J05H037/ N Eng y LIBRARlES lllllllllll“ll\l lllll‘llll‘ll . 3 1293 00533 0364 LIERARY Michigan State University l This is to certify that the thesis entitled A COMPARATIVE STUDY OF INTRASPECIFIC GENETIC HETEROGENEITY IN ACANTHAMOEBA EQLXEEAEé (AMOEBIDA, ACANTHAMOEBIDAE), BY ISOENZYME ANALYSIS presented by WAN GNAN HU has been accepted towards fulfillment of the requirements for MASTER degree in W SCIENCE Major professor 2\ MS U is an Affirmative Action/Equal Opportunity Institution Date AUG. 8, 1988 0-7639 _— fi* W..%. ‘— »- * —- {M811 LlBRARiES *7 M..-- ) . 1" a. 1‘; ‘1’ C t ,,.‘ ’\ “'2 RETURNING MATERIALS: book drop to remove this checkout from your record. FINES will be charged if book is returned after the date stamped below. Place in A COMPARATIVE STUDY OF iNTRASPECIFiC GENETIC HETEROGENEITY IN ACANTHAMOEBA POLYPHAQA (AMOEBIDA. ACANTHAMOEBIDAE). BY iSOENZYME ANALYSIS By Wang-nan Hu A THESIS Submitted to Michigan State University in partial Fulfillment of the requirements for the degeree of MASTER OF SCIENCE Department of Biological Science 1988 ABSTRACT A COMPARATIVE STUDY OF iNTRASPECIFIC GENETIC HETEROGENEITY iN ACANTHAMOEBA POLYPHAQA (AMOEBIDA. ACANTHAMOEBIDAE). BY ISOENZYME ANALYSIS By Wang-nan Hu The intraspecific genetic heterogeneity of Acanthamoeba golxghaga. a free-living. asexual amoeba from natural soil populations, was examined by isoenzyme analysis. In this study. 15 isoenzymes were used to analyze random. clonal isolates of amoebae from soil at three different study sites. Isolates were obtained from a northern hardwood forest in Michigan in 1986 and 1987. The results showed that 1, there were no statistically significant differences in mean genetic distances between sites and between the two years: the mean genetic distances ranged from 0.42 to 0.50; 2, analysis of zymograms suggest that this species may be a diploid organism: 3. greater genetic heterogeneity exists in natural populations of this organism than those of sexual reproductive organisms. but similar to those of asexual organisms. The reason for this may be due to the absence of sexual reproduction or due to rare genetic recombination. Dedicated to my wonderful parents. my lovely wife and my daughter iii ACKNOWLEDGEMENT I wish to express my thanks to Dr. R. Neal Band. my major professor. for his guidance and encourgement during the course of this study. 1 also wish to thank Dr. Stephen C. Bromley. my advisor. and Dr. Will J. Kopachik. my comittee member for their helpful suggestions in preparing my thesis. Special thanks are extended to Dr. H. T. Band. Dr. Stephen M. Milligan and Ms. Laura J. Anderson for their kind help. Finally. 1 would like to thank all the people who have assisted me in completion of my research. 1v CONTENTS Page LIST OF TABLES ' vii LIST OF FIGURES viii INTRODUCTION 1 MATERIALS AND METHODS 3 Sampling location and collection procedure 3 Microorganism identification and clonal isolation 3 Strains 4 Culture methods and sample preparation for isoenzyme electrophoresis Gel preparation Gel electrophoresis lsoenzymes studied. staining recipes and staining time Loci and allele assignment Null alleles The estimation of genetic distances RESULTS Genotypes Control experiment Repeated experiment Genetic variation wwwmmmmmmwmms Statistics DISCUSSION IO LITERATURE CITED l6 TABLES l9 FIGURES APPENDIX v1 35 36 LIST OF TABLES Table Page I. lsoenzymes studied. staining time. recipes and gel electrophoresis concentrations for each isoenzymes 19 II. Genotypes (site A. 1986) 20 III. Site A (1986). Nei’s genetic distances 21 IV. Genotypes (site 8. I986) 22 V. Site B (1986). Nei’s genetic distances 23 VI. Genotypes (site C. 1986) 24 VII. Site C (1986). Nei’s genetic distances 25 VIII.Genotypes (site A. 1987) 26 IX. Site A (1987). Nei's genetic distances 27 X. Genotypes (site 8. I987) 28 XI. Site 8 (I987). Nei’s genetic distances 29 XII. Genotypes (site c.1987) 30 XIII. Site C (1987). Nei’s genetic distances 31 XIV. Statistics for genetic distance (1986) 32 XV. Statistics for genetic distance (1987) 33 XVI. Two—way ANOVA for genetic distance 34 V11 LIST OF FIGURES Page 1. Diagram of characteristic isozyme patterns expected in heterozygotes. 35 viii INTRODUCTION Isoenzyme banding pattern analysis with electrophoresis has been widely used in the identification of species and to survey intra- or interspecies genetic diversity. Among amoebae. species and strains of Acanthamoeba and Naeglecia have been studied.(7.ll.l7). However. in most previous work the data were obtained from a limited number of axenic laboratory strains. Also considerable genetic selection may take place in establishing axenic cultures of amoebae. At this point. the genetic heterogeneity of the parent. natural population for each laboratory strain is unknown (11). The intraspecific heterogeneity of Acanthamoeba eglyghaga was examined by Jacobson & Band (II). In the present study. a comparative analysis of isoenzymes for two consecutive years was performed to determine if the intraspecific genetic heterogeneity of Acanthamoeba polyehaga remained the same or changed. when using natural populations. A. polypnggg is a free-living. asexual amoeba. found widely in soil and freshwater. The isolates were obtained from a northern hardwood forest at three different sites in 1986 and 1987. The population size of soil amoebae (number of amoebae per gram soil) for these two years at the study sites was smaller than previous years. possibly due to dry weather (13). The results indicated that the genetic heterogeneity within A. polyphaga was high. The mean genetic distance calculated was 0.42 to 0.50. However. there were no statistically significant differences in average heterogeneity between the two years and between the sites. MATERIAL AND METHODS Sampling location and collection procedure; Random soil samples were collected from three sites (A. B. C) in Dickinson County. Michigan. Sites A and C were located in Felch township at lat. 46°07’N. long. 87°54'w and lat. 46°03'N long. 87°55'N. respectively. while site B was located in Norway township at lat. 45°56’N. long. 87°56’w. Each site consisted of a 10 by 20 meter area in a northern hardwood forest (11). With the aid of a tube sampler (diameter : 2 cm.) both organic and mineral layers were collected and subsequently two inches from each horizon was brought back to the laboratory. Amoebae were isolated from the soil samples using a 96—multi—well plate. soil dilution technique and Escherichigicoli (strain K-lZ) as the food organism (11). The above procedures were followed between the months of June to October for the two consecutive years of 1986 through 1987. Microorganism identification:§nd clgggigisolation. Microorganisms were identified as Acantnamoeba lexehaga on the basis of cyst morphology (16). To each well identified as containing A. golxehaga. one drop of LS saline (50 mM NaCl. 4.6 mM MgSO 0.36 mM CaCl2)(2) was added; then the 49 amoebae were withdrawn with a pipet and placed in a Petri dish containing LS saline and agar (1.51 w/v) (LS-agar). To obtain single amoebae for clonal isolates. a piece of agar 4 which contained the smallest number of A. polyphagg was cut out and placed on the lower edge of a slanted Petri dish containing LS-agar. Then amoebae were cultured at 23°C with E. coli (K—12) spread over the dish. The amoebae migrated from the lower edge towards the top of the Petri dish and distributed widely. A single amoeba was isolated from this plate. Then. the cyst shape was checked again and the same procedure was repeated one more time. Strains. A total of 30 strains of A. polyphagg were randomly isolated and cloned from 30 soil samples of the three sites. 10 strains per site. for each year tested. Culture method§_§nd samp;§:pre2§;§tion for isoenzyme electrophoresis; E. coli (K-12) was cultured in 200 ml LB medium (NaCl 10 g. Bacto Tryptone 10 g. Bacto Yeast Extract 5 g. Difco Laboratories. Detroit. Mi. U.S.A.. H20 to I Liter. pH 7.5) for 18 - 20 hr at 37°C. The bacteria were harvested by centrifugation (9000 g) and washed two times in LS saline. then suspended in 30 ml of LS saline and distributed in 10 ml volumes to three 250 ml plastic tissue culture flasks (Corning Science Products). Subsequently. clonal isolates of Awgpolypnggg were inoculated into these tissue culture flasks and incubated at 23°C. Once the peak of population growth was reached (about 36 - 72 hr). the amoebae from three flasks. representing 18-24 x 106 amoebae. were harvested by centrifugation. washed twice in LS saline to remove bacteria and pelleted. The amoebae were then 5 suspended in 200 ul of lysis buffer and frozen over liquid N until electrophoresis. Lysis buffer consisted of 10 mM 2 Tris. 1 mM EDTA. (pH 6.8) to which 0.05 mM NADP was added before use. Gel gregaration. A vertical discontinous polyacrylamide gel slab was used (12). Spacer gel was 6% (w/v) (pH 6.7) and resolving gel (pH 8.2) was used at different concentrations (Table 1). Gel electrophoresis. Samples were removed from liquid N2. thawed at room temperature. suspended in 200 ul of sample solution (10 ml glycerol. 90 ml electrode buffer (12)). After centrifugation in a microcentrifuge (Fisher model 2358) for 30 sec. 50 ul of sample supernatant was injected into gel electrophoresis wells. Gel electrophoresis was run with cold water in an ice bath: running time was about 8 hr at 200 v with pH 8.2 electrode buffer. Control experiments with E. cgli. (K-12) was also carried out on the same gel in order to differentiate between the bands of A; golyghaga and E. coli. A 50 ul sample of 250 mg (dryweight)/ml bacterial supernatant was loaded into a gel well. When a different bacteria species. Klebgiella engummiae was used as the food source for A. polypgggg. the zymograms were the same. lsoenzymes studied, staining recipes and stainigg time. Fifteen isoenzymes were examined (Table I). Staining was 6 done in darkness at 37°C: chemical reagents for staining were from Sigma Chemical Company. Loci and:g;lele assignment. Loci assigned were based on clustering patterns and numbered from anode to the cathode according to each isoenzyme banding pattern (17). The alleles at each locus (based on banding patterns in which one band represents a homozygote and multiple bands a heterozygote (10)). were also coded from the most anodic band to the most cathodic band. Homozygotes were designated by one number and heterozygotes by two numbers. Heterozygous monomers consisted of two electrophoretic bands. dimers three bands. trimers four bands and so on. with the homozygote represented by the two outer bands of the respective heterozygote (10). Null alleles. The absence of isoenzyme activity at each corresponding locus was defined as a "null allele". and also given a 0 number in order to be in agreement with the allele assignment for each locus. The ggtimation of gggetic distanceg; Calculations of genetic distance were based on Nei's standard formula (14) and done with the aid of a computer program (8. 9). Genetic distance is the genetic difference between populations as expressed by a function of gene frequences. Nei’s standard genetic distance formula is a statistical method by which the average number of codon differences per locus can be estimated from gene frequency data. The frequencies of 7 alleles segregating at each locus is as follows : it will be equal to I for a homozygote with a given allele. the frequency of the other allele at the same locus then being 0. For a heterozygote. the two alternative alleles of a given locus both have a frequency 0.5. Hence the alleles frequencies have value 0. 0.5 and 1 (17) (see Appendix A for further detail). RESULTS Genotypegg The zymograph of the 30 isolates for each year showed monomorphic and polymorphic banding patterns. A total of 30 loci were assigned. Three out of 30 loci were monomorphic. AAP 2. PGM 2 and LTD 2 (for abbreviations see Table I). Tables II. IV. VI. VIII. X and X11 showed the genotypes for each clonal isolate of different sites and different years based on allelic frequencies. These tables indicated varying degrees of diversity in genotypes among the polymorphic loci and there was not any two isolates which had the same patterns over the 30 loci. For example. between the isolates 4 and 5 (site A. 1987 at Table VIII). 27 (including three monomorphic loci) out of 30 loci showed the same genotypes. two loci (ME 5 HK) had one common allele at each locus and one locus (SOD 2) between the isolates had unlike alleles. Between the isolates 2 and 8 (site 8. 1986 at Table IV). however. only eight out of 30 loci had the same genotypes. eight loci had a common allele in each locus and the other 14 loci had unlike alleles. The differences between any other paired-isolates in genotypes varied between these two extremes. Control exoeriment. No isoenzyme activity of E. goli was detected on these gels. confirming that all the bands belonged to amoebae. 9 Regeated experiment. In later. repeated experiments for isolates with fresh cell extract were done and identical banding patterns were observed. The results indicated that the banding patterns for isolates were stable over a period of time. fignetic varlgtion. Genetic distances between clonal isolates from each site were calculated and given in Tables III. V. VII. IX. XI and XIII.. The values of genetic distance ranged from 0.067 to 0.839 over the three sites and the two years. The two extreme values were the allelic comparisons made between isolates 4 and 5 (site A. 1987) and isolates 2 and 8 (site 8. 1986). Statistics; Mean genetic distances for each site (Tables XIV s XV). one-way analysis of variance for three soil sites each year (Tables XIV s XV) and two-way analysis of variance for different sites and different years (Table XVI) were done respectively. The values of mean genetic distance ranged from 0.42 (site A. 1986) to 0.50 (site B. 1986). Yet. there were no statistically significant differences in the average genetic distances calculated between the sites and between the years (in one—way and two-way analysis of variance). Therefore. it was concluded that there was no change in genetic distances between the two consecutive years and there were no differences due to site effects. DISCUSSION The level of ploidy of A. polyphagg is unknown (4). However. the zymograms showed complex banding patterns at most of the loci. One possible explanation. in terms of the multiple banding patterns. is that the double-band pattern was not due to heterozygotes. but due to the mixing of two clonal isolates. this was unlikely. For example. isolate 2 (table VIII. 1987) showed double bands at the GDH 2 locus (genotype 1/2). One may think that this was the result of mixing of isolates 3 and 4 (genotypes 2 a I). but this assumption could not be explained by the banding pattern in ICU and LDH for isolate 2 (genotypes 1/3 a 0). The genotypes of isolate 3 and 4 at these two loci were 1 a 1 and 0 a 1/2. There may exist two other explanations for the complex banding patterns such as gene duplication in a haploid organism or alternative splicing of a transcript. However. this is not my case because 25 out of 30 loci showed multiple bands. Therefore. the above two possibilities cannot explain the high frequencies of multiple banding paterns even if they are not rare events. The banding patterns for several enzymes suggested that A; golyghaga may be a diploid organism because the zymograms of several enzymes showed that the banding patterns were similar to those patterns commonly observed in diploid organisms. For instance. at LDH. PGM 1 and ME loci zymograms 10 ll exhibited three band—patterns. of which the middle band was stained more darkly than the two outside bands (the activities of the isozymes formed in heterozygotes are 1:2:1 for dimer. see Fig.1) and the three bands exhibited equidistance between bands. This is the typical dimeric heterozygous pattern. found in diploid organism (5.10 8 18). When the number of chromosomes in a species is difficult to count. zymograms of isoenzymes are used to estimate the ploidy level (4). Although this is a good method to be used for estimating ploidyism. it may not be as accurate. and therefore. it is not the most reliable method. My data didn't rule out the possibility of polyploidy in this species. In Amoeba proteus. it was reported that there may exist polyploid cells in its natural population. and they may play a role in genetic variability of those asexually growing organisms (1). Because there is no closer diploid species of this genus as a control to compare the zymograms and sometimes the banding patterns between diploid and polyploid organism for some enzymes may be the same (19). therefore. it is difficult to Judge whether A. gglxghaga is a polyploid species. More other lines of evidence are needed to prove it further. In zymograms. the complex banding patterns and high loci numbers for some enzymes may be due to the addition of genome. or by the gene duplication and then during the course of evolution they diverged. 12 Nei’s genetic distance measure has been widely used to evaluate the genetic variation within species or between species. This method applies to any kind of organism without regard of ploidy or mating scheme. This is because the definition of 1 and D (see Appendix A) depends solely on gene frequencies rather than on others (14). The mean genetic distances 1 calculated of A. polyphagg ranged from 0.42 to 0.50. It was much greater than those of multicellular. sexual organisms within species (15). For example. within the Qrogophilg willistoni group. the genetic distance is 0.008 - 0.049. However. the value of genetic distance between the sibling species of Q. willistoni group is 0.54 i 0.05. non—sibling species of D.willi§toni group is 1.1 t 0.06 (15). For the unicelluar. free—living amoebae of the genus Naegleria. including three species. N; lovaniensis. N. fowleri and N. australiensis. the genetic distances within each species were obviously low (17) and similar to those of sexual organisms (15). The mean genetic distance for N. lovaniensig was 0.081. for N. fowleri 0.022 and for N. australiensis 0.023; six to twenty times lower than that of A.;polypbggg. In contrast. the value of interspecific genetic distance was 1.222 between N; lovgniengig and N. fowleri. 3.733 between N. lovgniensis and N. australiensis and 3.273 between N. fowleri and N; gustraliensis. On the basis of the statistical analyses of their data and other evidence. Cariou 8 Pernin speculated 13 that genetic recombination existed in Naegleria (5). Based upon the above examples. the heterogeneity within 5; gglyghaga is similar to that which is derived from comparisons made between sibling species of the Q; willistoni group. and much greater than that within each species of Ngegleria. If A. polyphagg were a sexually reproducing organism. the value of genetic distance within this species could not possibly be so high. Here is another example. There was little genetic diversity when analysing isozyme banding patterns (14 out of 16 loci is the same) among sexual isolates in Dictxgstelium discoideum. which are simple soil amoebae. In contrast. asexual isolates differed from sexual isolates at 13 of 16 loci. High heterogeneity existed between sexual isolates and asexual isolates (3). i think the high genetic heterogeneity of A; gglyghaga may be due to the accumulation of mutations and the absence of sexual reproduction or very rare genetic recombination. thus inhibiting the gene flow. Interestingly. a chi-square test showed that. of the genotype frequencies. 14 out of 25 polymorphic loci in this species didn’t fit the Hardy-Weinberg Equilibrium. Thus. if mating between isolates occurred. it was rare and not random. Similar high genetic heterogeneity within Trxpgnosoma cruzi. which is a unicelluar. diploid parasite. has been reported. The mean genetic distance of this species was 0.757 (18). Their statistical study indicated that large linkage 14 disequilibrium between alleles existed at paired loci. which reached maximum possible values for almost all of the locus pairs (20). The authors stated that this result was most consistent with the hypothesis that genetic recombination is absent or very rare in T. cruzi natural populations. There is no definitive evidence for sexual reproduction of A; golyghaga (4). These data don't eliminate the possibility of mating in this species. but more direct evidence is needed. An idea. which if achieved would yield such proof. would be to genetically mark isolates differently. For example. one could use two different genetic markers to mark two or more different strains: the different strains would then be mixed. cultured. and processed through electrophoresis. If it was found that in one cell the genetic markers of the two different strains existed. one could infer that mating occurred. The genetic distances calculated by Jacobson (11) for the A. polyphagg ranged between 0.286 and 2.106 over three sites and mean genetic distance were 1.06 to 1.15. which were higher than my results. Two possible explanations for that is this. One is that fewer strain numbers were used and fewer loci were used as well. The data were based on 15 strains and 10 loci. but my data came from 30 strains and 30 loci. The result I calculated showed that the value of the mean genetic distance decreased by increasing the numbers of strains and loci used. According to this. the value of the 15 mean genetic distance within species may be related to the number of strains and loci that were used. To obtain more reliable results. a greater number of isolates were compared using many different isoenzymes. This idea was also supported by statistics. the larger number of strains you use. the shorter confidence interval of the mean. i.e. the more accurate mean internal. The other explanation may be due to climate. which may be an important factor that affects the genetic heterogeneity within this species. The population sizes (number of amoebae per gram soil) of A. polyphggg in 1986 (8-16x103 amoebae/per gram soil) and 1987 (20-50x103 amoebae/per gram soil) were much smaller due to a drought (13) in the sampling areas than that in 1985 (1.1-1.6x106 amoebae/per gram soil)(the isolates Jacobson (11) used were from 1985). During the wet season. there were more kinds of food for amoebae and less presure of genetic selection. therefore decreasing competition within and between the species. large pooulation sizes and greater genetic diversity. On the other hand. a dry season provides less kinds of food. increasing competition and greater presure of genetic selection. small population sizes and less genetic diversity within species. LITERATURE CITED 1. Afon’kin. 8. Yu. 1986. Polyploid cells in AmoebaNprotggg culture. Acta Protozool.. 25 : 41 - 54. 2. Band. R. N. s Morlock. S. 1969. The respiratory metabolism of Acanthamoeba rhgoggg during encystation. J. Gen. Microbiol.. 59 : 351 - 358. 3. Briscoe. D. A.. Gooley. A. A.. Bernstein. R. L.. Mckay. G. M. 5 Williams. K. L. 1987. Genetic diversity in cellular slime molds : Allozyme electrophoresis and a monoclonal antibody reveal cryptic species among Dictyggteligm discoideum strains. Genetics 117 : 213 - 220. 4. Byers. T. J. 1986. Molecular biology of DNA in Acanthamoeba. Amoeba. Entamoeba. and Naegleria. Interngtiong) review of cytology. Vol. 99. p. 311. 5. Cariou. M. L. a Pernin. P. 1987. First evidence for diploidy and genetic recombination in free-living amoebae of the genus Naegleria on the basis of electrophoretic variation. Genetics 115 : 265 - 270. 6. Daggett. P.-M. 8 Nerad. T. A. 1983. Procedures for isoenzyme electrophoretic analysis. American Tyge Culture Coligction. Rockville. Maryland. USA. 7. De Jonckheere. J. F. 1983. Isoenzyme and total protein analysis by agarose isoelectric focusing. and taxonomy of the genus Acanthamoeba. J. Protozool.. 30 : 701 - 706. 16 17 8. Green. D. M. 1979. A BASIC computer program for calculating indices of genetic distance and similarity. J. Hered.. 70 429 - 430. 9. ----------- . 1984. Calculation of indices of genetic distance and similarity : unbiased estimation corrected for sample size in BASIC computer program. J. Hered.. 75 : 415. 10. Harris. H. 1976. Handbook of enzyme electrophoresis in human genetics. North-Holland Publishing Co.. Amsterdam. 11. Jacobson. L. M. 8 Band. R. N. 1986. Genetic heterogeneity in a natural population of Acanthamoeba golyghaga from soil. and isoenzyme analysis. g; Protozool.. 34 : 83 - 86. 12. Maizel. J. V. 1971. Polyacrylamide gel electrophoresis of viral proteins. in methods in virology. academic Press. New York. pp. 179 - 24. 13. National Oceanic and Atmospheric Administration. 1987. Climatological data. Michigan. Dec. 1987. Vol.102 No. 12. 14. Mei. M. 1972. Genetic distance between populations. Am; Ngt.. 106 : 283 - 292. 15. ------ . 1987. Molecular evolutionary genetics. Columbia University press. New York. 16. Page. F. C. 1967. Re-definition of the genus Acanthamoeba with descriptions of three species. g; Protozool.. l4 . 703 — 724. 17. 18. I9. 20. 18 Pernin. P.. Cariou. M.-L 8 Jacquier. A. 1985. Biochemical identification and phylogenetic relationships in free-living amoebae of the genus Naegleria. J. Protozool.. 32 : 592 -603. Tibayrenc. M. 8 Ayala. F. J. 1988. Isozyme variability in Trypanosomg cruzi. the agent of Chagas’ disease : genetical. taxonomical. and epidemiological significance. Evolution. 42 : 277 - 292. Wright. C. A. 8 Rollinson. D. 1981. Analysis of enzymes in the Bulinug;tropicus/trunggtgg comples (Mollusca: Planorbidae). J.;Ngt. Higt. 15 : B73 — 885. Zhang. 0.. Tibayrenc. M. 8 Ayala. F. J. 1988. Linkage disequilibrium in natural populations of Trxganosoma cruzi (flagellate). the agent of Chagas' Disease. g; Protozool.. 35 : 81 — 85. 19 TABLE I. lsoenzymes studied. staining time. recipes and gel electrophoresis concentrations for each isoenzyme. - Resolving Staining Staini g Isoenzyme Geli!) time(hr)a recipe Acetyl esterase (AE) 10.75 3 A Arginine amino peptidase (AAP) 10 overnight A Butyryl esterase-2 (BE-2) 10.75 2.5 A Glutamate dehydrogenase (GDH) 10.75 2.5 B Hexokinase (HK) 10.75 2 B B—hydroxybutyrate dehydrogenase 10.75 2 8 (B-HBDH) Isocitrate dehydrogenase (1CD) 10 2 B Lactate dehydrogenase (LDH) 10.75 2.5 A Leucine amino peptidase (LAP) 10 overnight A Malic enzyme (ME) 10 1.5 B Phosphoglucomutase (ROM) 10 1 B 6—phosphogluconate dehydrogenase 11.25 2.5 B (6-PGD) Propionyl esterase (PE) 10.75 3 B Superoxide dismutase (500) 11.25 overnight B L-threonine dehydrogenase (LTD) 10.75 1.5 B gStaining in the dark at 37°C. A. from Daggett (6): B. from Pernin (l7). TABLE II. Genotypes (site A. 1986)8 20 Clonal isolates Loci l 2 3 4 5 6 7 8 9 10 AE 1 O 0 3 1/4 3 1/4 1/4 3 1/4 1/4 AE 2 1/2 2 1/2 1/2 1/2 1/2 1/2 1/2 1/2 I/Z AE 3 1/3 1/2 1/3 l/Z 1/3 1/3 1/3 1/3 1/3 1/2 AE 4 2/3 2 2 1/5 2 1/5 1/5 2 1/5 1/5 AAP l 1 1/2 1/3 l/3 1/3 1/2 1/3 1/3 1/2 1/2 AAP 2 1 l l l i I I i i i BE-Z 1 0 0 0 0 O 1/2 1/2 1/2 1/2 1/2 BE-Z 2 1/2 1 1/2 1 1/2 1 l l l 1 BE-Z 3 1/2 2 1/2 2 1/2 2 2 2 2 2 BE-Z 4 2 l l l 1 1/2 1/2 i/2 1/2 1/2 BE-Z 5 1 i I I 1 1/2 1/2 1/2 I/2 I/Z BE-Z 6 i I/2 1/2 1/2 1/2 1 1 1 I I GDH 1 0 I I I l i 1 0 I GDH 2 1/2 1 1/2 2 2 1 1/2 1/2 2 I HK 2 l I I i I I l 1 1 B-HBDH 2 0 2 1/2 2 0 2 2 0 0 1CD 1/3 2 2/3 1/3 1 2 2 2 Z 3 LDH 1/2 I 1/2 0 1/2 I/Z 1/2 0 1/2 1/2 LAP 1/2 1/2 1/2 1/2 1/2 1/2 1/2 1/2 2 2 ME 1/2 I l I i I i/2 1/2 1/2 1/2 PGM 1 1/2 0 1/2 0 1/2 1/2 1/2 1/2 1/2 1/2 PGM 2 l l l I I I 1 i i i 6-PGD 1/2 0 I 0 l/2 0 1/2 1/2 0 0 PE 1 2 2 2 2 1/4 1/4 1/4 2 1/4 1/4 PE 2 1/5 2/5 1/5 2/5 2/4 2/4 2/4 2/5 2/4 2/4 PE 3 O 0 0 0 1/3 1/3 1/3 0 1/3 1/3 500 l 3 1 2/3 2/3 2/3 1/3 1/3 2/3 1/3 1/3 500 2 1/2 1 1/2 1 i 2 1/2 1 1/2 1/2 LTD 1 2 1/2 1/2 1/2 2 1/2 1/2 1/2 1/2 1/2 LTD 2 i I l i I l I l i l , 5 Abbreviations represent the loci coding for the various enzymes. the mumbers representing multiple forms of the enzyme. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers; 0 reprsents a null allele. TABLE III. Site A (1986). Nei's genetic distances.8 21 Clonal isolates l 2 3 4 5 6 7 8 9 10 1 - 0.572 0.323 0.548 0.452 0.710 0.533 0.366 0.613 0.681 2 - 0.345 0.293 0.518 0.388 0.517 0.467 0.500 0.415 3 - 0.314 0.189 0.525 0.385 0.261 0.646 0.580 4 - 0.372 0.519 0.456 0.389 0.513 0.457 5 - 0.536 0.326 0.400 0.530 0.550 6 - 0.141 0.516 0.150 0.109 7 - 0.310 0.194 0.210 8 - 0.399 0.571 9 - 0.173 10 - aNull alleles included. 22 TABLE 1v. Genotypes (site e. 1986)8 Clonal isolates Loci 1 2 3 4 5 6 7 8 9 10 AE 1 3 0 3 3 1/4 1/4 1/4 1/4 3 1/4 AE 2 1/2 1/2 1/2 1/2 0 0 0 0 1/2 0 AE 3 2/3 1/3 1/3 1/3 0 0 0 0 1/3 0 AE 4 2 2 2/3 2 1/5 1/5 3/5 1/5 2 1/5 AAP I 1 1/3 1/3 1/3 1/2 1/3 1/2 1/2 1/2 1/3 AAP 2 l 1 l 1 1 i 1 1 1 I BE-2 1 0 1/2 2 0 1/2 0 1/2 1/2 1/2 1/2 BE-Z 2 1/2 1/2 1 1/2 1 1/2 1 1 I I BE-2 3 1/2 1/2 1/2 2 2 1/2 2 2 2 2 BE-2 4 1 1 1 1/2 1/2 1/2 1/2 1/2 1/2 1/2 BE-2 5 1 I 1 1/2 1/2 1 1/2 1/2 1/2 2 BE-Z 6 1 I 1 1/2 2 2 l 1 I 1 GDH 1 1 0 0 1 1 1 1 1 1 1 GDH 2 1 2 2 1 1 1/2 1 l 1 2 HK ' 2 2 2 1 1 2 1 1 1 1 B-HBDH 1 2 2 0 0 0 0 0 0 1 1CD 2 0 3 1 2 2 2 2 1 2/3 LDH 0 1/2 0 0 1/2 0 1/2 1/2 1/2 1/2 LAP 1/2 1/2 1/2 2 1/2 1/2 1/2 2 2 2 ME 1 1/2 1 1 1/2 1/2 1 2 1 1/2 PGM 1 0 1/2 1/2 0 1/2 1 1/2 1/2 1/2 1/2 PGM 2 I 1 I 1 1 1 I 1 1 1 6-PGD 1 1 2 0 1 1/2 I 0 l 0 PE 1 2 2 2 1/4 1/4 1/4 1/4 1/4 2 1/4 PE 2 1/5 1/5 1/5 4 2/4 2 2/4 2/4 1/5 4 PE 3 0 0 O 1/3 1/3' 1/3 1/3 1/3 0 1/3 500 1 1/3 2/3 3 3 1/3 2/3 1/3 1/3 1/3 1/3 500 2 2 I 2 1 2 1 2 2 2 1 LTD 1 2 1/2 2 2 2 1/2 1/2 1/2 1/2 1/2 LTD 2 1 1 1 I I I 1 i I 1 a Abbreviations represent the loci coding for the various enzymes. the numbers representing multiple forms of the enzyme. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers; 0 represents a null allele. TABLE V. Site 8 (1986). Nei's genetic distances. 23 Clonal isolates l 2 3 4 5 6 7 8 9 10 l - 0.502 0.381 0.527 0.596 0.539 0.521 0.690 0.350 0.756 2 ~ 0.304 0.758 0.828 0.637 0.728 0.839 0.496 0.608 3 - 0.644 0.804 0.689 0.689 0.816 0.463 0.768 4 - 0.538 0.447 0.538 0.512 0.453 0.384 5 - 0.336 0.087 0.139 0.328 0.322 6 - 0.423 0.454 0.749 0.533 7 - 0.125 0.239 0.276 8 - 0.340 0.243 9 - 0.479 10 - aNull alleles included. TABLE VI. Genotypes (site c. 1986)8 24 Clonal isolates Loci 1 2 3 4 5 6 7 8 9 10 AE 1 2 3 3 0 3 1/4 1/4 1/4 1/4 1/4 AE 2 0 1/2 1/2 1/2 1/2 1/2 2 1/2 1/2 1/2 AE 3 1/3 1/3 1/3 1/3 1/3 1/2 1/2 1/2 1/2 1/2 AE 4 2/4 2 2 2 2 1/5 1/5 1/5 1/5 1/5 AAP 1 1/3 1 1/3 1/3 1/2 1/2 1/3 1/3 1/2 1/3 AAP 2 1 1 I 1 I i 1 l 1 i BE-2 1 0 0 2 1/2 2 1/2 1/2 1/2 1/2 1/2 BE-2 2 1 1/2 1/2 l [/2 i I 1 1 I BE-Z 3 1/2 2 1/2 1/2 1/2 2 2 2 2 2 BE-2 4 2 1 l 1 1 1/2 1/2 1/2 1/2 1/2 8E-2 5 0 1 1 l 1 1/2 1/2 1/2 1/2 1/2 BE-2 6 1/2 1 1/2 1/2 1/2 1 I 1 1 1 GDH l 0 1 1 1 0 1 0 1 1 0 GDH 2 1/2 I 1 1/2 2 1/2 1 l 1 1/2 MK 2 2 I 1 2 1 1 2 1 1 B-HBDH 2 2 2 2 1/2 2 2 0 0 0 ICD 3 1/3 1/2 1/2 2/3 2 2 2 2 2 LOH 1/2 0 1/2 1/2 1/2 1/2 1/2 1/2 1/2 1/2 LAP 1/2 1 1/2 1/2 1 1/2 1/2 1/2 1/2 2 ME 1/2 1 1 1 1 1/2 1 1/2 1 1/2 PGM 1 1/2 1/2 1/2 1/2 1/2 1/2 1/2 0 1/2 1/2 6-PGD 1/2 2 1 l 1 1/2 1/2 0 0 0 PE 1 2/3 2 2 2 2 1/4 1/4 1/4 1/4 1/4 PE 2 3/5 2/5 1/5 1/5 1/5 4 2/4 4 4 4 PE 3 2/3 0 0 O 0 1/3 1/3 1/3 1/3 1/3 500 1 1/3 1/3 3 2/3 2/3 2/3 1/3 1/3 1/3 1/3 500 2 1/2 1/2 1 1 1 1 1/2 1/2 2 1 LTD 1 2 2 1/2 2 2 2 2 2 2 2 LTD 2 1 I 1 1 1 l l l 1 1 5 Abbreviations represent the loci coding for the various enzymes. the numbers representing multiple forms of the enzyme. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers: 0 represents a null allele. TABLE VII. Site C (1986). Nei's genetic distances.8 25 Clonal isolates 2 3 4 5 6 7 8 9 10 1 0.511 0.670 0.594 0.520 0.635 0.519 0.705 0.791 0.658 2 - 0.287 0.348 0.339 0.555 0.529 0.598 0.609 0.816 3 - 0.104 0.226 0.404 0.433 0.638 0.548 0.596 4 - 0.243 0.326 0.406 0.606 0.518 0.526 5 - 0.547 0.559 0.721 0.781 0.654 6 - 0.142 0.241 0.179 0.182 7 - 0.284 0.191 0.166 8 - 0.122 0.178 9 - 0.148 10 - aNull alleles included. 26 TABLE VIII. Genotypes (site A. 1987)8 Clonal isolates Loci 1 2 3 4 5 6 7 8 9 10 AE 1 2/3 1 2/3 2/3 2/3 2/3 2/3 3 2/3 2 AE 2 1/2 1/2 [/2 2 2 2 2 1/2 1/2 1/2 AE 3 l 1 1 0 0 2 2 2 1 1/2 AE 4 1 1 1 1/2 1/2 1/2 1/2 1/2 1 I AAP 1 1/3 1 1/3 1/2 1/2 1/2 1/3 1/2 1/3 1 AAP 2 l 1 1 1 1 i I I 1 l BE-2 1 0 0 2 1/2 1/2 1/2 0 0 1/2 1/2 8E-2 2 1/2 2 2 1/2 1/2 2 2 1/2 2 2 BE-2 3 1/2 1/2 1/2 2 2 1 2 1/2 1/2 2 BE-Z 4 2 0 2 1/2 1/2 1/2 1 1/2 2 2 BE-2 5 1 1 1 1/2 1/2 1/2 0 1/2 1 1 BE-2 6 1 I l l 1 1/2 1 2 l 1 GDH 1 0 0 l 1 l 1 1 1 1 0 GDH 2 1 1/2 2 1 1 1 1/2 1 1/2 1/2 HK 2 2 2 1 1/2 1 2 2 2 2 B-HBDH I 2 2 0 0 0 0 0 2 1/2 ICD 1 1/3 1 1 1 3 1/3 1 l l LDH 0 0 0 1/2 1/2 1/2 1/2 1 0 0 LAP 1/2 2 1/2 2 2 2 1/2 1/2 1/2 1/2 ME I 1 1 1 1/2 1 1/2 1 l 1 PGM I 0 1 0 1/2 1/2 1/2 1 1/2 0 0 PGM 2 1 1 1 1 1 l 1 1 l l 6-PGD 0 1/2 1/2 I 1 1 0 1 0 1 PE 1 1/2 1 1/2 3 3 1/2 1/2 1/2 1/2 2 PE 2 1/3 1/3 1/3 2 2 2 2 2/3 1/3 1/3 PE 3 1/2 1/2 1/2 2/3 2/3 2/3 2/3 2/3 1/2 1/2 500 1 2 2 2/3 1/3 1/3 1/3 1/3 1/3 2 2/3 500 2 2 2 1/2 0 2 1/3 1/3 1/3 2 1/2 LTD 1 1/2 1/2 1/2 2 2 1/2 1/2 1/2 1/2 1/2 LTD 2 1 I l 1 1 l 1 1 l 1 . a Abbreviations represent the loci coding for the various enzymes. the numbers representing multiple forms of the enzymes. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers; 0 represents a null allele. TABLE IX. Site A (1987). Nei's genetic distances.8 27 Clonal isolates 2 3 4 5 6 7 8 9 10 1 0.281 0.266 0.770 0.661 0.832 0.640 0.578 0.147 0.197 2 - 0.315 0.813 0.702 0.735 0.661 0.659 0.298 0.326 3 - 0.641 0.579 0.628 0.619 0.556 0.078 0.151 4 - 0.067 0.262 0.444 0.372 0.672 0.592 5 - 0.299 0.389 0.350 0.570 0.533 6 - 0.345 0.246 0.682 0.618 7 - 0.303 0.590 0.630 8 - 0.607 0.548 9 - 0.187 10 - aNull alleles included. 28 TABLE x. Genotypes (site B. 1987)8 Clonal isolates Loci I 2 3 4 5 6 7 8 9 10 AE 1 1/2 2/3 2/3 3 1/3 2/3 2/3 2/3 1/2 [/2 AE 2 1/2 2 2 2 1/2 2 1/2 1/2 1/2 1/2 AE 3 1 2 1 0 2 2 1/2 1 1 1 AE 4 1 1/2 1/2 1/2 1 1/2 0 1/2 1 1 AAP 1 1 1/2 1/2 1 1/3 1/2 1 1/3 1 1/3 AAP 2 1 I 1 1 l 1 i 1 1 1 BE-Z l 2 2 1/2 1/2 2 1/2 2 1 1/2 1/2 BE-Z 2 2 2 1/2 1/2 1/2 1/2 1/2 1/2 2 2 BE-Z 3 1/2 2 1 1 1/2 1 1/2 2 1/2 1/2 BE-Z 4 0 1/2 1/2 1/2 0 1/2 1 1 1 1 BE-Z 5 1 1/2 0 1/2 1 1/2 1 0 1 1 8E-2 6 1 1 1 i l 1 1 1 l I GDH l 0 0 l I 1 I 1 1 0 1 GDH 2 2 1 1 1 1/2 1 1/2 1/2 1/2 1/2 MK 2 1/2 2 1/2 2 1/2 2 1/2 2 2 B-HBDH 2 1/2 0 0 2 2 2 0 2 2 ICD 2 1 1 1 1/3 I l 0 1 0 LDH 0 1 1/2 1/2 0 1/2 I 1 0 0 LAP 1/2 0 2 1/2 1/2 1/2 1/2 0 1/2 1/2 ME 1 1/2 1 l 1 i 1 1/2 1 1 PGM 1 0 1/2 1/2 0 0 1/2 0 1/2 0 1 PGM 2 1 1 1 l I 1 l I 1 1 6-PGD 1 0 0 1/2 2 1 0 2 0 0 PE 1 1/2 1/2 1/2 2 1/2 2 1/2 1/2 1/2 1/2 PE 2 1/3 2 2 2 1/3 2 1/3 3 1/3 1/3 PE 3 1/3 1/2 1/2 2/3 1/3 2/3 1/2 2/3 1/2 1/2 500 1 2/3 1/3 1/3 1/3 2/3 1/3 2 1/3 2/3 2/3 500 2 2 1/3 1/3 1/3 2 3 2 1/3 2 2 LTD 1 1/2 2 2 1/2 1/2 1/2 1/2 1/2 0 1/2 LTD 2 1 l 1 1 1 i 1 1 1 1 a Abbreviations represent the loci coding for the various enzymes. the numbers representing multiple forms of the enzyme. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers: 0 represents a null allele. 29 TABLE XI. Site 8 (I987). Nei's genetic distances.8 Clonal isolates 1 2 3 5 6 7 8 9 10 l - 0.692 0.747 0.671 0.225 0.639 0.374 0.818 0.205 0.291 2 - 0.352 0.457 0.629 0.314 0.461 0.537 0.507 0.579 3 - 0.248 0.640 0.265 0.438 0.405 0.518 0.444 4 - 0.474 0.185 0.444 0.500 0.581 0.640 5 - 0.463 0.273 0.682 0.313 0.291 6 - 0.433 0.586 0.589 0.511 7 - 0.618 0.236 0.270 8 - 0.714 0.457 9 - 0.186 10 - a Null alleles included. TABLE x11. Genotypes (site c. 1987)8 30 Clonal isolates Loci 1 2 3 4 5 6 7 8 9 10 AE 1 3 2/3 2/3 2/3 1/3 2/3 2/3 2/3 1/2 2/3 AE 2 1/2 2 2 2 1/2 1/2 2 2 1/2 2 AE 3 1 l 1 0 1 1 1 1/2 1 2 AE 4 I 1 1/2 1/2 1 1 1/2 1 1 1 AAP I 1 1 1/2 1/2 1/3 1/3 1/3 1/3 1/1 I AAP 2 1 I 1 l 1 1 1 1 1 1 8E-2 1 2 0 1/2 1/2 0 0 i 0 2 1/2 8E-2 2 2 2 1/2 1/2 2 2 1/2 1/2 0 1/2 BE-Z 3 1/2 2 1 2 1/2 1/2 1/2 2 1/2 2 BE-2 4 2 1 1/2 1/2 1 0 i 2 0 2 BE-Z 5 1 1 0 1/2 1 1 0 1 I 1 BE-2 6 1 l 1 1 l 1 l 1 l 1 GDH 1 1 0 0 1 l 1 1 1 1 1 GDH 2 1/2 1 l 1 1 1/2 1/2 1/2 1/2 1/2 HK 2 2 1 1/2 2 2 1/2 2 2 2 B-HBDH 2 0 0 0 2 0 2 1 2 I/2 ICD l 0 1 1/3 1 2 3 1 2 I LDH 0 0 1/2 1/2 0 0 0 i 0 0 LAP 1/2 1/2 2 2 1/2 1/2 1/2 1/2 1/2 1/2 ME 1 I 1 1/2 1 1 1/2 1 i l PGM 1 1 0 1/2 1/2 1 1 1/2 0 i 0 PGM 2 1 I 1 l 1 1 l 1 1 1 6-PGD l 0 0 l 0 0 2 0 0 0 PE 1 1/2 1/2 1/2 3 1/2 2 2 1 1/2 1/2 PE 2 1/3 1/3 2 2 1/3 1/3 1/3 3 1/3 3 PE 3 1/3 1/3 2/3 2/3 1/3 1/3 2/3 2/3 1/3 2/3 500 1 2 2/3 1/3 1/3 2/3 2/3 1/3 2/3 2/3 2/3 500 2 2 1/2 1/3 0 2 1/2 1/3 1/2 2 1/2 LTD 1 1/2 1/2 1/2 2 1/2 1/2 1/2 1/2 1/2 0 LTD 2 I l 1 i 1 1 1 1 l 1 3 Abbreviations represent the loci coding for the various enzymes. the numbers representing multiple forms of the enzyme. Alleles are numbered from the most anode to the most cathod. Homozygotes are designated by one and heterozygotes by two numbers; 0 represents a null allele. TABLE x111. Site c (1987). Nei’s genetic distances.8 31 Clonal isolates 1 2 3 4 5 6 7 8 9 10 l - 0.416 0.621 0.571 0.178 0.298 0.487 0.380 0.243 0.294 2 - 0.475 0.629 0.241 0.243 0.522 0.322 0.431 0.351 3 - 0.394 0.543 0.570 0.434 0.562 0.693 0.620 4 - 0.650 0.660 0.534 0.570 0.773 0.589 5 - 0.184 0.398 0.316 0.210 0.345 6 - 0.456 0.379 0.174 0.411 7 - 0.638 0.491 0.520 8 - 0.459 0.158 9 - 0.395 10 - a Null alleles included. 32 TABLE x1v. Statistics for genetic distance (1986) a Site Mean genetic distance 1_SD A 0.4213 1 0.151 8 0.5084 1 0.199 C 0.4522 1 0.208 One-way ANOVA : (for site A. B and C) d.F. M.$. Among 2 0.0729 Within 132 0.0340 F = 2.144 (NS) aAbbreviations : 50. standard deviation; ANOVA. analysis of variance: d.f.. degree of freedom: M.S.. mean square: F. F-test: NS. not significant at the 0.05 level. 33 TABLE XV. Statistics for genentic distance (1987) a Site Mean genetic distance 1 SD A 0.4764 1 0.209 8 0.4644 1 0.168 C 0.4406 1 0.157 One-way ANOVA : (for site A. B and C) dOfO ".8. Among 2 0.0151 Within 132 0.0323 F a 0.4675 (NS) aAbbreviations : 50. standard deviation: ANOVA. analysis of variance: d.f.. degrees of freedom; M.S.. mean square: F. F-test; NS. not significant at the 0.05 level. 34 TABLE xvi. Two-way ANOVA a Source of variation df M.S. F Site 2 MSI=0.0452 MSI/MS4=1.3373 NS Year 1 M52=1.9818E-06 MSZ/MS4=I E-04 NS Site x Year 2 MS3=0.0573 MSB/MS4=I.6953 NS Experiment error 264 MS4=0.0338 a Abbreviations: ANOVA. analysis of variance: df. degree of freedom; M.S.. mean square; F. F-test; NS. not significant at the 0.05 level. 3S IIonozygote Heterozygote Ibnozygote - III-II IIIIII Monomer IIIIIII iii-III — - Dimer III-III — —— —— - Trimer """' _ _ — —-— _ — Tetramer 'l'l'l' _ - —— Fig.1. Diagram of characteristic isozyme patterns expected in heterozygotes in the case of enzymes which are nononérs. diners. tricners or tetraners. The activities of the isozymes formed in heterozygotes are 1:1 for monomers. 1:2:1 for diners. 1:3:3zl for triners. 1:4:6:4:1 for tetramers and so on. (from re£.10) 36 APPENDIX The Nei’s standard genetic distance between two populations X and Y is : D = -Logel. where I is the noramlized identity of genes between X and Y with repect to all loci. 1 = ny / Jny. Let x‘ and y‘ be the frequencies of the ith alleles in X and Y. respectively. The probability 2 in of identity of two randomly chosen genes is Jx={;x' population X. while it is Jy=£y'2 in pOpulation Y. The probability of identity of two genes. chosen at random. one from each of the populations. is nye‘z_x'y'; then designate Jx. Jy and ny the arithmetric means if Jx' J and ny over Y all loci. including monomorphic ones. respectively. if we have the gene frequencies from both populations. the genetic distance between these two populations can be calculated. If populations X and Y have the same genefrequencies. then i = 1. D = 0: if X and Y don't have the same gene frequencies. then I = 0. D =00. "lllllilllllliililllli