that micro-organisms exhibit after passing through earthworm gut, or the increased activity created by the earthworms’ mucus, through the creation of an optimal moisture and temperature regime. We found that water increased the activity of soil organisms (Chapter 4). Also, since the conditions are ideal in moist environments for bacterial replication, it is logical that bacterial feeders would increase. This was observed in our results. In December 2007 and September 2008 (moist soil), the bacterial feeder proportion of the population was higher compared to the September 2008 sample, when the soil was dry (Tables 2.11-14). Similar biodiversity results were obtained with Simpson’s Dominance as with Shannon-Weiner Diversity estimations. In September 2007, Evenness was highest in the deciduous forest, second highest is the field succession, and lowest in the conventional till system. This was expected. In December 2007, no difference was found. It is possible that the reason there was no significant difference for Evenness for the December 2007 is that the samples were bacterial-feeder dominated. In the December 2007 forest sample, the nematode channel ratio (higher number 74 indicates more bacterial feeders) was significantly higher than all other ecosystems sampled. It also had a high Enrichment Index value. This indicates that there was likely a rapid increase of bacterial feeders that dominated the ecosystem when the soil was wet and covered with decomposing leaves (from the deciduous trees) that provided nutrients in December 2007. This probably drove the evenness down, since the bacterial feeders dominated in this period of the season. Freckman and Ettema (1993) reported higher Maturity Index values in the succession never-tilled system (mowed yearly, KBS/LTER T8) and the succession-last tilled in 1989 (early succession) compared to the agricultural systems. There was no significant difference among the agricultural systems. In our research, no significant differences were detected in the 2007 and 2008 sampling dates for the Maturity Index values among the ecosystems. However, the ecosystems have changed since the Freckman and Ettema sampling in 1991. Even though Neher et al. (2005) said that Maturity lndices have the ability to respond to specific disturbances, this has not been consistent by region, ecosystem and season. Neher et al. (2005) reported that the Maturity Index was inconsistent in discerning differences between disturbed and undisturbed ecosystems. They also reported that nematode family composition was more effective in separating between disturbed and undisturbed ecosystems and indicating ecosystem function. A greater understanding of the Maturity Index effectiveness is needed before it can be applied universally. 75 The results with the Maturity Index 2-5 from September 2007 indicated that the field succession was a more stable ecosystem than the no-till. It Probably, the crops used and the agronomical inputs had an effect on the Maturity Index 2-5 of the no-till ecosystem. This in part shows that nematodes are sensitive to more than the physical disturbance, which has been reported by Neher (2001). Because we found no difference in the Maturity Index when all the c-p ‘ values (1-5, Bongers 1990) were included and found differences with the Maturity Index with only the c-p values 2-5, we, in part, confirm the previous conclusions that the lower cp-value of 1 masks the effect of the ecosystem. This relates to the rapid capacity of reaction and reproduction to the nutrient enrichment or rapid death when nutrients are limited (Bongers and Bongers 1998). For the Maturity Index 2-5 in the December 2007 sampling, there was no difference found, but when other organisms such as Tardigrades and Oligocheates and plant parasitic were included in the analysis, there was difference among them (p = 0.002 AOV). The forest had the highest Maturity Index 2-5 value, indicating greater ecosystem stability. The addition of non- nematodes was based on the observation that Tardigrades and Oligocheates (order Enchytraeida) were only found in only the non-agricultural and least disturbed ecosystems, including the deciduous forest and the field succession (in this research). This interpretation needs to be taken with caution, because no research was done by us to determine the cp-value given (5) and they are not closely related to nematodes. But, it did, however, provide a distinction between 76 the ecosystems. For some reason, the Oligocheates and Tardigrades in the December sampling were only found in the majority in the Deciduous Forest and some were found in the succesional field. This could, in part, be based the conditions found in these ecosystem that favored their survival. Many Tardigrades feed on mosses and lichen, and are associated with leaf litter, mosses, lichens and fungi, certain species of Tardigrades are reported to predate on nematodes (Lehmann et al. 2007). Then soil Enchytraeida (Oligocheates) were said to be detritivores by Sampedro & Dominguez (2008) and to be secondary decomposers by Scheu & Falca (2000) feeding on fragmented litter, microbial residues and microorganisms. They are likely to be found in decomposing organic matter; like the soil covered with deciduous leaves found in our forest. This seems to be particularly true at KBS/LTER. The authors have observed Oligocheates in samples from agricultural plots, such as Sugar Beet fields, from sites other than KBS/LTER. Enchytraeida are commonly extracted from soil using the modified Jenkins centrifugation and flotation technique. The highest Plant Parasitic Index (Table 2.2) value was found in the September 2007 early successional system this was the result of an abundance of Xiphinema spp. (Table 2.11). Xiphinema spp. have a c-p value of 5, the highest c-p value possible Bongers (1990) scale. The abundance of grasses and forbs in the field succession might have been a cause for this abundance. Xiphinema spp. seem to be sensitive to both chemical and physical disturbance, as there low abundance and almost total absence of Xiphinema from any of the row crops agricultural systems in the three sampling dates (Appendix 2-4). 77 Freckman and Etttema (1993) also found Xiphinema spp. in the least disturbed ecosystems. They were detected in the Poplar, the early succession, with history of tillage and in the mid-succession, never tilled, but mowed (KBS/LTER Treatment 8), but there was no Xiphinema detected in the row crops with corn, wheat and soybeans rotations in all the different managements (till, no-till, low- input and bio-based). Neher (1999) did not report Xiphinema in either the conventional or organically managed agricultural soils. Yeates et al. (1999) did not report Xiphinema in the annual (maize) or the perennial crops (asparagus). Xiphinema amen'canum is common in orchards and vineyards throughout Michigan. In September 2007, the highest value for the Plant Parasitic Index (indicating greater ecosystem stability), was found in the field succession and the lowest value in the no-till ecosystem. In December 2007, the results were similar. In December, however, the forest had the highest Plant Parasitic Index value, the field succession had the second highest and no-till had .the lowest value. In the September 2008 sample, no statistical significance difference was found (Tables 2.11-13). Freckman and Ettema (1993) had conflicting results for the Plant Parasitic Index. The no-tilI had the highest value and the field successions had the lowest. The Plant Parasitic Index seems to be a good indicator of environmental stability. In our case it gave us clearer conclusions than the Maturity Index 1-5, but F reckman and Ettema (1993) results, however, would lead to the conclusion that the Maturity Index is a better indicator than the Plant Parasitic Index. 78 In September 2007, the results were as expected. The field succession or the deciduous forest had the highest values for stability and diversity and the no-till or the till had the lowest values. The highest value of the Structural Index was associated with the field succession, which was more than twice the value of the no-till ecosystem (Table 2.11). This is an indication that the greatest ecosystem stability was associated with the field succession compared to the no- till ecosystem. There was no statistically significant difference between the treatments in December for the Structural Index Measurement. In part, this could have been caused by the change of ecosystem in December. There was very little active growth of plants, the soil had high moisture content, and there was plant matter in the process of decomposition. This may have changed the nematode community structure of the deciduous forest and the field succession to a lower Structural Index in December compared to September 2007 (Table 2.11-12). The high residue on the soil surface of the deciduous forest and the FIELD SUCCESSION field and the high moisture probably produced the abundance of bacterial feeders in the lower c-p scale values. This would result in a basal condition compared to the September 2007 sample (Ferris et al. 2001). For the Enrichment Index, there was a significant difference among the treatments for the 2007 December sampling and not for the 2007 September sampling. Additionally, all the Enrichment Index values were greater in December compared to September 2007. This probably happened because the plant biomass was in the process of decomposition in December and because of the higher moisture content compared to September 2007 (Table 2.14). The 79 nutrients released were not being taken up by plants in active growth, because most plants were dormant or dead. This increase in free resources probably produced the increase in nematodes that indicate enrichment. The ecosystem (forest) with the highest plant residue on the surface had the highest Enrichment Index. This was true for both dates, but in December there was statistically significant difference (Table 2.11-12). The cover crop probably enriched the bio- based ecosystem, and caused the Enrichment Index to be significantly higher than that of the no-till in December 2007 (Table 2.12). Results for the Nematode Channel Ratio for September 2007 reveal that the field succession and the deciduous forest was more bacterial feeder dominated than the agricultural systems. There was significant difference between the two native ecosystems compared to the no-till. The no-till was more fungal feeder dominated. In December 2007 and September 2008, the deciduous forest ecosystem was more bacterial dominated than all other ecosystems tested (Tables 2.11-13). Yeates & Bongers (1999), said that “it is clear that bacterial feeders were the dominant group” in forest ecosystems. We also found that bacterial feeders were dominant in our deciduous forest ecosystem at KBS/LTER. Neher et al. (2005) also found that forest soils were more bacterial feeder dominated compared to fungal feeders. Summary of Diversity and Maturity Indicators: It is interesting that the highest values (September 2007) of ecosystem stability and diversity were found in successional fields or deciduous forest. This was expected (Table 2.11-13). 80 The lowest values were found in the no-till or till. When using nematode-specific measurements, such as Maturity Index, Plant Parasitic Index or Structural Index, the no-till was always the most unstable, and the field succession the most stable, with the deciduous forest usually having the second highest values (Table 2.11). These results were expected, and confirm the effectiveness of these methods to measure ecosystem stability. They also appear to indicate that nematodes are as sensitive to chemical disturbance as to physical disturbance, since the no-till was always last among nematode specific measurements. Measurement such as the Maturity Index have been used effectively to distinguish changes caused in soil by heavy metals, manure, tillage, fertilizers and fumigation (Neher et al. 2005; Table 2.2). In September 2007, the field succession and sometimes the deciduous forest were consistently higher in biodiversity and Evenness, and the conventional-till or no-till ecosystems were lowest in biodiversity and evenness. This was true in December 2007, but only if the measurements were statistical significant. When statistical difference was reached (p = 0.05), the deciduous forest or the field succession had the highest values for biodiversity and nematode-specific ecosystem stability measurements. The no-till ecosystem was commonly the lowest value for ecosystem biodiversity and stability (Table 2.12). This leads to the conclusion that the most unstable least diverse ecosystems measured by Nematode Community Structure are the conventional- tillage and the no-till systems. The most stable and diverse are the deciduous forest and field succession ecosystems. 81 Neher et al. (2005) found that Maturity Index 1-5, Plant Parasitic Index, Maturity Index 2-5, and Structural Index (Table 2.2) did not reliably separate disturbed from undisturbed ecosystems and that the results varied by seasons. Separation by family, and genera, however, separated the ecosystems logically when analyzed with Canonical Correspondence Analysis. Ecosystems with different disturbance levels (i.e. undisturbed and disturbed forest) were more closely associated to each other than to different ecosystems (i.e. forest and agriculture). We also found that the different types of row crops systems (no-till, till and bio-based) were more closely associated to each other than to different ecosystem types as the forest and field succession (Figure 2.1). Neher et al. 2005 found that tillage reduced diversity. This was true for September 2007 KBS/LTER. In December 2007 and September 2008, we had mixed results. In some cases the no-till or the till had the lowest values. This could be because of the higher herbicide input in the no-till system. Trophic Group Abundance: Freckman and Ettema (1993) reported that bacterial feeders, herbivores, and fungivores dominated the ecosystems. We also found that fungivores, herbivores, and bacterievores were most abundant groups (Figure 2.5). According to Wasilewska (1998), the proportion of bacterial feeders increases when there are organic inputs (i.e. plant litter, manure). This is especially true of c-p1 colonizers. This increase was correlated to an increase in microbial activity. Wasilewska also found that in accordance to the theory of succession, extreme r-strategist (c-p 1) decreased in number with the increasing 82 stability or development of the ecosystem, and the reverse was also true, that the higher c-p values increased in more stable ecosystems compared to the more unstable ecosystems. Acid rain reduced the decomposition rate, and therefore decreased the bacterievores of lower c-p values. Papatheodorous et al. (2004) did not find the correlation between bacteria and bacterial feeders as reported by Wasilewska. Taxon Characterization: In the last row of Appendices 2-4 the statistical difference was determined with 95% confidence intervals for the means (Appendix 2-4 & 8-25). We chose this method because of the often large variability between samples in the same treatment (AOV pool the standard deviation for all the treatments). Extensive nematode population density spatial variability is common (Robertson & Freckman 1995). For example, in the conventional tillage system, contained circa 40 Aphelechus sp. per 100 cm3; whereas, none might be recovered from other sample replicates on the same date. In September 2007, there were no Aphelenchus in the mid-succession and in December the highest number of the genus Aphelenchus was found in the early succession. One of the causes could be that the successions are temporally different in their succession. One was an agriculture field with field succession beginning ~1967. The other was last tilled in 1989. The plant species composition also differed. The mid-succession has a higher amount of woody plants. Additionally, in September 2007, the soil was dry and in December it was wet. This is believed to have made a difference on which taxa 83 were detected. Nematodes are preferentially aquatic and in dry conditions many nematodes go into resting stage, die or migrate deeper were moisture is present. Following a precipitation event many taxa rapidly increase in numbers and take advantage of the available food (bacteria, fungi, other nematodes, plants, algae et al.). The r—strategist are able to more rapidly respond to this ecosystem change, whereas, in dry conditions, the K-strategists would be more successful, especially in more stable environments such as the native forest or field successions. This may at least partially explain differences among results of the three sampling dates. The soil was only dry in September 2007. In September 2008 and December 2007, it was wet. Some K-strategist nematodes with high c-p values of 5 were only present in the forest or field succession as expected. In many cases they were present only rarely in some samples in the forest or field succession, thereby increasing the variability and not resulting in statistical significant differences. Disco/aimus, Longidorus, and Belondira are examples of nematodes with high c-p values that were rare, but detected in the forest or succession ecosystems. These nematodes are good indicators of stable ecosystems. Because of their rarity, however, they do not seem like reliable indicators. The genus Xiphinema has a cp value of 5. Our data seems to confirm this, because it was more abundantly found in the more stable environments. Bastiania (b3), Bunonema (c—p value of 1), Xenocriconemella macrodora (h3) and Hemicycliophora are some nematodes with relatively low c-p value that were found only in the native forest or field successions. Neher et al. 2005 84 reported that the family Bunonematidae was only found in the undisturbed soils, confirming our observations that that Bunonema was only found in the native undisturbed soils. We believe that some c-p values might need to be revised. This recommendation is based on our ecological observations, prior to the recommendation of any changes experimentation and observation would be needed. The family Criconematidae (h3) was found mostly in forest, but Neher et al. 2005 reported higher numbers of Criconematidae in the agricultural systems compared to the forest. This difference is probably species related. Species of the Criconematidae are common in tree fruit production in Michigan. In September and December 2007 the Genus Pratylenchus was found in all KBS/LTER ecosystems studied except the deciduous forest. In 2008 this taxa was very abundant in the agriculture plots but rare in the forest (Appendix 24). Pratylenchus is a genus that is not commonly found in the deciduous forest at KBS/LTER, Michigan. Boag 2008 listed Pratylenchus as a common genus in deciduous forest in Scotland. Pratylenchus macrostylus were collected from the roots of Fraser fir and red spruce in North Carolina (Hartman and Eisenback, 1991). Additionally, Pratylenchus brachyurus was also reproduced on pine trees by Ruehle (1969) and in North Carolina Pine forest (Neher et al. 2005), so the genus Pratylenchus can be found in forest. Yeates et al. 1999 reported lower population densities of Pratylenchus in the perennial crops compared to the annual crops. The perennial or native fields also did not contain as many Pratylenchus as the annual agriculture cropping systems at KBS/LTER in 1991, as reported by Freckman and Ettema (1993). Pratylenchus penetrans is one of 85 the most common plant parasitic nematodes species in Michigan. The observed differences are probably species specific. Neher et al. 2005 found that Mylonchulus was associated with agriculture ecosystems. We also found that Mylonchulus was associated with agriculture ecosystems (Figure 2.1 & Appendix 13). Neher et al. 2005 reported that the family Tylenchidae (genus Tylenchus), Plectidae (Plectus) and Cephalobidae were found in both forest and agricultural systems. We found that these families were common in all ecosystem sampled (Figure 2.6, Figure 2.1, & Appendix 2-4). Effects of Soil Moisture on Nematode Community Structure: Temperature and moisture can affect nematode abundance and the nematode community structure of ecosystems (Bakonyi & Nagy 2001). The mean daily temperature for two weeks before sampling in September 25, 2008 was 18.79 0° and the mean daily precipitation was 1.83 cm. The soil was moist on the sampling date. For the December 12, 2007 sampling date, the mean daily temperature for two weeks prior was -2.8 0° and the mean daily precipitation was 0.58 cm. The soil was very moist. On September 25, 2007, the soil was dry; the mean daily precipitation for the two previous weeks was 0.1 cm, and it had not rained for 9 days before the sampling. The mean daily temperature for was 18.35 C° (Table 2.14). It is possible that the clear and significant results of stability, maturity and biodiversity in September 2007 were caused by the low moisture contents in the soils (Table 2.14). It is hypothesized that water acts as an agent that makes nutrients more available for the microbes and nematodes, therefore permitting 86 the r-strategist (low c-p values) to reproduce in great quantities. This is probably what happened in December 2007 and September 2008, soil moisture was abundant. Nematodes of lower c-p values, and of just a few taxa, dominated the ecosystems, reducing the evenness and increasing the variability of most of the measurements. In addition, since mostly the lower c-p values were abundant, this reduced the Maturity Index, and Structural Index values, which measure the maturity of ecosystems through nematodes c-p values. This can be supported by the literature, but the results in the literature are mixed. In a study of the effect of temperature and moisture on nematode community structure of semiarid grassland in Hungary by Bakonyi & Nagy (2001), the soil that was warm and dry had greater generic richness than the warm and wet on most dates. But in the same study, the Maturity Index was highest in the warm and wet soils compared to the cold and warm dry soils, cold and wet soil and the control. We cannot therefore makeany conclusions of why the results were so clear in the September 2007 sample. It is likely, however, than under the water stressed conditions in September 2007, the more undisturbed native plots had more K-strategist that could persist under such conditions. According to Papatheodorous et al. (2004), the family Cephalobidae is characteristically dominant in dry soils. We also noticed a similar result. Taxa of the family Cephalobidae were more proportionately abundant in the September 2007 sampling, when the soils were dry, in comparison with December 2007 and September 2008 samplings, were the soils were moist. Greater irrigation, 87 therefore moisture, increased the abundance of nematodes in a study of Taylor et al. (2004). In our contribution, we report greater nematode abundances in December 2007 and September 2008 when the soil was moist, compared to September 2007 when the soil was dry. Family Abundances and New Taxa Compared to Freckman and Ettema’s (1993): In samples taken in 1991, the family Rhabditidae, Cephalobidae, Aphelenchidae, Tylenchidae and Pratylenchidae were abundant in all systems studied at KBS/LTER (Freckman & Ettema 1993). The 2007 and 2008 samples yielded similar results. The most abundant families in most ecosystems were Rhabditidae, Tylenchidae, Cephalobidae, Pratylenchidae (in agriculture ecosystems), Aphelenchidae (not abundant in the forest), and Plectidae (Figure 2.6). Thirty-six new taxa were recovered from the 2007 and 2008 soil samples that were not reported by Freckman and Ettema (1993). These were: Amphidelus, Amphidorylaimus, Bunonema, Crossonema, Cruznema, Diplogaster, Diplogasteroididae, Ditylenchus, Dory/aimoides, Enchodelus, Gracilacus, Hemicycliophora, Labronema, Leptonchus, Longidorus, Macropostonia, Meloidogyne, Medinius, Mesomabditis, Mononchus, Nothotylenchus, Odontolaimus, Ogma decalineatum, Oligocheates (non- nematode), Oscheius, Pungentus pungens, Panagrobelus, Pn'onchulus, Rhabditella, Rotylenchus, Scutellonema, Stegelletina, Stomadorhabditis, Tardigrada (non-nematode), Tn'pyla, Tylencholaimus, Tylocephalus, and Xenocriconemella macrodora. 88 We conclude that Nematode Community Structure is a useful tool to determine ecosystem function, biodiversity and stability, and that the KBS/LTER forest and old field succession ecosystems tend to have higher biodiversity, maturity and stability than agricultural systems. Among the agricultural systems, the bio-based (organic) was more closely related to the native ecosystems than the no-till and conventional till ecosystems. Nematode community structure methods successfully separated the ecosystems. There were, however, some problems with the methodology because of frequent variability and unclear results associated with specific measurements. These methods need to be investigated further in order to be applied effectively in a universal scale. The multivariate analyses logically separated the ecosystems studied, and were useful in identifying taxa that were ecosystem specific. One further problem in using these methods universally is that they require a great deal of taxonomic knowledge and training. I found the learning curve to be relatively steep. 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E _ _ _ _ -02 0x00 9. - coo r cow .00080E0: 00 A008. 00 00:55 30:9 “00:9; : OOOH 05 0050.50 00.0 ._ =5 6000.00.00 *0 30:03.0 30. 0 00502.00 .0008 0:0:0.000 0c... €0.90 £000 Eot 00.0500. $2.0m .0.0E0x0v 0x0. 00 .00Esc 0E E00050. 200 05 0>000 00x00 02h OONH woom .w Room 5 :09222 $3.539. ”—0 meum >800 02L 5:5 0306080 m0___E0¢ 0080802 .©.N .9”— INS :0 33001 ad sapozauau 120 REFERENCES Andre, H., X. Ducarme, J. Anderson, D. Crossley Jr., H. Koehler, M. Paoletti, D. Walter and P. Lebrun. 2001. Skilled eyes are needed to go on studying the richness of the soil. Nature 409: 761. Barbercheck, M.E., D.A. Neher, O. Anas, S.M. El-Allaf and TR. Weicht. 2008. Response of soil invertebrates to disturbance across three resource regions in North Carolina. Environmental Monitoring Assessment DOI 10.1007/310661- 008-0315-5. Bell N.L., L.T. Davis, S.U. Sarathchandra, B.|.P Barratt, C.M. Ferguson and R.J. Townsend. 2005. 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Frontiers in Ecology and the Environment 6: 281. Robertson, GP. 2008. About KBS LTER. Retrieved January 6, 2009, from http://kbs/about/overview.php. Robertson, G.P., E.A. Paul, and RR. Harwood. 2000. Greenhouse gases in intensive agriculture: Contributions of individual gases to the radiative forcing of the atmosphere. Science 289: 1922-1925. Robertson, G. P., and D. W. Freckman. 1995. The spatial distribution of nematode trophic groups across a cultivated ecosystem. Ecology 76: 1425- 1432. Ruehle, J.L. 1969. Nematodes Parasitic on Forest Trees. Nematologica 15: 76- 80. 124 Quintanilla Tornel, M., G. Bird and S. Gage. 2009. Impact of Microwaves and Water on Acoustical Signatures of a Compost. Accepted, Compost Science and Utilization Journal. Samoiloff, MR. 1987. Nematodes as indicator of toxic environmental contaminants. In: Veech, J.A. & Dickson, D.W. (Eds) Vistas on Nematology, p.433-439. Society of Nematologists, Inc. E.O. Painter Printing Co, DeLeon Springs, Florida. Sampedro L., & J. Dominguez. 2008. Stable isotope natural abundances (6‘30 and (TN) of the earthworm Eisenia fetida and other soil fauna living in two different vermicomposting environments. Applied Soil Ecology 38: 91-99. Sheu, S. & M. Falca. 2000. The soil food web of two beech forests (Fagus sylvatica) of contrasting humus type: stable isotope analysis of a macro- and a mesofauna-dominated community. Oecologia 123: 285-286. Swift M. J. & J. M. Anderson. 1994. Biodiversity and ecosystem function in agricultural ecosystems. ln: Biodiversity and ecosystem function. Schulze E., H. A. Mooney Eds. Springer. 525 pp. Taylor A.R., D. Schroter, A. Pflug and V. Wolters. 2004. Response of different decomposer communities to the manipulation of moisture availability: potential effects of changing precipitation patterns. Global Change Biology 10: 1313- 1 324. ter Braak C.J.F., Smilauer, P. 2002. CANOCO Reference Manual and CanoDraw for Windows User's Guide, Software for Canonical Community Ordination (Version 4.5), Biometris, Wageningen and Ceske Budéjovice, Netherlands, 500 pp. Van Kessel, W. H. M., R. W. B. Zaalberg, and W. Seinen. 1989. Testing _ environmental pollutants on soil organisms: a simple assay to investigate the toxicity of environmental pollutants on soil organisms using CdCI2 and nematodes. Ecotoxicology Environmental Safety 18:181-190. Wasilewska, L. 1991. Long-term changes in communities of soil nematodes on fen peat meadows due to the time since their drainage. Ekologia Polska 2:59- 104. 125 Wilsey B.J. and Potvin, C. 2000. Biodiversity and ecosystem functioning: Importance of species evenness in an old field. Ecology 81: 887-892 XLSTAT©. 1995-2009. Addinsoft. www.x|stat.com Yeates G. W, and T. Bongers. 1999. Nematode Diversity in Agroecosystems. Agriculture, Ecosystems and Environment 74: 113-135. Yeates, G.W., T. Bongers, R.G.M. De Goede, D. W. Freckman, and SS. Georgieva. 1993. Feeding Habits in Soil Nematode Families and Genera - An Outline for Soil Ecologist. Journal of Nematology 25: 315-331. Yeates, G.W., D.A Wardle and RN. Watson. 1999. Responses of soil nematode populations, community structure, diversity and temporal variability to agricultural intensification over a seven year period. Soil Biology and Biochemistry 31: 1721-1733. 126 Nematode Classification and Identification References“ Bert, W.and G. Borgonie. Order Rhabditida: Suborder Tylenchina. 2006. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 648- 695. Blaxter, M.L., P. De Ley, J.R. Garey, L.X. Liu, P. Scheldeman, A. Vierstraete, J. R. Vanfleteren, L.Y. Mackey, M. Dorris, L.M. Frisse, J.T. Vida, and WK. Thomas. 1998. A molecular evolutionary framework for the phylum Nematoda. Nature, 392: 71-75. Coomans A. and Eyualem-Abebe. 2006. Order Monhysterida. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 574-603. Decraemer W. and N. Smol. Orders Chromadorida, Desmodorida and Desmocolecida. 2006. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 497-573. De Ley, P. and M. Blaxter. 2002. Systematic Position and Phylogeny. In: The Biology of Nematodes. Lee, D. ed. Taylor and Francis, New York. DeLey P., M. Mundo-Ocampo, and I. DeLey. 2001. Identification of Freeliving Nematodes (Sercernentea). Workshop booklet from University of California, Riverside, California. ' Fortuner R. and M. Luc. 1987. A reappraisal of Tylenchina (Nemata). 6. The family Belonolaimidae Whitehead, 1960. Revue de Nématologie 1O : 183-202. Freckman D.W. and CH. Ettema. 1993. Assessing Nematode Communities in Agroecosystems of Varying Human Intervention. Agriculture, Ecosystems and Environment 45: 239-261. Goodey T. and J3. Goodey. 1963. Soil and Freshwater Nematodes. Butler and Tanner Ltd, London, Great Britain pp 1-544. Goodey J.B, and DJ. Hooper. 1965. A neotype of Aphelenchus avenae Bastian, 1865 and the rejection of Metaphelenchus Steiner, 1943. Nematologica 11:55- 65. 1 References not included in the manuscript, but used as resources for nematode identification and classification. 127 Holovachov, O and P. DeLey. 2006. Order Plectida. In: Eyualem Abebe, W. Traunspurger, and l. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 611-647. Jairajpuri MS and W. Ahmad. 1992. Dorylaimida: free-living, predacious and plant-parasitic nematodes. Oxford and IBH, New Delhi. Mai W., P.G. Mullin, H.H. Lyon, and K. Loeffler. 1996. Plant-Parasitic Nematodes: A Pictorial Key to Genera. Cornell University Press, Ithaca, NY. Nguyen, Khuong B. 2006. Nematology website in the University of Florida. httpzllkbn.ifas.ufl.edu/rhabdi/rhabkev.HTM Nguyen, Khuong B. 2006. Nematology website in the University of Florida. http:l/kbn.ifas.ufl.edu/cephalob/cephakev.htm Pefia Santiago R. 2006. Dorylaimida Part I: Superfamilies Belondiroidea, Nygolaimoidea and Tylencholaimoidea. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 326-391. Powers T. and P. Mullin. Plant and Insect Parasitic Nematodes. University of Nebraska Nematology Website. httpzllnematodeunledu/ Raski, D. J. 1962. Paratylenchidae n. fam. with descriptions of five new species of Gracilacus ng and an emendation of Cacopaurus Thome, 1943, Paratylenchus Micoletzky, 1922 and Criconematidae Thorne, 1943. Proc. Helminth. Soc. Wash., 29: 189-207. Siddiqi, MR. 2000. Tylenchida. Parasites of Plants and Insects, 2nd Edition. CABI Publishing. 848 pp. Sher, SA. 1965. Revision of the Hoplolaiminae (Nematoda). V. Rotylenchus Filipjev, 1936. Nematologica 11:173-198. Sher, SA. 1963. Revision of the Hoplolaiminae (Nematoda). Ill. Scutellonema Andrassy, 1958. Nematologica 92421-443. SmoI, N.and A. Coomans. Order Enoplida. 2006. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 225-292. Stock, S.P, P. DeLey, l. DeLey, M. Mundo-Ocampo, J.G. Baldwin J.G. and SA. Nadler. 2002. Panagrobelus stammen' Riihm, 1956 and Plectonchus hunti n. sp.: implications of new morphological observations for characterisation of these genera (Nematoda: Panagrolaimoidea). Nematology 4 (3): 403-419. 128 Thorne, G. 1974. Nematodes of the Northern Great Plains. Part II. Dorylaimoidea in part (Nemata: Adenophorea). Technical Bulletin. Vinciguerra, MT. 2006. Dorylaimida Part II: Superfamily Dorylaimoidea. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 392- 467. ZuIIini A. and V. Peneva. 2006. Order Mononchida. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, p. 468-496. Zullini A. 2006. Order Triplonchida. In: Eyualem Abebe, W. Traunspurger, and I. Andrassy (eds) Freshwater Nematodes: Ecology and Taxonomy. CABI Publishing, Cambridge, MA, pp. 293-325. Websites: Images and description of KBS/LTER nematodes: http://www.nemasoi|.com/ Pictures and descriptions of soil nematodes: http://nematode.un|.edul Key to soil nematodes: httpzllnematode.unl.edu/key/nemakev.htm httpzllnematode.unl.edu/konzlist.htm. Plant Parasites: httpzllmgd.NACSE.ORG/hyperSQL/squiggles/ http://www.apsnet.oLq/education/LessonsPIantPath/LesionNema/ Key to the Order Diplogasterida: http://kbn.ifas.ufl.ed u/gaster/dipmainhtm Key to the Rhabditida-Rhabditina: httpzllkbn.ifas.qu.edu/rhabdi/rhabmain.htm Key to the Tylenchidae: http://kbn.ifas.ufi.ed u/tvlench/tvlench.htm Key to the orders: http://p[pnemweb.ucdavis.ed u/nemaplex/Taxadata/orderkey.htm 129 Diverse keys and nematode info: http://plpnemweb.ucdavisedu/nemaplex/Uppermnus/nematamnu.htm Key to the families: httpzllplpnemweb.ucdavisedu/nemaplex/‘l'axadata/Famkemtm Key in Spanish: httpzllwwwsenasa.qob.pe/intranet/capacitacion/cursos/curso arequma/clave ide ntgeneropdf 130 CHAPTER 3 TEMPORAL DYNAMICS OF ACOUSTICAL SIGNATURES ASSOCIATED WITH ALTERNATIVE MANAGEMENT AND NATURAL ECOSYSTEMS ABSTRACT Different habitats were monitored at the Kellogg Biological Station Long Term Ecological Research (KBS/LTER), Hickory Corners, Michigan in 2005, 2006 and 2007 for their acoustical properties. Microphones where placed 30 cm above ground and on the soil surface in a conventionally tilled corn-soybean rotation, an organic tilled corn-soybean rotation, early succession and mid- successional fields, a coniferous forest, and a deciduous forest. Acoustical signatures were recorded on laptop computers at sunrise, noon, sunset, and ' midnight. Recordings were made every 5 minutes in 2007, and every minute in 2005 and 2006 for 30 seconds in duration at selected times of the day for about 2 hours. At midnight, there were significant differences between the above ground sounds in the forest compared with the agricultural habitats. At midnight, the deciduous forest habitat had a high intensity sounds made by tree crickets and katydids; while the agricultural habitats were equally quieter throughout the day and night. The sound Power Spectral Density (PDS) tended to increase as the darkness increased in the deciduous forest and early and mid-successional habitats. There were no differences among the habitats for the acoustical signatures at the soil surface. We conclude that different ecosystems have different acoustical characteristics. 131 INTRODUCTION Sound can be used as one metric to measure ecosystem health. Gage et al. (2001) developed an acoustic index to measure habitat quality. This index is based on partitioning the acoustical frequency spectrum. Gage et al. (www.real.msu.edu) developed analytical processes to measure acoustic properties of ecosystems, and produced a web-based infrastructure that could capture, process and relay ecosystem measurements through internet, in near real-time (Butler et al. 2006). Krause and Gage (2003) stated that an ecosystems’ acoustical signature is a unique component of its function. Acoustical sampling methods do not require destructive sampling and can be measured relatively easily and inexpensively, compared to other procedures. Bernie Krause, originator of Wild Sanctuary, Inc. (http://www.wildsanotuarvcoml) is a soundscape pioneer and acoustical technology researcher since 1968. Krause (2001) reported that sounds of habitats are being lost. In part, he hypothesized that this is caused by habitat destruction. Masking and disturbance created by human-induced mechanical sound can impede many organisms from communicating and mating. This can result in a decrease or even possible extinction of “key vocal creatures” and accordingly the combination of shrinking habitat coupled with increased human activity has produced conditions where non-human communications necessary for survival of some organisms is in jeopardy (Krause 2001). Murray Shafer is identified as the father of acoustic ecology who coined the term soundscape in 132 the late 70’s (Krause 2001). In Tuning of the World, Schafer (1977) observed that the noise produced by humans contributes to the loss of soundscape in the wild and that loud noise is emblematic of Western models of power (Schafer 1 977). Krause (2001) noted that political, economic, and social aspects of our culture has had a significant impact on ecosystem acoustics because in undisturbed environments organisms distribute their sounds in space and time in order to avoid competition, calling this the acoustic niche hypothesis. The niche hypothesis predicts a positive correlation between species composition and soundscape structure in terms of time, frequency and amplitude. When a habitat reaches dynamic equilibrium, the spatial structure of the acoustic sonograms illustrate complex features (both frequency and temporally based), indicative of the relationship between vocal organisms (Krause and Gage 2003, Krause 2002). In other words, biodiversity tends to be positively correlated to acoustic diversity over time, and the acoustics of an environment can provide indices of ecosystem integrity and biodiversity. The acoustic niche hypothesis was examined in an analysis of recordings made in the Sequoia National Park (Krause and Gage 2003). The definition of biophony is “the combined sounds that living organisms produce in a given habitat” (Schmidt 2002). It is also believed that the biophony of an ecosystem is a metric to aid in understanding its health. Gage and Krause (2003) did not focus on recording and analyzing sounds of individual organisms but analyzed the acoustical signature of entire systems. Embedded in this are 133 indications of the system’s health, location, season, weather, time, successional stage and disturbance. The thesis tested was that each habitat’s biophony is coupled to the health of a particular habitat. According to Graber (Schmidt 2002), sounds...in Sequoia represents a valuable component of a park’s natural resources inventory, much like producing a vegetation map or a list of animal species...Should concordance among various acoustic elements in a soundscape prove to be a widespread phenomenon, it...holds promise for a window into a whole new aspect of ecosystems that was heretofore undetected. Understanding and preserving the acoustics of an ecosystem is important. For example, seventy-two percent of visitors of national parks say that among the most important reasons for their visit is to experience the peace and sounds of nature (http://www.nature.nps.qov/naturalsounds/index.cfm). More multi-year and multi- season recordings from other ecosystems are needed to gain an overall understanding of biophony. Objectives: The objectives of the research are to: 1) record the unique acoustical signatures of different habitats, 2) measure the effect of disturbance and successional levels on biodiversity through acoustical measures, and 3) determine the temporal dimensions of acoustics. The following three hypotheses were tested: 1) habitats have specific acoustical signatures, 2) acoustical signatures of habitats have temporal dimensions, and 3) agricultural systems impact ecosystem acoustics due to disturbance. 134 Site Description: The research was conducted at the Michigan State University, W. K. Kellogg Biological Station (KBS), Long Term Ecological Research (LTER) site, in southwest Michigan (85° 24’ W, 42° 24’N, 288m elevation, Fig. 3.1). The KBS/LTER was initiated in 1987 by Michigan State University, and the Michigan Agricultural Experiment Station with support from the National Science Foundation. It was founded with the objective of obtaining interdisciplinary research in agricultural ecology (KBS/LTER website). Soils at KBS/LTER are Typic Hapludalfs. They are either fine-loamy, mixed Mesic of the Kalamazoo series, or coarse-loamy, mixed Mesic of the Oshtemo series. Annual mean temperature is 9°C (min. in January -5°C, and max. in July 22°C). The mean annual precipitation is 84 cm, evenly distributed throughout the year, with half as snow. The sites used for this experiment were: 1) corn/soybean/wheat rotation with conventional management and tillage, 2) corn/soybean/wheat rotation legume cover— bio-based (organic), 3) deciduous forest, 4) coniferous forest and 5) two old field successions, one is in an early succession stage because of occasional burning and was last tilled in 1989 and the other is in a mid- succession stage (grasses, forbs, shrubs and small trees) and was last tilled circa1955 (Robertson et al. 1993, http://lter.kbs.msu.edu/siteDescription.htm, Fig. 3.1). 135 MATERIALS AND METHODS Sounds were recorded in deciduous and coniferous forest, early successional communities (yearly burning), mid-successional community and agricultural habitats during July and August 2005, 2006 and 2007. Each microphone (Aquarian A3 hydrophone) was placed 30 cm above the ground (Figs. 3.2 & 3.3). The recording equipment included a laptop computer, two hydrophones, an M-Audio sound processor, and a foam tube 30 cm in length to support the two hydrophones (Fig. 3.2). Total Recorder software, MobiIePre USB (httgzllwwwm- wio.com/prodtm_/en us/MobilePreUSB.html) was used for automatic scheduling the recordings, thus allowing simultaneous recording at all site. The battery powered laptops limited recording time to a maximum of two consecutive hours. Cool Edit 2000 (now Adobe® Soundbooth® CS4) and Spectogram were used to make sonograms and a program, developed in Matlab (2007) was used to analyze sound samples. In 2005, recording were made in four sites: 1) mature deciduous forest, 2) coniferous forest, 3) bio-based (no-input, organic) agricultural system, and 4) high input conventional-till system. From Monday, August 22 until Friday August 26, each site was monitored using two microphones. One was positioned at a 30 cm height and the other on the soil surface (O-horizon). This was repeated six times per day: 6:00 (dawn), 9:30 (midmorning), 12:00 (noon), 16:30 (mid- afternoon), 20:30 (dusk), and 00:00 (midnight). Recordings were made in all 136 sites simultaneously. There were seven acoustic samples of 30 seconds each taken at all six times. In 2006, similar methods and the same equipment were used as in 2005. The microphones were placed in the same position as in 2005 (one 30 cm above the ground and one on the soil surface). The recordings were made three times during the summer: July 18-26, August 9-14, and August 23-27, 2006. During observations in 2005, it was observed that the insect sounds intensified as the night fell in late August. To investigate the increment of sound as darkness increased, evening recordings where initiated about 30 to 45 minutes before and after sundown. The recordings were made every five minutes for 30 second duration. Sounds were sampled in the evening starting before sundown from ~8:30-10:00 pm and at dawn. Seven recordings were made at noon every one minute, for 30 second duration based on the same methods for the midnight recordings. In addition, sounds were recorded in five habitats: 1) bio-based (no-input, organic) corn/soybean/wheat rotation, 2) conventional corn/soybean/wheat rotation, 3) mid-succession, 4) deciduous forest, and 5) coniferous forest. Because sounds of audible interest were not detected in the organic corn/soybean rotation and the coniferous forest, the sound recorders were relocated to successional Pseudoacacia and grass fields that were adjacent to the gravel road within the KBS/LTER main site, where there was more acoustical activity. Even though recorders placed in the conventional corn/soybean rotation 137 did not produce significant audible sounds, the recorders were left recording to enable comparison with other habitat types. In July and August, 2007 sounds from the deciduous forest, mid and early successions, and conventionally tilled corn/soybean/wheat rotation agricultural ecosystems were recorded (Table 3.1). Recordings were made primarily at times of lighting change such as sunrise and sunset (Table 3.1). The sounds were recorded every 5 minutes for duration of 30 seconds. Replication was obtained by recording the sounds of each replicate ecosystem at the same time on a different day. Each KBS/LTER habitat is replicated three or six times. Each replicate consists of a 1.0 hectare plot. The habitats sampled were: 1) conventionally tilled (high input corn/soybean/wheat), 2) mid-succession field last tilled circa 1955 (grasses, forbs, shrubs and small trees), 3) early succession, yearly burned, with grasses and forbs, historically tilled last in 1989 and 4) mature deciduous forest. “Images in this dissertation are presented in color.” RESULTS Ecosystem Acoustical Signatures Sounds recorded in each habitat had unique acoustical signatures (Fig. 3.4a-c). In July and August 2007, sounds from the deciduous forest were significantly (p = 0.05, 95% Cl, Fig. 3.5) louder than both the field successions (early and mid—successions) and the conventionally tilled systems. In addition, the sounds recorded in the field successions had significantly (p = 0.05) greater 138 Sound Power Spectral Density (PSD) than sounds emanating from the conventional tillage (Fig. 3.5). In 2005, the deciduous forest had sounds with greater PSD than sounds recorded the coniferous forest, and the agricultural ecosystems (Fig. 3.6). Temporal Dynamics of Ecosystem Acoustics Time of day and date impacted the PSD of ecosystems at the KBS/LTER. The change was more notable in the native ecosystems (forest and old field successions) than in the agricultural system. In the deciduous forest sounds were louder as the evening progressed due to insect sound (Fig. 3.7). This was not observed in July. The PSD of sounds recorded in the morning (~6:00-7:00 am) and noon in both July and August 2007 were near 0 (Fig. 3.8). In 2006, the sounds in the deciduous forest in August had significantly greater PSD in the evening and midnight (p = 0.05, 95% Cl) compared to sounds recorded in morning and noon (Fig. 3.9). In August 2007, the evening sounds were significantly greater in the evening and night than in the morning and noon. In the July sampling date, time of day did not affect sound PSD. On August 22-26, 2005 the deciduous forest at midnight had significantly (p < 0.001, AOV) more sound than all other ecosystems recorded (coniferous forest, conventional tillage and bio-based (organic)). In the deciduous forest, the sounds were louder (p < 0.001, AOV) at midnight than at 6:00, 9:00, 00:00 (noon), and 20:30 (Fig. 3.6). In the mid-succession ecosystem in 2007, the sounds produced on July 23, 2007, were significantly different from those of August 22, 2007 (p = 0.001). 139 On both dates, time effectively (p< 0.001) predicted the insect sound intensity. The later in the evening, the louder the sounds (Regression Analysis, analysis of variance p < 0.001, R2 = 53.7%; Fig. 3.10). Insect sounds in August 22, 2007 increased as a cubic regression form (R2 = 97.7%). As the evening progressed, the sound increased, but it a wave fashion. After dusk, the sound increased in an exponential fashion (Fig. 3.11). In the evening, 2007, the sounds in the early and mid-successions were generally not as loud as the sounds emanating from the deciduous forest (Figs. 3.12 & 3.5). Insect sounds were louder in the early and mid-successions in August 27 2007 (Fig. 3.12) compared to earlier August and July recordings. On August 29, 2007, however, the sounds in the early succession were as loud as in the deciduous forest recordings. The sounds recorded in the conventional tillage habitat had a low PSD on all recording dates and times compared to the forest and the field successions (p = 0.05, 95% Cl, Fig. 3.5). Since this experiment was conducted in a living field laboratory consisting of different systems, sounds from the nearby field successions or forests were recorded as background noise. These sounds were heard at a distance, had significantly lower PSD values than that associated with the deciduous forest and field succession in August in the evening. This was observed in 2005, 2006 and 2007 (Fig. 3.5, 3.6 & 3.12). Evening Sound PSD Distribution in the Different kHz Levels: The PSD value (watts/kHz) for level 3 (2-3 kHz) was dominant in the deciduous forest in August 2007. It was significantly (p = 0.05, 95% Cl) higher than all other kHz levels 140 (Fig. 3.13). This was not the case in July. The PSD value for level 1 (largely background sound) was similar in July and August 2007. There was significantly more sound energy (PSD) in level 4 in August 2007 at night, compared to July at the same time of day (Fig. 3.13). There were no significant differences between July and August 2007 for any of the PSD frequency levels (1-11) associated with the mid-succession. The 0-1 frequency kHz (level 1) had the greatest PSD (Fig. 3.14). In the early succession, August 2007 evening recordings (~8:00- 10:00pm), the acoustic frequency (3-4 kHz) had the greatest PSD and was significantly (p = 0.05, 95% CI) higher than lower frequencies (levels 2, 3) or higher frequencies (5—11). The PSD values in Frequency levels 1 and 3 were also higher than the frequency levels 5-11 (Fig. 3.15). The sound pattern and PSD distribution can be visualized with a sonogram. August nights in the deciduous forest in produced a sonogram with reds and maroons Fig. 3.16). The highest sound intensity is between frequencies of 2.5 kHz and 3.5 kHz, but the sound intensity of the insect calls can be visualized in every kHz (Fig. 3.16). In the morning, the insect calls in the deciduous forest were less intense, but bird calls were apparent in the spectrum. Bird calls can be recognized by their diverse patterns in the sonogram (Fig. 3.17) compared with insect calls which have lower diversity. The field succession in August also tended to increase in sound PSD in the night. At night sonograms tend to have a strong sound signal between the 3 and 4 kHz frequencies (Fig. 141 3.18). All the sounds and their respective sonograms for recordings in 2005, 2006 and 2007 can be heard and seen in www.nemasoil.com. DISCUSSION Time of day, date, and ecosystem type had an effect on the acoustical signatures observed in our research. This agrees the Gages and Krause (2003) hypothesis that acoustical signatures are different by location, season, time, successional stage, disturbance and weather of ecosystems. Ecosystem Specific Acoustical Signatures At night in August, forest sounds had significantly more PSD in kHz 3-4 levels compared to July. Many of the sound making insects, such as katydids, sing in the 3 or 4 kHz level (Walker and Moore, http://entnemdept.ufl.edu/walker/buzz/). Audibly, our research indicated that there was an insect choir in August evenings that was low or absent in July. Because kHz levels 3 and 4 were very low in the mid-succession fields, we suppose that there was not a great presence of singing insects on the evening recording dates as the deciduous forest. At 20:00-22:00 in the early field succession in August, the kHz level 4 had greater sound PSD than all other kHz levels. This is different from the forest on the same times and dates. In the deciduous forest, kHz level 3 dominated and in the early field succession kHz level 4 dominated the sound spectrum. This is probably because different insects are singing in the forest than in the field successions. 142 Temporal Dynamics of Acoustical Signatures: Recordings were made at times of light intensity change, including sundown and sunrise, to determine if insects increase their calls as darkness increases in the evening and night, while birds increase their calls in the morning. This observation was supported by our results. The insect sounds increased as darkness increased at night in the deciduous forest and field successions in 2005, 2006 and 2007. Multiple acoustical insect taxa stridulate at night and not in the day (lorgu and Musta 2008). Taxa can be differentiated by their acoustical signature and the temporal dynamics of their calls (Walker 1962 and Oliveira et al. 2001) Ecosystem Management Impact: On all dates and recording times, the agricultural systems had a low sound PSD. During night in August, when the deciduous forest and the field successions had multiple intense insect sounds, the acoustics associated agricultural ecosystems were low or absent. KBS/LTER agricultural systems do not seem to be a habitat propitious for acoustical insects. The ability of birds to communicate using complex acoustics was evident in their calls. They have very distinct calls that resemble language. Insect calls, however, seem more mechanical. Many insect and birds can be identified to genus or species by their acoustical signatures. There is also an apparent difference between night and day. In KBS/LTER the forest and the field succession increase in sound as darkness increases. At the same time the bird calls are not commonly heard at night. It is probable that katydids, tree crickets, crickets and other acoustic insect have a selective advantage by signing at night when birds are less likely to prey on them, because of low visibility. Day calls 143 would disclose the well-camouflaged insects’ location and birds could easily find them. This is a possible explanation for the increase of insect calls at night compared to the day. One way to test this hypothesis would be to record insect sounds in Guam where there are not many native birds left because of a non- native snake invasion. It is hypothesized that insects in Guam have increased their day calls because of no bird predation. This however was not tested by us. In conclusion ecosystems have specific acoustical signatures that change with time of year and time of day. Agriculture has a significant impact on the biophony of ecosystems. Acoustical signatures can be used to distinguish different ecosystems. 144 Acknowledgments: "Support for this research was also provided by the NSF Long-Term Ecological Research Program at the Kellogg Biological Station and by the Michigan Agricultural Experiment Station." My appreciation for the help and support of Dr. Bird, Dr. Gage, Dr. DiFonzo, Dr. Robertson, Dr. Smucker, Dr. Delfosse, Dr. Ayers, Dr. Miller, Goran Jotanovic, and Claudio Quintanilla Hausdorf. 145 TABLES Table 3.1. Sound recording sampling times, dates and sunset, dusk, dawn and sunrise times at Kellogg Biological Station/Long Term Ecological Research Michigan in July, August and September 2007. Sampling Sampling Ecosystems and Time of Civil Civil Time of Dates Times Replications recorded Sunset: Twilight Twilight Sunrise 2007 July 23 20:40-22:20 Deciduous forest rep. 1, 21:10 21:43 5:51 6:23 mid-succession rep. 1, and Conv. Till rep. 1* July 24 20240-22220 Deciduous forest rep. 2, 21:09 21:42 5:52 6:24 mid-succession rep. 2, and Conv. Till rep. 2 July 25 20:40-22z20 Deciduous forest rep. 3, 21:08 21:41 5:53 6:25 mid-succession rep. 3, and Conv. Till rep. 3 August 22 20:00-22:00 Deciduous forest rep. 1, 21:02 21:38 6:24 6:54 mid-succession rep. 1, and Conv. Till rep. 1 August 27 20:00-22:00 Deciduous forest rep. 2, 20:25 20:54 6:30 6:59 early succession rep. 2, and Conv. Till rep. 2 August 29 20:00-22100 Deciduous forest rep. 3, 20:21 21:51 6:32 7:02 early succession rep. 3, and Conv. Till rep. 3 . August 30 6:00-8:00 Deciduous forest rep. 1, 20:20 20:49 6:34 7:03 early succession rep. 1, and Conv. Till rep. 1 August 31 12:00-1:00 Deciduous forest rep. 2, 20:18 20:47 6:35 7:04 early succession rep. 1, and Conv. Till rep. 3 Sept. 2 12:00-1:00 Deciduous forest rep. 3, 20:15 21:18 6:37 7:06 early succession rep. 4, and Conv. Till rep. 2 Sept. 3 6:00-8:00 Deciduous forest rep. 2, 20:13 20:42 6:38 7:07 early succession rep. 4, and Conv. Till rep. 2 1' KBS/LTER treatment names: DF1, SF1, & T1 twww.sunrisesunset.com, retrieved March 27, 2009 146 FIGURES Kellogg Biological Station LTER Sites x~w l ’2 -- ‘ '51.: . ‘ 4 “q.-.“ 4* . '_.-l‘~ 31, ' 1 ' km Scaleup Fields [:1 Other LTER Studies 0 0 5 1 Unmanaged Sites E Experimental Plots Map prepared by KBS LTER GIS Lab. Dec. 2006 Fig. 3.1. Aerial image of the Kellogg Biological Station/Long Term Ecological Research site at Hickory Corners Michigan (http: //www Iter kbs msu g ' TERsites jpg). Treatments (T) used: T1= conventional tilled crop rotation T4= bio- based (no-input, organic) crop rotation, T7= early succession last tilled in 1989 and occasionally burned, SF= mid- succession last tilled circa 1955, DF= mature deciduous forest, CF = mature coniferous forest. 147 9" x . .‘ ‘3 5 . u equipment used for acoustical recordings. The Fig 3.2. Photographic image of recording hydrophone is inserted in the purple foam. Fig. 3.3. Acoustical recording equipment in the Deciduous Forest. Kellogg Biological Station, Long Term Ecological Research, Hickory Corners, Michigan. 148 Figs. 3.4a-c. Acoustic characterization sonograms of deciduous forest, early succession, and conventionally tilled corn/soybean/wheat crop rotation at 21 :20, August 29, 2007. The sounds were recorded at Kellogg Biological Station, Michigan. The x axis represents 0-30 seconds in time and the y axis represents frequencies of 0-11 kHz. Color intensity indicates sound intensity. Cool blues and greens indicate lowest intensity, yellow medium and the highest sound intensity is orange, and red. 5! F requencyfl-l 1 kHz 5 10 15 70 75 Time 0-30 seconds Frequency 0-11 kHz 15 20 25 Tlmo (50600“) Time 0-30 seconds 9,111 kHz ..- .3: l‘u’ Frequen 149 18000 ‘ 16000 - 14000 - EB 12000 4 Total PSD (watts/ kHz) 0.. a Deciduous Forest Early Suchession ConventionalTill KBS] L'l'El Sites Fig. 3.5. Total power spectral density (sum power spectral density (PSD) of the frequency levels 2-11 kHz) for recordings of July and August 2007 during sunrise, noon, sundown, and midnight at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Corners, Michigan. Error represents 95% confidence interval from the mean. 150 60.. 50- :? 40‘ H A g 30‘ fi 20- 10-l o- geéee 6‘9 $99 eeeeee eeeeee IllIII‘I‘rI I II I I 9999 9999 9 9'9 Q.9 Q6 ”890999.95 9°699‘9g? “;,9°f§3>° 9°Qb°9°tmr§x 69 .9 9%“? 29‘ «9 Z «0"? «0‘ .66? ‘ 9- 9' e c Fig. 3.6. Total sound power spectral density (PSD) of frequencies 1-11 kHz for August 22-26, 2005 sound recordings at the Kellogg Biological Station, Long Term Ecological Research station at Hickory Comers, Michigan. The ecosystems recorded were: deciduous forest, coniferous forest, bio-based (no-input, organic) crop rotation, and conventionally tilled crop rotation. Errors represent 95 % confidence intervals from the mean. 151 75000 PSD kI-lz 2-11 mo 25000 0 Fig. 3.7. Deciduous forest total sound power spectral density (sum power spectral density (PSD watt/kHz) plot of the frequency levels 2-11 kHz) for recordings of July and August 2007 from 20:00-22:20 at the Kellogg Biological Station/Long Term Ecological Research Station, Hickory Comets, Michigan. Each dot represents the sound PSD of one sample. 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Errors represent 95 % confidence intervals fi'om the mean. 158 25000- 20000— ‘- \ *3 1soood a 5 l. i 1°°°°l 2 _ 5 5000. 0.. -_ I I I I -o- I -o- *- July August Jle August July August July August fly August kHz-1 kHz-2 kHz-3 kHz-4 kHz-5 Fig. 3.14. 2007 sound power spectral density (PSD) of kHz frequencies 1-5 recorded in mid-successional field last tilled circa 1955 in Kellogg Biological Station, Hickory Corners, Michigan. The recordings were done between ~20:OO and 22:20 in July and August 2007. Sound power spectral density in the frequency levels 6-11 kHz was not different from 0, so they are not included in the graph. Errors represent 95 % confidence intervals from the mean. 159 25000 - 20000a 15000 a 4» 10000-1 PSD (watts! kHz) 5000- I " ll 0-1 v o -o- -o o v 3 kl-E-i kH'z-Z HEB kI-llz-4 kHE-s kl-é-s kl-l‘z-7 kH'z-s kHE-s ld-lztlo ”E11 Fig. 3.15. 2007 sound power spectral density (PSD) of frequency levels 1-11 kHz recorded in early successions field occasionally burned and last tilled in 1989 at the Kellogg Biological Station, Hickory Comers, Michigan. The recordings were done between ~20:00 and 22:00 in August 2007. Errors represent 95 % confidence intervals from the mean. 160 Amucooomvoc=h mm on m. o. m oooF OOON coon COO? 0000 0000 (2.4) Aouanbaij ooom ..oooor ooorr 5mm so... .o 6:38 3:25 bo> u 5995.99 .958 o: no 26. n 5993.8 3.9.2:. 958 .935 2.69: 3.29:. 5.00 .EQ mfior .38 .NN $392. c. $58 $90.. 303208 ho 2559.8 .0; .9”. 161 39.00va 0E... (H) Aouenbaid .Eloo.__.o|m.mE... loll: .33; c. :03 on :8 mEmancom 20.2 .mucaom be 5.25%.. ago 2.33 cozmo_::EEoo xanoo mm zoom 20 .mucaom BB 9:. mé N... c. 05. as... o5 2m 2258 88:. of. So noun am noon .8 “mama/x 5 $58 628 303.0% .0 Emacsom N; .9”. 162 AmUcOQowvoczh 2. lru. oooe ooom oooo (2H) Aouanbaig coon oooo ooom oooow coo: .mmnom 3 Boom .om ~m=w=< 25v 203 $5982 BF dwa E 3:: ES mam—:3 35638 HEB coimooosm 353 5 50¢ €8.58 05 mo msaumocom .w _ .m .mE 163 REFERENCES Butler, R., M. Servilla, S. Gage, J. Basney, V. Welch, 8. Baker, T. Fleury, P. Duda, D. Gehrig, M. Bletzinger, J. Tao, D. M. Freemon. 2006. Cyberlnfrastrastructure for the Analysis of Ecological Acoustic Sensor Data: A Use Case Study in Grid Deployment. httpzqurid.ncsa.uiuc.edu/papers/CLADE2006 LTERgrid CCJ V3-FlNAL.pdf Cool Edit 2000. Now Adobe Audition. httpzllwww.adobe.com/special/products/audition/syntrillium.html Gage, S. H., B. M. Napoletano, and M. C. Cooper. 2001. Assessment of ecosystem biodiversity by acoustic diversity indices. The Journal of the Acoustical Society of America 109: 2430 Gage, S. H. 2009 (retrieved). Remote Environmental Assessment Laboratory. http://real.msu.edu/ Iorgu, l. T. and G. Musta. 2008. Bioacoustics studies on some cricket species (Insecta: Orthoptera: Gryllidae) from Romania. Analele Stiintifice ale Universitatii Al. I. Cuza” lasi, s. Biologie animala, Tom LIV Kellogg Biological Station Long Term Ecological Station Website http://Iter.kbs.msu.edu/ Krause, B. 1998. Into a Wild Sanctuary. Heyday Books. Krause, B. 2001. Loss of Natural Soundscape: Global Implications of Its Effect on Humans and Other Creatures. San Francisco World Affairs Council, January 31, 2001. Krause, B. and S. Gage. 2003. Testing Biophony as an Indicator of Habitat Fitness and Dynamics. SEKI Natural Soundscape Vital Signs Pilot Program Report, February 3. Krause, B. 2002. Wild Soundscapes: Discovering the Voice of the Natural World. Berkeley, California: Wilderness Press. MatLab. 2007. MatLab ver. 2007b. The MathWorks, Inc. (www.mathworks.com). Natick, Mass. Oliveira, P. A. P., P. C. Simoes & J. A. Quartau. 2001. Calling songs of certain orthopteran species (Insecta, Orthoptera) in sourthern Portugal. Animal Biodiversity and Conservation 24: 65-79 164 Robertson, G. P., J.R. Crum, and B.G. Ellis. 1993. The spatial variability of soil resources following long-term disturbance. Oecologia 96:451-456. Schafer, R. M. 1977. Tuning of the World, or Soundscape. Destiny Books. Schmidt, B. 2002. Sound Signatures May Provide Clues to the Health of Park Ecosystems. Natural Resource Preservation Program, annual review. Total Recorder M-Audio MobilePre USB. 2005. Avid Technologies Inc. httpzllwww.m-audio.com/products/en us/MobilePreUSB.html Walker, T. J. 1962. The taxonomy and calling songs of United States tree crickets (Orthoptera: Gryllidae: Oecanthinae). l. The Genus Neoxabea and the niveus and van'comis groups of the genus Oecanthus. Annals of the Entomological Society of America 55: 303-322 Walker J. W. and TE. Moore. 2009 (retrieved). Singing Insects of North America. httpzllentnemdept.ufl.edu/walker/buzzl 165 CHAPTER 4 IMPACT OF MICROWAVES AND WATER ON ACOUSTICAL SIGNATURES OF A COMPOST ABSTRACT Acoustical technologies have been used to evaluate characteristics of ecosystems, including soil, demographics and organism behavior. In our research, the acoustics of four states of yard and kitchen refuse compost were analyzed. These included: compost with and without water, and microwaved compost with and without water. The acoustics generated by the microwaved and non-microwaved composts were recorded in a sound chamber. Water was then added to the control and microwaved samples. Subsequently, the acoustics were recorded again. Sonograms were produced for each of the four treatments and the data analyzed in relation to sound Power Spectral Density (PSD). With the addition of water, the non-microwaved compost became acoustically active. The PSD was more than five times greater (p < 0.0001, ANOVA repeated measures) than the microwaved compost with and without water and the non- microwaved compost without water. Most of the PSD for all four treatments was in the lower kHz frequency levels (1-4). KHz frequency level one contained the majority of the sound. Compost plus water, had 46 times more PSD at kHz level 1 than the sum of kHz levels 2-11. Most of the remaining PSD was found in the lower kHz frequencies. It is concluded that: 1) compost can be considered as a place where organisms are often dormant, 2) compost can be activated with water used as a pulsing agent and 3) acoustical technologies can be a useful, non-destructive tool for assessment of the current state of composts systems. 166 INTRODUCTION Acoustics have been used to measure soil characteristics such as aggregate stability and degree of slaking (Quintanilla et al. submitted for publication), Studies on the acoustics of biological activity associated with compost and soil, however, are limited. Brandhorst-Hubbard et al. (2001) used acoustical methods to map soil invertebrates. They compared their results with traditional estimates (actual counts) and found positive correlations. June beetle grub population densities overlapped significantly with their estimates of sound pulse rate and had a R2 of 0.47 when compared with traditional methods. When other invertebrates where added to the estimate, the R2 value increased (R2 = 0.59). They concluded that acoustic technology could be used to detect insect pests in soil, but that further study and improvement of interpretation are needed. Mankin et al. 2000 pointed out the need for economic and user-friendly, non-destructive devices to detect and quantify insect populations in environments hidden from view, like soils. Some organisms can be detected by their sounds or vibrations used in communication, feeding, or moving. Insects can be detected in soil (Mankin et al. 2007) or in trees (Mankin et al. 2008) by the use of accelerometers and other acoustic sensors. The sounds of different soil invertebrates could be distinguished. Their conclusion was that acoustic detection systems have potential as a non—destructive organism mapping tools. Sampling is easier than digging and flushing techniques, which are labor intensive and destructive (Mankin et al. 2000). 167 Geophones have been used to detect subterranean termites and ants (Mankin and Benshemesh, 2006), as well as sounds of wing-fanning vibrations of male fruit flies used to increase the trapping of females (Mankin et al. 2004, Mizrach et al. 2005). Acoustical systems have been used to detect insects in plant stems (Mankin et al. 2004), and the activity and presence of white grubs have been determined with acoustical methods (Zhang et al. 2003, 2000). Mankin (2006) also found that a low-energy microwave radar exposure increased the ability to detect Plodia interpunctella larvae with acoustical technology. Lavelle et al. (1995) focused on the fact that many soil-borne organisms spend much of their life in dormancy and Jost et al. (2004) used water as a pulsing agent to activate compost in relation to organism motility. In addition, Butler et al. (2001) and Gage (sonic.cevl.msu.edul) have demonstrated that acoustical technologies have potential for analysis of biodiversity, ecosystem integrity and biological activity. Acoustical methods have the benefit of being portable, non-destructive, relatively economic compared to other labor-intensive methods, and can be automated with the signals processed via web-based systems Objectives: The objective of this research was to determine the impact of microwaves and water on the acoustics of compost. Hypotheses: 1. Non-microwaved compost has a greater PSD than . microwaved compost. 2. Water used as an activating agent results in an increase in the intensity of the acoustical signature (PSD) of compost. 168 MATERIALS AND METHODS The acoustics of four states of a compost were analyzed. Compost (200 cm3), made from leaves and kitchen refuse, and with its natural biota (earthworms, Isopods, Collembola, Staphilinid beetles, nematodes and other microscopic organisms) was placed in two 400 ml glass containers. One was microwaved in a “Sharp Carousel R-326FS” model microwave for two minutes, with an output power of 1100W, and the frequency 2450 MHz. A hydrophone (Aquarian A03) was place on a 35° angle on the compost surface in both containers and the sounds recorded for 30 seconds in a sound-insulated chamber. The process was repeated five times. Subsequently, 50 ml of water was added to both the original and microwaved compost. The resulting acoustics were recorded as described above. The compost was moist (~40% moisture) and at room temperature (~21 C°). The activities of the macro-invertebrates were also visually observed. The Aquarian hydrophone (AQ3) on the surface of the compost was connected to a digital recorder (personal computer) and an M-audio Mobile Preamp sound processor (www.m-audio.com). Cool Edit (now Adobe Audio Audition) was used to record the sounds associated with the compost, at 16 bits, monaural at 22.050 kHz in wav file format for 30 seconds. The 30 second sound segments were processed using Matlab (MathWorks). The Welch (1967) method was used to quantify the acoustical power (Power Spectral Density) in watts for each recording. The Matlab processing code for computing the average Power Spectral Density (PSD; Welch 1967) for each 1 kHz frequency band in the sound 169 file, plus the average (i12) Power Spectral Density of all frequencies is described in Table 4.1. The program produced several graphical representations of the sound profile from each 30 second sound sample, including a: 1) sonogram, 2) ocillogram, 3) trace of the Power Spectral Density (PSD) in watts/Hz, 4) a bar chart of the PSD at one kHz frequency intervals (watts/kHz) and 5) a table of the PSD values in watts/kHz for each one kHz frequency interval from 0-11 kHz. The MatLab function “pwelch” implements Welch's method of determining the power density in watts (Welch 1967) and is a way to estimate PSD using periodograms (finite segments of the original signal that are converted into a spectral representation using the Fourier transform). This computation was automated so that multiple sound samples could be processed. The PSD values for each 1.0 kHz increment were used to compare sounds produced by each of the soil aggregates tested. For statistical and interpretation purposes, sounds where compartmentalized into 1.0 kHz frequency intervals from 0-11 kHz. The average power spectral density values for each 1 kHz frequency band were analyzed to determine the power in each 1 kHz frequency band produced by each treatment/replicate. In addition to producing the average power for each 1 kHz frequency band in each sound segment, a sonogram was produced for each sound segment to enable visual evaluation of the frequency distribution of sounds from different compost treatments. A repeated measures test ANOVA was used. Minitab statistical software program and Excel were used for the data graphics and statistical analysis. 170 RESULTS The sound produced by the non-microwaved compost plus water was greater than that associated with the non-microwaved compost without water or the microwaved compost with or without water (Fig 4.1). The sound and sonograms from each treatment and replication can be heard and seen at www.nemasoil.com, on the compost acoustics link. The PSD (sum of kHz frequencies 1-11) of non-microwaved compost with water added as an activating agent was significantly greater (p< 0.001, repeated measures ANOVA) than the PSD associated with non-microwaved compost without water or microwaved compost with or without water (Fig. 4.2). The mean PSD was more than five times greater in the non-microwaved compost plus water, compared to the other three treatments (Fig. 4.2). Most of the PSD for all four treatments was found in kHz frequency level 1 (Fig. 4.3). Non-microwaved compost plus water had 46 times more PSD at kHz level 1 (mean = 24, Fig. 4.3) than the sum of kHz levels 2-11 (mean = 0.52; Fig. 4.4). Most of the remaining PSD was found in kl-Iz levels 2-4 (Fig. 4.4). DISCUSSION There was considerable difference between the non-microwaved (living) compost plus water and all other treatments. The greater PSD found in the non- microwaved compost activated with water was most probably caused by the increase in movement and activity of the macro invertebrates found naturally in the compost. This was observed visually and heard acoustically. lsopodans, 171 annelids, collembolans and staphilinid beetles were observed to drastically increase their movement after the addition of water. It is interesting to note, that although the organisms were alive before the addition of water, this did not significantly increase the PSD compared to the microwaved compost were the macro invertebrates were dead. This reminded us of the “sleeping beauty paradox” described by Lavelle et al., 1995. I think that the principles of the “Sleeping beauty paradox”, apply also to macro-organisms, such as macro-invertebrates, and that they also were animated with an activation event, such as the addition of water. It is understood that in their description they were mainly pointing to microorganisms in a dormant state waiting to “wake up” when the conditions were favorable (moisture, nutrients, porosity, temperature...) It is likely that this principle also applies to larger organisms, maybe not to such a drastic extent, but they also have periods of rest and of greater activity. It is believed the adding of water in our test, acted as an activation event, and that increased the PSD. Mankin, 2006, found that a low-energy microwave radar exposure increased the ability to detect Plodia interpunctella larvae acoustically. The idea is similar to the pulsing agent; the organisms tend to be in an inactive stage sometimes, and to detect them, something like water, heat, or the low microwave exposure can cause them to be more active and be more effectively detected using acoustical methods. 172 In our case, the microwave exposure was high enough to kill all the macro-invertebrates observed to be in the compost. Water addition is considered an activating agent and microwaving a sterilizing agent. In the kHz levels 1-5, the treatment with the living organisms with water added, had the greater PSD (Figs. 4.3 and 4.4). Through visual observation and the acoustics recorded, it is concluded that most of the sound produced by the organisms activated by water was due to movement. During the time of water activation, pill bugs were observed running in the container and a staphilinid beetle was following and biting one of them on the appendages. An increase In movement was also observed in the earthworms and collembolans after the addition of water. The reason that most of the PSD was found in the lower kHz levels, and kHz level one was 48 times greater in PSD than all the other kHz levels summed together (compost with water), was likely because most of the sounds made by these invertebrates were caused by movement. Movements can be considered mechanical sounds, and mechanical sounds tend to be in the lower kHz levels (Gage, 2007). The addition of water to the microwaved compost did not increase the sound. It is concluded that: 1) compost can be considered as a place where organisms are often dormant, 2) compost can be activated with water used as a pulsing agent and 3) acoustical technologies can be a useful and non-destructive tool for assessment of the current state of composts or soil systems. 173 TABLES Table 4.1. Matlab code to compute average Power Spectral Density (PSD, watts/kHz) for 1 kHz frequency bins (plus total) from a .wav file segment. The last calculation (Tab (i,12)) is the sum for all 11 kHz levels. 96******************************************************************************** % Calculate the average Power Spectral Density (PSD) of the frequency bands using Welch method. 96******************************************************************************** [y,Fs] = wavread(FileSet); % Set wavefile to variable for plot [signal,Fs] = wavread(FileSet); % Access the wav file segment Pxx = pwelch(signal,[],[],512.22050); % Calculate pwelch Hpsd = dspdata.psd(Pxx,'Fs',22050,'spectrumType',‘onesided'); 96********************************************************************************** % Create the matrix of average power based on parameters set for PSD for each 1 kHz frequency band (plus total) in a .wav file segment. Multiply % values by a constant (1,000,000) to scale values. 96**t**************fi**************************************************************** Tab(i,1) = avgpower(Hpsd,[OOOO 1000])“1000000; % average PSD 0000-1000 Hz Tab(i,2) = avgpower(Hpsd,[1000 2000])*1000000; % average PSD 1000-2000 Hz Tab(i,3) = avgpower(Hpsd,[2000 3000])*1000000; % average PSD 2000-3000 Hz Tab(i,4) = avgpower(Hpsd,[3000 4000])*1000000; % average PSD 3000-4000 Hz Tab(i,5) = avgpower(Hpsd,[4000 5000])*1000000; % average PSD 4000—5000 Hz Tab(i,6) = avgpower(Hpsd,[5000 6000])“1000000; % average PSD 5000-6000 Hz Tab(i,7) = avgpower(Hpsd,[6000 7000])*1000000; % average PSD 6000-7000 Hz Tab(l,8) = avgpower(Hpsd,[7000 8000])“1000000; % average PSD 7000-8000 Hz Tab(i,9) = avgpower(Hpsd,[8000 9000])*1000000; % average PSD 8000-9000 Hz Tab(i,10) = avgpower(Hpsd,[9000 10000])*1000000; % average PSD 9000-10000 Hz Tab(i,11) = avgpower(Hpsd,[10000 11000])*1000000; % average PSD 10000-11000 Hz Tab(i,12) = avgpower(Hpsd)* 1000000; % avgge PSD 0-11000 Hz 174 kHz 1-2 kHz l-2 kHz 1—2 FIGURES I I. § . 3 , Compost “Ii h'water ' .i'l‘ If I‘ . - j " n Compost without water h: u.h“’l u‘u-UO—u-I-p-Ccu-hO—QIH-bt &- Wit-Ch uh .u‘h nfi—n-_—-“hn “o-afiu-om Microwaved compost with water 11...“. —-" 4A-“-h + -—n --.5— -- —— .-—-—-—-- Microwaved compost without water boohfio-u‘uh - g A _: h&h*“ohuh———n&n ‘00--*--0-I Time (0-30 seconds) Fig. 4.1. Sonograms of sounds of non-microwaved and microwaved compost with and without water as an activating agent. The x axis is 30 seconds time and the y axis represents kHz levels 1-2. The color intensity and brightness indicates loudness. Sounds can be heard at www.nemasoil.com on the compost acoustics page. 175 w O 1 N U1 1 I—‘ N 1.11 O l l t-‘- O 1 PSD (kHz 1-11, watts/kHz) 9‘60 «We «9° Fig. 4.2. Power Spectral Densities (PSD, sum of kHz frequency levels 1-11) of microwaved and non-microwaved compost, without and with water (p< 0.0005), with 95% confidence interval bars for the means. 176 H U1 .4 PSD (watts/ kHz) N o liléliil --_.. ---- ---- --._- I I l r Y {935650er £1090?” {9105505 &icsgsos «9” say (3 .\> ,0 ,0 >9 >9 8“ ‘3‘” ‘3‘” 8“ «9“ Fig. 4.3. Comparison of Power Spectral Densities (PSD, kHz levels 1-5) of microwaved (MC) and non-microwaved (C) compost with (+w) or without water (— w) added as an activating agent. The four treatments where: microwaved compost with no water added (MC-w), microwaved compost with water added (MC+w), compost with no water added (C-w), and compost with water added (C+w). Each treatment had five repetitions; the bars represent the mean for the five repetitions. The error bars represent 95% confidence intervals for the means. Each kHz frequency level represented is shown separate, i.e. kHz level 1 is named khz-L1 on the graph. 177 .x r.<'I—'T""I‘1. ‘- . ,.3’~ 1.2“:le 1.... " Liz?r:52—..“$‘ 0.35 0.30j 1? I 0.25- .I \ g 0.204 III 5 0.15“ x n (h “- 0.10- 0.05- l (1% ”gal r 9.312%: Li 1:134; 3:93.12 5-71.21... EEEE .EEE :EEE EEEE EEE EEEE E E EEEE E EE EEEE- U U U U 22°02: MUSEUUE’E’W Ezuzfiz’wg‘z’uugitpuzg’" N m r L? “P 'T °° a O : sssssstsgg Fig. 4.4. Comparison of mean relative Power Spectral Density (PSD, watts/kHz) for four treatments in the kHz frequency levels 2-11. 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November 3-6, 1998 (Digitized sounds). Mankin, R. W., J. B. Anderson, A. Mizrach, N. D. Epsky, D. Shuman, R. R. Heath, M. Mazor, A. Hetzroni, J. Grinshpun, P. W. Taylor, and S. L. Garrett. 2004. Broadcasts of wing-fanning vibrations recorded from calling male Ceratitis capitata (Wiedemann) (Diptera: Tephritidae) increase captures of females in traps. Journal of Economic Entomology 97:1299—1309. Mankin, R. W., D. K. Weaver, M. Grieshop, B. Larson, and W. L. Morrill. 2004. Acoustic System for Insect Detection in Plant Stems: Comparisons of Cephus cinctus in Wheat and Metamasius callizcna in Brcmeliads. Journal of Agriculture and Urban Entomology 21: 239-248. MatLab. 2000. MatLab, ver. 6.0. Natick, Mass: The Math Works, Inc. Minitab. 2007. Minitab 15 Statistical Software, Inc. Mizrach, A., A. Hetzroni, M. Mazor, R. W. Mankin, T. Ignat, J. Grinshpun, N. D. Epsky, D. Shuman, and R. Heath. 2005. Acoustic trap for female Mediterranean fruit flies. Transactions of the American Society of Agricultural Engineers 48: 2017-2022. Nancarrow, L., and J.H. Taylor. 1998. The Worm Book. Ten Speed Press, Berkeley Califomia.160pp. Neher, D. 2001. Role of Nematodes in Soil Health and Their Use as Indicators. Journal of Nematology 33 (4): 161-168. http:l/wwwéuvm.edu/rLcaneher/Publications/JON3342001.wc Odegaard, F., B.A. Tommeras. 2000. Compost heaps-refuges and stepping- stones for alien arthropod species in northern Europe. Diversity and Distributions 6 (1):45-59. Quintanilla Tornel, M., A.J.M. Smucker, S. Gage, G. Bird, and E.J. Park. 2008. Impact of Tillage on the Acoustical Signatures during Rapid Hydration of Air- Dried Soil Aggregates. Submitted for publication to the Soil Science Society of America Jornal. In Review. 181 Rosenheim, J. A. 1998. Higher-Order Predators and the Regulation of Insect Herbivore Populations. Annual Review of Entomology 43:421-447. Tuomela, M., M. Vikman, A. Hatakka and M. Itavaara. 2000. Biodegradation of Ligning in a compost environment: a review. Bioresourse Technology 72(2): 169-183. Welch, PD. 1967. The use of fast Fourier transformation for the estimation of power spectra: A method based on time averaging over short, modified periodograms. IEEE Trans. Audio Electra-acoustics. 15:70-73. Zhang, M., R. L. Crocker, R. Mankin, K. Flanders, R. Hickling, and J. Brandhorst- Hubbard. 2000. Inferring activities and incidental soil-borne sounds of white grubs. In: Proceedings of the XXI International Congress of Entomology, Book 1, p. 238, Iguazzu Falls, Brazil. Zhang, M., R. L. Crocker, R. W. Mankin, K. L. Flanders, and J. L. Brandhorst- Hubbard. 2003. Acoustic identification and measurement of activity patterns of white grubs in soil. Journal of Economic Entomology 96: 1704-1710. 182 CONCLUSION In conclusion disturbance has an effect on ecosystems physical, biological and acoustical characteristics. Native forest and old field succession ecosystems have greater water soil aggregate stability and therefore do not slake when immersed in water (Chapter 1). This results in less noise. Acoustical methods are apparently an effective method to measure soil’s water-aggregate stability. Tillage has a negative effect on water-aggregate stability of soils (Amezketa 1999, Six et al. 1998, Pikul et al. 2009). Tilled soils had the most slaking and therefore the greatest sound power spectral density (PSD). The conclusions reached in Chapter 1 are: 1. The results of the acoustical research indicate that soil aggregates from no—till sites have higher resistance to slaking and generate less sound (PSD) than those from conventional tillage systems. 2. Native soils (non-disturbed soil) had the least slaking and less PSD when hydrated rapidly. 3. Acoustical methods appear to have potential for estimating water soil aggregate stability and degree of slaking. 4. Furthermore, the impacts of tillage on aggregate slaking can be potentially quantified using acoustical technology. 5. Our acoustic methods are faster and simpler than most of the conventional methods of determining soil aggregate stability, but more research need to be done in order to determine the 183 quantifiable correlation between the acoustical methodologies and the conventional methods. 6. Tillage reduces water-soil aggregate stability of soil; this in part is caused by the decrease in organic carbon in tilled soils (Six et al. 2000 and Zaher et al. 2005). Acoustical methods provide comparable results to the conventional methods of water-aggregate stability. Acoustical methods are rapid providing quantifiable results. In Chapter 2 it is concluded that Nematode Community Structure is a useful tool to determine ecosystem function, biodiversity and stability, and that the KBS/LTER forest and old field succession ecosystems tend to have higher biodiversity, maturity and stability than agricultural ecosystems. Among the agricultural ecosystems, the nc-input (organic) was more closely related to the native ecosystems than the no—till and conventional till ecosystems. Nematode community structure methods successfully separated the ecosystems. Soil nematode biodiversity, stability and maturity tended to be highest in the deciduous forest and the old field succession ecosystems at the Kellogg Biological Station, Long Term Ecological Research site (KBS/LTER). The lowest soil ecosystems nematode biodiversity, stability and maturity was found in the conventional or the no-till ecosystem, with the no-input (organic) having values in closer to the native ecosystems compared to the conventional tilled and no-till ecosystem (Chapter 2). It is thought that the chemical inputs and the crops used, has an effect on the nematode communities. Freckman and Ettema (1993), and 184 Neher et al. 2005 also found that nematode community structure methods effectively separated native and agricultural ecosystems with different disturbance levels. In Chapter 3, the greatest sound diversity and intensity was found in the native deciduous forest and old field successions ecosystems. The agricultural ecosystems did not have a high sound PSD in any of the recording dates and times. In the native ecosystems, sounds had temporal dimension. In August the insect sounds tended to increase as the darkness increased during the evening (Chapter 3). In part this might be an acoustic insect’s adaptation to escape bird predation. There was an attempt to record the sounds of soil invertebrates by placing a hydrophone near the soil surface. No significant difference was found between the treatments at the soil surface. Most of the insects sounds and call were from above ground and arboreal communities. Following an understanding of the importance of activation events to increase the activity of soil organism, an soil/compost experiment was done. This experiment measured the acoustical activity of natural soil/compost invertebrates after being activated by an addition of water. The soil/compost with water added had significantly greater sound intensity than the sterilized soil/compost without water added the sterilized compost with water added and the soil/compost with living invertebrates but without water added as an activation event (Chapter 4). l was concluded that agriculture and disturbance does have an effect on ecosystems physical and acoustical characteristics, biological soil diversity, maturity and evenness, and on above ground insect acoustical insect sound 185 diversity and intensity. Natural ecosystems perform and preserve many ecosystem functions. Agricultural ecosystems with the least disturbance have higher biodiversity and water soil aggregate stability than the more disturbed ones. Acoustical and nematode methods can be effective tools to study and compare ecosystems. 186 REFERENCES Amezketa, E. 1999. Soil Aggregate Stability: A Review. Journal of Sustainable Agriculture 14: 83-151. Freckman, D.W. and CH. Ettema. 1993. Assessing nematode communities in agroecosystems of varying human intervention. Agricultural Ecosystems & Environment 452239-261. Neher, D.A., J. Wu, M.E. Barbercheck and O. Anas. 2005. Ecosystem type affects interpretation of community measures. Applied Soil Ecology 30: 47-64. Pikul, J.L., G. Chilom, J. Rice, A. Eynard, T.E. Schumacher, K. Nichols, J.M.F. Johnson, S. Wright, T. Caesar and M. Michael. 2009. Organic matter and water stability of field aggregates affected by tillage in South Dakota. Soil Science Society of America Journal 2009 73: 197-206 Six. J., K. Paustian, E.T. Elliott, and C. Combrink. 2000. Soil Structure and Organic Matter: l. Distribution of Aggregate-Size Classes and Aggregate- Associated Carbon. Soil Science Society of America Journal 64: 681-689. Six, J., E. Elliott, K. Paustian, and J. Doran. 1998. Aggregation and soil organic matter accumulation in cultivated and native grassland soils. Soil Science Society of America Journal 62:1367-1377. Zaher, H., J. 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