MSU RETURNING MATERIALfiS: Place in book drop to LJBRARJES remove this checkout from n. your record. FINES will be charged if book is returned after the date stamped be10w. _ (3"5953- C3Co a. .‘ '. 4 ‘~ ‘i' r- ‘0 ‘1‘; .‘ ,1 ill " -' 3;; JUN 2 3 2012 d" . THE BIOCHEMICAL GENETICS OF HOST RACE FORMATION AND SYMPATRIC SPECIATION IN RHAGOLET IS POM ONELLA (DIPTERA: TEPHRITIDAE) Jeffrey Lee Feder A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Department of Zoology 1989 545 4(033 ABSTRACT THE BIOCHEMICAL GENETICS OF HOST RACE FORMATION AND SPECIATION FOR RHAGOLET IS POMONELLA By Jeffrey Lee Feder The allopatric separation of populations is widely thought to be a prerequisite for speciation in animals. However, true fruit flies in the Rhagoletis pomonella (Walsh) sibling species group have been proposed to speciate sympatrically (that is, in the absence of geographic isolation) as a consequence of shifting and adapting to new host plants. The recent shift of the species R. pomonella from its native host hawthom (Crataegus mollis Scheele) to introduced domestic apple (Malus pumila Mill) provides a test of whether host specialization is sufficient to differentiate fly populations without geographic barriers to gene flow. A test of the sympatric speciation hypothesis was conducted by examining hawthorn and apple infesting populations of R. pomonella for evidence of genetic differentiation using the technique of starch gel electrophoresis. Six allozyme loci (Mali c enzyme, Aconitase-Z, Mannose phosphate isomerase, NADH-diaphorase-Z, Aspartate aminotransferase-Z and Hydroxyacid dehyrodenase) consistently showed significant allele frequency differences at paired apple and hawthorn sites across the eastern United States. These six loci mapped to three different regions of the genome and linkage disequilibrium was observed between non-allelic genes within each region. Allele frequencies for five of the six loci displaying host associated differences also co-varied significantly with latitude. Inter-host genetic differentiation is therefore superimposed on clinal patterns of variation within the host races such that the magnitude of host associated divergence is a frmction of latitude. In addition, the allozyme studies suggested that ambient temperature is an important environmental parameter influencing host-parasite interactions for R. pomonella as allele frequencies for Malic enzyme and Aconitase-Z for hawthorn flies correlated closely with the configuration of irregular iso-thermal clines in Michigan and Wisconsin. Further support for the temperature/development hypothesis came from the fact that frequency clines for both host races were steepest across three regions in the Midwest that corresponded with major ecological transition zones. The results from this Dissertation therefore confirm that partially reproductively isolated "host races" can rapidly evolve in sympatry and implicate differences in host recognition and host associated development (related to ambient temperature) as key traits restricting gene flow between hawthorn and apple populations. Dedication This Dissertation is dedicated to Benjamin Walsh, the father of sympatric speciation for phytophagous insects. Also to my family and to Emma Wang for their long-standing support, encouragement and love, without which I would not have been able to complete this study. iv Acknowledgments I would like to thank my major professor Dr. Guy L. Bush for stimulating my interest in evolutionary biology and for involving me in research on Rhagoletis fruit flies. Special mention must also be made for my Doctoral committee consisting of Dr. Donald 0. Straney, Dr. Thomas Friedman, Dr. Wes Brown and Dr. J. Mark Scriber for having the patience to allow me to mature and develop as a research scientist and person. Charley Chilcote and Dan Howard played key roles in perfecting the electrophoretic techniques and discussing the experimental strategies which were used in this Dissertation. I would also like to thank Scot M. Williams, Stewart H. Berlocher and Bruce A. McPheron for reading and making useful comments on an earlier draft of this Dissertation. Jill Millett, Bruce RJ. Angus MacMillan, Tim A. "Slim" Hunt, Miss Anne Wertheirner, ' Kristy Placido, Jo Ann Palma, Sue Jamrog, Angel Lake, James Edward Zablotny ("Z"), Todd Bierbaum, Scot "Phineas" Williams, Matthew D.B. Liebold, Syd Hess, Sue Bourbeau, and Don Swiderski assisted in numerous aspects of the study including fly collecting, fly rearing and gel running. Ron Prokopy and Sylvia S. Cooley kindly supplied me with flies from Massachusetts, Stewart H. Berlocher, Bruce A. McPheron and D. Courtney Smith with flies from Illinois, Ann L. Averill and Harvey Reissig with flies from New York and Willis Neilson with flies from Canada. Bruce S. Weir provided me with useful information on F-statistics and linkage analysis. Fred Numberger, Doug Clark, Wayne M. Wendland and Ken Scheeringa were gracious in giving me access to weather station data from the states of Michigan, Wisconsin, Illinois and Indiana, respectively. I would also like to thank Ed and Jim Hansen and Mr. & Mrs. Melvin Turner for the use of their land. Suzanne Tolin, Angela Sorrells and Lynda Belisle lent much appreciated secretarial help. I am also grateful to Karen Cebra for drawing Figures 1, 2, 3, 5, and 9. Dorie Bush played a critical part in assuring that I never lacked for nutritional fortitude or friendly banter. Have I missed anybody? If so, thanks. Finally, a small but special honorable mention must also go to incipient Dr. Ronald W. DeBry for finishing his dissertation on schedule with mine. vi Table of Contents List of Tables ................................................................................ xi List of Figures .............................................................................. xix Introduction .................................................................................. 1 Modes of Speciation ............................................................... 1 Allopatric Models of Speciation ................................................ 2 Sympatric Models of Speciation ................................................ 5 Summary of Similarities and Differences between Sympatric and Allopatric Modes of Speciation .......................................... 8 Rhagoletis pomonella as a Model System of Host Race Formation and Sympatric Speciation ......................................................... 9 Starch Gel Electrophoresis of Soluble Proteins ........................... 11 Life History of R. pomonella ................................................... 12 F-statistics for the Analysis of Population Structure ................... 12 vii Organization of the Body of the Thesis ...................................... 13 Chapter 1 Inheritance and Linkage Relationships for Allozymes in Rhagoletis pomonella ............................................. 15 Introduction ......................................................................... 15 Materials and Methods ........................................................... 16 Crossing of R. pomonella ............................................. 16 Electrophoretic Methods ............................................. 17 Genetic Nomenclature ................................................. 19 Calculation of Linkage Disequilibrium ............................ 19 Results and Discussion ............................................................ 22 Segregation Studies ...................................................... 22 Linkage Results ........................................................... 25 Linkage Disequilibrium and Genetic Variation in the Laboratory Stock ........................................................ 31 Analysis of Disequilibrium between Laboratory and Natural Populations ................................................... 36 Chapter 2 Genetic Differentiation between Sympatric Host Races of the Apple Maggot Fly, Rhagoletis pomonella ............ 40 Introduction ........................................................................ 40 Materials and Methods ........................................................... 41 Results ................................................................................ 41 Discussion ............................................................................ 50 Chapter 3 The Geographic Pattern of Genetic Differentiation between Host Races of Rhagoletis pomonella ................... 54 Introduction .......................................................................... 54 Materials and Methods ............................................................ 60 Results .................................................................................. 60 Discussion ............................................................................. 82 Chapter 4 Gene Frequency Clines for Rhagoletis pomonella Host Races in the mid-Westem United States .................. 107 Introduction ........... V .............................................................. 107 Materials and Methods ........................................................... 111 Results ................................................................................. 1 17 Discussion ........................................................................... 138 Chapter 5 Local and Microgeographic Genetic Variation between Host Races of Rhagoletis pomonella ............................. 161 Introduction ......................................................................... 161 ix Results .............................................................................. 170 Acon-Z ................................................................... 170 Me and Mpi ............................................................ 177 Act-2 and Did-2 ........................................................ 182 Had ...................................................................... 1 84 Discussion .......................................................................... 184 Chapter 6 Concluding Summary and Remarks ............................ 200 List of References ....................................................................... 207 Table 1. Table 2. Table 3. Table 4. Table 5. List of Tables Enzyme systems resolved for the laboratory strain of R. pomonella. Isozymes that migrated nearest to the cathode were designated 1, the second nearest 2, etc. ...................... 18 Null hypotheses (HI-H4) concerning tests of linkage disequilibrium within gametes (Dw) and between united gametes (Db). ............................................................... 21 Segregation results from test crosses for six newly resolved allozymes for the apple maggot. Data for Aat-I are given separately according to sex (F=female, M=ma1e). The number of test crosses pooled for each cross type is given in parentheses following the numerical designation for the cross type. .......................................................... 23 Map distances (in centimorgans) calculated between loci from single pair crosses. ................................................. 29 Linkage disequilibrium between pairs of non-allelic genes in the laboratory stock of R. pomonella. Results are given for disequilibrium within gametes (Dw), between united gametes (D1,) and for a composite measure of Dw and D1, (A, Burrows value). See Table 6 for explanations of test hypotheses H1-H4. ...................................................... 32 xi Table 6. Table 7. Table 8. Table 9. Table 10. Table 11. Table 12. Table 13. Observed and expected heterozygosity and the presumed number of alleles lost in the laboratory stock compared to natural apple maggot populations. ................................. 34 Correlation coefficients calculated between pairs of non- allelic genes for the laboratory stock and a natural apple fly population collected from Grant, Michigan. ...................... 37 Allozymes resolved for the host races of R. pomonella. Enzyme abbreviations are given in parentheses. Isozymes that migrated the nearest to the cathode are designated system 1, the second nearest 2, etc. ................................ 44 Allele frequencies for Me, Acon-Z, Mpi, Aat-Z, Did-2 and Had for flies collected from hawthorn and apple trees at the Grant,Michigan study site. n = sample size. ...................... 46 G-contingency tests for allele frequency differences for Me, Acon-Z, Mpi, Aat-Z, Did-2 and Had at the Grant, Michigan site. Degrees of freedom are given in parentheses. ................................................................ 47 Correlation coefficients (rAB) calculated between pairs of non-allelic genes based upon disequilibrium values. .......... 49 Collecting sites for R. pomonella across the eastern United States and Canada. A=apple, H=hawthorn, sym = paired site where hawthorn and apple trees sampled were within 100 meters or less of one another. ................................ 61 G-contingency tests for allele frequency heterogeneity at paired sites between hawthom and apple infesting populations of R. pomonella. Degrees of freedom for tests are given in parentheses. .................................... 65 xii Table 14. Table 15. Table 16. Table 17. Table 18. Table 19. Table 20. Table 21. Table 22. G-contingency tests for intra-host allele frequency heterogeneity across years and sites. Degrees of freedom for tests are given in parentheses. ................................. FST values across years for apple and hawthorn populations at site 1 (Ephraim, Wisconsin). ...................... FST values across years for apple and hawthorn populations at site 5 (Grant, Michigan). ........................... Fs'r values across apple and hawthorn populations calculated by the method of Weir and Cockerham (1984). 66 67 68 Negative Fs'r values are reported as 0.0000. .................... 70 Results of linear regression analysis of arcsin transformed allele frequencies and latitude across the 10 paired apple and hawthorn sites. r2=explained genetic variation. Asterisk(s) denote significant deviations of regression coefficients (i.e., slopes of regression lines) from 0. ...................................................................... Correlation coefficients between non-allelic genes (Cockerham and Weir, 1977) for apple populations across the eastern United States and Canada. ........................... Correlation coefficients between non-allelic genes (Cockerham and Weir,l977) for hawthorn populations across the eastern United States and Canada. ...................... Allele frequencies for Me and Had for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. ........................................... Allele frequencies for Acon-Z for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United 73 80 States and Canada. ...................................................... 96 Table 23. Table 24. Table 25. Table 26. Table 27. Table 28. Table 29. Table 30. Table 31. Allele frequencies for Mpi for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. ..................................................... 97 Allele frequencies for Aat-Z and Did-2 for hawthorn (H) populations of R. pomonella across the eastern United States and Canada. ..................................................... 98 Allele frequencies for Act-2 and Did-2 for apple (A) populations of R. pomonella across the eastern United States and Canada. ..................................................... 99 Allele frequencies for Pep-2 for hawthom (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. .................................................... 100 Allele frequencies for Aat-I for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. .................................................... 101 Allele frequencies for Pgi for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. .................................................... 102 Allele frequencies for Pgm for hawthorn (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. .................................................... 103 Allele frequencies for Acy for hawthom (H) and apple (A) populations of R. pomonella across the eastern United States and Canada. .................................................... 104 Allele frequencies for Idh for hawthom (H) and apple (A) populations of R. pomonella across the eastem United States and Canada. .................................................... 105 xiv Table 32. Table 33. Table 34. Table 35. Table 36. Table 37. Allele frequencies for Ak for hawthorn (H) and apple (A) populations of R. pomonella across the eastem United States and Canada. .................................................... 106 Numerical designations and descriptions of field sites. Sites were generally organized into five latitudinal transects (see Figure 5 and Table 34). Latitude and growing degree days base 50°F are also given for sites. ...................................................................... 1 14 G-contingency tests for allele frequency heterogeneity between paired apple and hawthom populations. Degrees of freedom for tests involving each locus are given in parentheses following locus abbreviations. At site 15 both adults (Ad) and larvae (L) were tested for inter-host variation. .................................................................. 1 l8 G-contingency tests for allele frequency heterogeneity among apple and hawthorn populations along five latitudinal transects in the midwestern United States. ........ 121 F57 values (Weir and Cockerham, 1984) across the 28 paired apple and hawthorn populations analyzed in the study. R refers to the PST value calculated by pooling all alleles remaining for a locus besides those listed in the table. .................................................................... 122 First order linear regression analyses between arcsin transformed allele frequencies and either latitude or growing degree days base 50°F (GDD) for apple populations along either Michigan/Indiana or Wisconsirr/lllinois transects. r2 = amount of genetic variation explained by the linear regression. ................... 124 XV Table 38. Table 39. Table 40. Table 41. Table 42. First order linear regression analyses between arcsin transformed allele frequencies and either latitude or growing degree days base 50°F (GDD) for hawthorn populations along either Michigan/Indiana or Wisconsin/Illinois transects. r2 = amount of genetic variation explained by the linear regression. ................... 125 Allele frequencies for Acon-Z for hawthorn (H) and apple (A) populations of R. pomonella across the mid-westem United States. At sites 4, 15 and 17 where both larvae and adults were collected, (L) refers to larvae and (Ad) to adults. Sites are arranged within the five transects according to latitude from north to south. .................... 151 Allele frequencies for Me, Had and Did-2 for hawthom (H) and apple (A) populations of R. pomonella across the mid- westem United States. At sites 4, 15 and 17 where both adults and larvae were collected, (L) refers to larvae and (Ad) to adults. Sites are arranged within transects according to latitude from north to south. .................... 153 Allele frequencies for Mpi for hawthorn (H) and apple (A) populations of R. pomonella across the mid-westem United States. At sites 4, 15 and 17 where both adults and larvae were collected, (L) refers to larvae and (Ad) to adults. Sites are arranged within transects according to latitude from north to south. .................................................... 155 Allele frequencies for Aat-Z for hawthorn (H) pOpulations of R. pomonella across the mid-westem United States. At sites 4, 15 and 17 where both larvae and adults were collected, (L) refers to larvae and (Ad) to adults. Sites are ananged within the five transects according to latitude from north to south. .................................................... 157 xvi Table 43. Table 44. Table 45. Table 46. Table 47. Table 48. Table 49. Table 50. Allele frequencies for Act-2 for apple (A) populations of R. pomonella across the mid-westem United States. At sites 4, 15 and 17 where both larvae and adults were collected, (L) refers to larvae and (Ad) to adults. Sites are arranged within the five transects according to latitude from north to south. .................................................... 159 G-contingency tests for intra- and inter-host allele frequency heterogeneity at site B. ............................... 171 G-contingency tests for intra-host allele frequency heterogeneity across years at site B and among local apple (A) and hawthorn (H) populations. Degrees of freedom for tests are given in parentheses. ..................... 173 Fs'r values calculated by the method of Weir and Cockerham (1984) across years for apple and hawthorn trees at site B. ............................................................... 174 Distribution of f values (2 F13 of Wright, 1951) for individual populations calculated by the method of Barker, East and Weir (1986). The number of f values significantly greater or less than 0 are given in parentheses. ............................................................... 176 PM values for local apple and hawthorn populations calculated by the method of Weir and Cockerham (1984).... 178 Fs'r values for hawthorn and apple trees at site E in 1985 and 1987 calculated by the method of Weir and Cockerham (1984). .................................................................... 179 Allele frequencies for Me, Acon-Z and Mpi for individual apple (A) trees collected at site B from 1984 to 1987. See Figure 9c for a diagram of site B which includes apple tree designations. N = sample size. ............................... 194 xvii Table 51 . Table 52. Table 53. Table 54. Table 55. Allele frequencies for Me, Acon-Z and Mpi for individual hawthorn (H) trees collected at site E from 1984 to 1987. See Figure 90 for a diagram of site B which includes hawthorn tree designations. N = sample size. ............... 195 Allele frequencies for Did-2, Ant-2 and Had for individual apple (A) trees collected at site B from 1984 to 1987. See Figure 9c for a diagram of site E which includes apple tree designations. N = sample size. ..................... 196 Allele frequencies for Did-2, Aat-Z and Had for individual hawthorn (H) trees collected at site B from 1984 to 1987. See Figure 9c for a diagram of site B which includes hawthorn tree designations. N = sample size. ................ 197 Allele frequencies for Me, Acon-Z and Mpi for local apple (A) and hawthorn (H) populations. See Figure 9a,b for study site designations. N = sample size. ........................ 198 Allele frequencies for Did-2, Aat-Z and Had for local apple (A) and hawthonr (H) populations. See Figure 9a,b for study site designations. N = sample size. ........................ 199 xviii Figure 1. Figure 2. Figure 3. List of Figures Linkage group assignments and map distances (in centimorgans) between loci for R. pomonella. Assignments and distances given in parentheses are based on data from Berlocher and Smith (1983) ...................... 27 Scale diagram of study site located near the town of Grant, in western Michigan. The site is an old field which has remained fallow since at least 1922 (E. Hansen, pers. comm.) Host tree designations (A=apple, H=hawthorn) are given along with collecting dates and inter-tree distances (in meters). ...................................................... 43 Collecting sites for R. pomonella across the eastern United States and Canada (see Table 12 for descriptions of study sites). Dotted portion of map designates the region where flies were that observed attacking apples. Dotted and shaded areas encompass the distribution of apple flies when the first published report of the race was made by Ward (1866). Years are given for the first observation of the apple race in a region. The current distributions of the apple and hawthorn races are indicated by the solid and dashed lines, respectively. Figure 1 is a modification of Figure 3 from Bush (1969a). ........................................... 57 xix Figure 4. Figure 5. Figure 6. Average arcsin transformed allele frequency for M e1 00 , Acon-295 ,Mpi37, Die-2100 and Had100 for paired apple and hawthorn sites plotted against latitude. Site 8 (Kenton, Ohio) is not included because data for Dia-2100 are missing for this site. The linear regression equation is given along with the amount of explained variation (r2) and probability levels (13) for the AN OVA F-test of the null hypothesis that the slope of the regression line = 0. ........... 75 Collecting sites for R. pomonella in the midwestem United States (see Table 33 for detailed descriptions of study sites). Solid lines indicate isothermal Clines for growing degree days base 50°F (GDD). GDD values for Illinois and Indiana sites are given in parentheses. Dashed lines connect sites comprising each of the five latitudinal transects collected in the study. 0: site where the frequency of Acon-275 was > 0.100 for either apple or hawthorn flies. 0 = site where the frequency of Acon-275 was > 0.100 for both apple and hawthorn flies. A = site where the frequency of Acon-289 was > 0.200 for hawthorn flies and/or > 0.100 for apple flies. .................................... 113 Average arcsin transformed allele frequency for Me] 00, Acon-295, Mpi3 7, [lat-2100, Did-2100 and Had] 00 for apple and hawthom populations along Michigan/Indiana and Wisconsin/Illinois transects plotted against growing degree days base 50°F. The first order linear regression equations are given for apple and hawthorn flies along with r2 values (the amount of genetic variation explained by the regression equation) and the probability level (P) for the AN OVA F-test of the null hypothesis that the slope of the regression line = 0. .................................................... 128 XX Figure 7. Figure 8. Figure 9. Allele frequencies for M e1 00, Acon-295 and Mpi3 7 for apple and hawthorn populations along transect 1 (Michigan/Indiana) and transect 4 (W isconsin/lllinois). Sites are arranged by decreasing latitude from left to right along the x-axis. Site 10 is included as the northern most site for transect 1. .................................................... 131 Allele frequencies for [lat-2100, Did-2100 and Had] 00 for apple and hawthorn populations along transect 1 (Michigan/Indiana) and transect 4 (W isconsin/Illinois). Sites are ananged by decreasing latitude from left to right along the x-axis. SitelO is included as the northern most site for transect l. .................................................... 133 Collecting sites for R. pomonella in western Michigan. Panel b is a diagram of local populations sampled within a 60 km2 area near the town of Grant, Michigan. 0 = apple tree, A = hawthorn tree. Panel c gives the distribution of apple and hawthorn trees at site B. A=apple, H=hawthom. ............................................... 167 xxi Introduction "In dim outline evolution is evident enough. But that particular and essential bit of the theory of evolution which is concerned with the origin and nature of species remains utterly mysterious." William Bateson 1922 Evolutionary faith and modern doubts Science 55 :55-61 . Modes of Speciation Although written almost 70 years ago Bateson's statement is still largely valid today. Empirically demonstrating the mechanistic basis for speciation (the cladistic splitting of evolutionary lineages in sexually reproducing organisms) remains one of the most difficult tasks facing evolutionary biologists. As enumerated by MJ.D. White (1978), a fully documented history of speciation must include: 1.) A precise map of the present geographic distributions of taxa. 2.) Geological and climatological evidence suggesting past distributions. 3.) A detailed morphological description of the taxa. 4.) Ecological data on preferred habitats and the life history of the organisms including information on any daily, seasonal or 1 yearly cycles. 5.) Behavioral information regarding any etlrological isolating mechanisms or habitat selection for the taxa. 6.) A detailed genetic description of the taxa based on cytological, biochemical and molecular data. 7.) An extensive study of morphological and genetic geographic variation. 8.) Results of experimental hybridization studies in the laboratory. 9.) Information on the frequency of hybridization in nature, provided of course, that the taxa co-occur in at least some portion of their respective ranges. Allopatric Models of Speciation Needless to say there is no example of speciation for which all of this information is available. As a result, much attention has been focused on the theoretical basis for speciation. The traditional view of speciation first advanced by Wagner (1868, 1889) and later more clearly defined by Jordan (1896) requires the complete geographic separation (allopatry) of con- specific populations as a pre-requisite for divergence. This classic "dumbbell" model of speciation (Mayr, 1942) involves three different stages. 1.) The range expansion of a population into a new area. 2.) The development of a geographic barrier between the two areas. 3.) The evolution of genetic modifications within populations in the two areas such that when the populations again come into contact they will be kept apart by genetic isolating mechanisms. The emphasis on the need for the complete 3 geographic isolation of populations stems from the view that the genome is a highly integrated genetic system maintained at the status quo by a balance between epistatic interactions among genes and inter-demic gene flow. As stated by Mayr (1963, pp. 518, 521): "The real problem of speciation is not how to produce difference but rather how to escape from the cohesion of the gene complex. No one will comprehend how formidable this problem is who does not understand the power of the cohesive forces that are responsible for the coadapted harmony of the gene pool ...... The importance of complete isolation becomes evident as soon as the extensive epistatic effects of genes are properly taken into consideration. As a consequence, a population cannot change drastically as long as it is exposed to the normalizing effects of gene flow." As a consequence, Mayr (1963, pg. 525) believes that " genetic differences between populations are built up not by the independent changes of gene frequencies at different loci, but by the harmonious restructuring of the total genotype." Speciation is therefore the process whereby reproductive isolation develops between populations as a by product of the breakdown and restructuring of the genetic system within geographically isolated demes experiencing different selection pressures. "As soon as they are separated, two populations will drift apart in their genetic contents for a number of reasons. The probability is nil that the same mutations will occur in the two populations in the same sequence. Each incorporated mutation changes the genetic background of the population and thus affects the selective value of all subsequent mutations. Furthermore, recombination will produce different genotypes in the two gene pools, and, since the same gene may have different selective values in different genotypes, this will likewise lead to a gradual shifting of gene frequencies ...... The selective agents to which the two separated populations are exposed are also not the same, since there are no two places on the face of the earth where even the physical 4 environment is quite identical. Where a population is completely isolated , the composition of the biota is invariably different and this shift of the biotic environment results in an additional powerful difference in selection pressure. This is true for competition, predation, and whatever other ecological interactions may exist. These local conditions exert selection pressures leading to a steady change of gene contents and to the development of numerous new adjustments. Having to become adapted to a new environment may lead to a sufficiently drastic genetic reconstruction to affect the nature of isolating mechanisms, including potential sterility barriers with sister populations." E. Mayr (1963, pp. 527,528) An important aspect of the classic "dumbbell" model is that population sizes are assumed to be large during all stages of speciation. Consequently, the evolution of genetic isolating mechanisms between allopatric populations is a slow and gradual process. However, range expansions of populations during stage 1 of allopatric speciation may involve only a few colonists. This consideration and earlier theoretical work by Wright (1940a,b), led Mayr (1942) to propose an auxillary form of allopatric speciation based on the "founder principle" in which a new isolate formed by only a few individuals could rapidly undergo the genetic turnover necessary for speciation. As discussed by Mayr (1942, 1954, 1963): "The founder population differs from the parental population not only in the drastic reduction of the diversity of its gene pool, but also by being exposed to a totally new constellation of environmental factors, biotic as well as genetic ones. The most important of these is the sudden conversion from an open to a closed-and at that a small closed-population ...... After conversion of the population into a closed one, homozygosity increases inevitably ...... and as a consequence of their increased frequency in the founder population, homozygotes will be much more exposed to selection and those genes will be favored which are specially 5 viable in homozygous condition. Thus the soloist is now the favorite, rather than the good mixer. We come thus to the important conclusion that the mere change of the genetic environment may change the selective value of a gene very considerably (and particularly the change from an open to a closed population). This change, in fact, is the most drastic genetic change (except for polyploidy and hybridization) which may occur in a natural population, since it may affect all loci at once. Indeed, it may have the character of a veritable genetic revolution. Furthermore, this genetic revolution, released by the isolation of the founder population, may well have the character of a chain reaction. Changes in any locus will in turn affect the selective value at many other loci, until finally the system has reached a new state of equilibrium ...... Therefore, during a genetic revolution, the population will pass from one well integrated and stable condition through a highly unstable period to another period of balanced integration ...... I use the term genetic revolution advisedly, because the genetic reconstitution was in all these cases far too drastic to be described in terms of a change of gene frequencies. Surely, a change of gene frequencies also occurred, but it was associated with a sufficiently drastic replacement of supergenes that it resulted in the acquisition of a new epigenotype." Carson (1959, 1965, 1968, 1971) has further developed Mayr's idea by suggesting that a series of sudden population increases ("flushes") and decreases ("crashes") greatly enhances the probability of speciation by the founder principle (although in retrospect, Carson's ideas on the founder- flush hypothesis can also be directly traced back to Wright, 1940a,b). Sympatric Models of Speciation Although there are few doubts about the reath of allopatric speciation, questions have been raised over the universality of geographic isolation as a pre-requisite for speciation in sexually reproducing animals and about the genetic basis underlying the speciation process (Fisher, 1930; Lewis, 1962, 1966; Bazykin, 1965, 1969; Maynard—Smith, 1966; Bush, 6 1966, 1969a,b, 1975a; White, 1968, 1978; Murray, 1972; Endler, 1977; Templeton, 1981). One non-allopatric mode of speciation which has gained considerable attention is termed "sympatric speciation" and is based on the premise that populations can diverge as a consequence of adapting to different ecological niches or habitats which co-occur within the same geographic area. Sympatric models of speciation owe their origin to Benjamin Walsh (1864, 1867) who, five years after Darwin (1859) published "0n the Origins of Species", postulated that reproductive isolation among certain species of phytophagous insects was the result of these insects sympatrically shifting and adapting to new host plants. Mathematical models of sympatric speciation can be traced back to Maynard Smith's (1966) application of the work of Levene (1953) on the effects of selection in heterogeneous environments to the question of population divergence. The possibility of sympatric speciation has been criticized by Mayr (1963, pp. 451,452, 527) who has stated that: "There is no evidence to support the notion of ecological races as a category distinct from that of geographical races. A theory of ecological speciation would have to prove that a population of a species established itself in a new kind of habitat within the cruising range of individuals of the parental populations and merely by conditioning and habitat selection segregated itself in the new habitat until it had reached species level ...... Since there are normally very numerous ecological niches within the dispersal area of a deme, niche specialization is impossible without continued new pollution in every generation by migrants ..... Contiguous populations of a species are therefore held together by such a close tie of genetic cohesion that it is impossible to divide this essentially single gene pool into two. There is no mechanism (except for instantaneous speciation through polyploidy) by which the cohesion might be loosened to the extent that it would permit the sympatric development of two independent gene complexes which would give 7 reproductive isolation and ecological compatibility." Nevertheless, during the century following publication of Walsh's theory, several putative cases of host shifts supporting a sympatric mode of divergence have appeared in the literature (Brues, 1924; Thorpe, 1930; Smith, 1941; Bush, 1966; see review by Diehl and Bush, 1984). Perhaps the most well known example is that for certain species groups of true fruit flies in the genus Rhagolen's (Diptera: Tephritidae). Because Rhagoletis larvae are highly specific, internal frugivorous parasites of their host plants and mate selection in these flies is directly coupled to host selection, Bush (1966, 1969a,b, 1975a) has argued that variation for traits related to host recognition and host associated survivorship could act as premating barriers to gene flow and result in the sympatric divergence of fly populations specialized on different host plants. Bush (1969a,b; 19753) contends that Mayr has overlooked some critical points with regard to sympatric speciation and the genetics of speciation. First, Mayr neglects to distinguish between migration and effective gene flow. Individuals occupying different habitats are likely to be under different selection pressures. Therefore, although migration may occur between con-specific populations occupying different habitats, effective levels of gene flow may still be quite low due to selection acting against immigrants entering a niche to which they are not well adapted. Second, mating in many phytophagous insects and parasites occurs only within preferred habitats. Such organisms therefore have mating systems which are inherently biased toward the development of positive assortative mating following a habitat or host shift. Consequently, any trait conferring differential habitat usage simultaneously produces a pre-mating isolating 8 barrier which further reduces inter-demic gene flow. Third, genomes are not necessarily highly "co-adapted gene complexes" and speciation may not require or be initiated by a " genetic revolution". For instance, although traits related to host recognition are undoubtedly polygenetic (J aenike, 1987) changes in just a few genes or even a single locus could have major effects on proper host identification (Huettle and Bush, 1972; Carson and Ohta, 1981; Thompson 1988). Populations in which mating is confined to specific habitats could therefore diverge rapidly due to fixation of alternative allelic variants at only a limited number of key polymorphic loci controlling habitat choice. Summary of Similarities and Differences between Sympatric and Allopatric Modes of Speciation Perhaps it would be good to digress for a moment to summarize and further clarify the debate concerning the geographic context of speciation. As written by Mayr (1963, pg. 451,453): "Theories of sympatric and geographic speciation agree in their emphasis on the importance of ecological factors in speciation. They differ in the sequence in which the steps of the speciation process follow each other. The theory of geographic speciation lets an extrinsic event separate the single into several gene pools, with the ecological factors playing their major role after the populations have become geographically separated. According to the theory of sympatric speciation the splitting of the gene pool itself is caused by ecological factors, and whatever spatial isolation of the thus formed populations ensues is a secondary, later phenomenon ...... The question to be solved, then, is whether there are any natural phenomena known that can be interpreted as cases of incipient species in a process of sympatric speciation. The complex of phenomena usually labeled biological races has indeed been cited as evidence for such sympatric speciation and must therefore be studied carefully". Or as succinctly stated by Maynard Smith (1966): "The crucial step in sympatric speciation is the establishment of a stable polymorphism in a heterogeneous environment. Whether this paper is regarded as an argument for or against sympatric speciation will depend on how likely such a polymorphism is thought to be, and this in turn depends on whether a single gene difference can produce selective coefficients large enough to satisfy the necessary conditions." Rhagoletis pomonella as a Model System of Host Race Formation and Sympatric Speciation As mentioned before, the biology and natural history of true fruit flies in the genus Rhagoletis are ideally suited for studies of population divergence and speciation. In particular, members of the R. pomonella sibling species group offer a unique opportunity to directly test various tenants of sympatric speciation theory. Members of the R. pomonella complex are sympatric or broadly parapatric in their geographic distributions across North America (Bush, 1966). The four described and one undescribed species comprising the group are all indigenous to North America and each species attacks a different, non-overlapping set of host plants (Bush, 1966). Although several pairs of R. pomonella group species can be crossed in the laboratory, these species are genetically distinct and rarely hybridize in nature (Bush, 1966; Berlocher and Bush, 1982; Feder et al., in press; Feder and Bush, submitted; Williams et al., manuscript in prep.) Most importantly, the species R. pomonella is actively generating new, sympatric host associated populations (Ward, 1866; Walsh, 1867; Herrick, 1920; Shervis et al., 1970; Prokopy and Bush, 1972; Prokopy and 10 Berlocher, 1980). The most famous and best documented host shift for R. pomonella is that from its native host hawthorn (C rataegus spp.) to introduced, domestic apple (Malus pumila). The known historical timeframe (~150 years ago; see Walsh, 1867; Illingworth, 1912; O'Kane, 1914; Porter, 1928; Bush, 1966) and probable location of the shift (Hudson River Valley, New York) allow a direct analysis of the host specialization process from a context that excludes the possibility of prior geographic isolation between apple and hawthorn infesting populations. Therefore, if behavioral and/or genetic differences exist between hawthorn and apple populations at sympatric field sites, then this would strongly support a sympatric mode of divergence for these flies. The objective of this dissertation is to examine hawthorn and apple infesting forms of R. pomonella for evidence of genetic differentiation. Three general questions will be addressed. First, do genetic differences exist between hawthorn and apple flies and, if so, do these differences indicate that gene flow is restricted between the two host associated populations? In other words, are hawthorn and apple flies partially reproductively isolated 'host races" as predicted by sympatric speciation theory? Second, what is the nature of any observed genetic variation between sympatric apple and hawthorn populations. Is genetic differentiation widespread throughout the genome, as indicative of the "genetic revolution" of Mayr, or are host related differences restricted to allele frequency changes at only a limited number of loci located in specific regions of the genome? Third, what is the geographic pattern of genetic variation for R. pomonella, and does this pattern reveal anything about possible factors differentiating apple and hawthorn populations? Is selection a possibility or is the pattem of intra- and inter-host divergence ll suggestive of stochastic processes such as genetic drift? Starch Gel Electrophoresis of Soluble Proteins Starch gel electrophoresis of soluble proteins forms the basis for the survey of genetic polymorphism in R. pomonella populations. The technique was first used for analyzing genetic variation in natural populations of Drosophila melanogaster by Lewontin and Hubby (1966) and in humans by Harris (1966), and has since become a standard biochemical tool in the study of evolution. In protein gel electrophoresis, an individual is ground in a stabilizing buffer solution and the homo genate is subjected to an electric field in a starch, cellulose acetate or acrylanride gel medium. Protein variants can be distinguished because amino acid substitutions (due to changes in the DNA sequence encoding the protein) can cause net charge or conformational changes in the enzyme which alter its rate of migration in the electric field. Specific histochemical stains are used to visualize the mobilities of a protein or class of proteins in the gel. Mobility differences among or within individuals for the same enzyme system are usually indicative of allelic variation at the locus coding for the protein. Unfortunately, not all genetic variation is detected by starch gel electrophoresis of soluble proteins (Lewontin, 1974). However, studies suggest that the technique does give a fair approximation of the extent of genetic polymorphism in populations (Rarnshaw et al., 1979). In this dissertation, the term allozyme refers to enzyme loci resolved by different histochenrical stains and isozyme refers to differentially migrating enzyme systems which were detected using the same histochemical stain. 12 Life History of R. pomonella Before continuing further, I would like to present some additional remarks on the life history of R. pomonella and on F -statistics which I hope will clarify the subsequent presentation of the data. First, R. pomonella generally has a univoltine life history cycle across its range (Bush, 1966; Dean and Chapman, 1973). Adult females lay their eggs directly into the flesh of the host fruit while the fruit is still on the tree. Eggs hatch within two days and immatures develop through three larval instars over a period of 3-5 weeks. A larvae feeds and completes development only within the single host fruit in which it hatched. After the fruit abscises from the host plant and falls to the ground, late third instar larvae leave the fruit and burrow a few inches into the soil where they pupate after 3-4 days. Flies therefore overwinter as pupae in the soil beneath the tree which they infested as larvae during the preceding summer. Most flies terminate diapause and eclose as adults the next summer, although some pupae require two winters of chilling in the field before completing development (Phipps and Dirks, 1933b). F-statistics for the Analysis of Population Structure F-statistics were invented by Sewall Wright as a method for quantifying population structure with respect to the amount of inbreeding within populations and subpopulations (Wright, 1943, 1951). Wright developed separate inbreeding coefficients for an individual relative to its subpopulation (F13), for an individual with respect to the total population (F11), and for the correlation between randomly chosen gametes within subpopulations relative to the total population (PST). The three inbreeding 13 coefficients are related algebraically by the formula: Fsr = (Frr - Frs) / (1 - Frs) An alternative concept of F-statistics has been developed by Nei (1977) based on characterizing the degree of genetic differentiation among existing populations rather than on inbreeding or coancestry within populations. Nei's method has certain advantages over Wright's in that it does not make explicit assumptions about the nature of factors influencing gene and genotype frequencies. In contrast, mutation, selection and migration are assumed to have minimal effects on the genetic structure of populations under Wright's calculations. However, because of problems related to sampling theory, direct comparisons of Nei's FST values between populations is not always advisable. Since in many instances in this dissertation I use Fs'r values for comparative purposes, I calculated F- statistics using the formulae of Weir and Cockerham (1984); a methodology which retains Wright's original conceptual definition of F - statistics as inbreeding coefficients. Organization of the Body of the Thesis The body of the thesis is organized into six chapters. The first five chapters are presented in scientific format, with each Chapter being subdivided into an introduction, materials and methods, results, and discussion sections. Chapter 6 is a concluding summary. For ease of reference, tables containing large amounts of allele frequency data appear at the end of Chapters 3, 4 and 5 following the discussion sections. Chapter 1 establishes a Mendelian mode of inheritance as well as linkage group associations and relative map positions for 12 different l4 polymorphic allozymes in R. pomonella. Chapter 2 reports the observation of significant allele frequency heterogeneity for allozymes between hawthorn and apple infesting populations of R. pomonella at a sympatric field site in westem Michigan. Chapter 3 addresses the question of geographic variation for apple and hawthorn populations through a survey of allozyme variation across a major portion of R. pomonella's range in eastem North America. Chapters 4 and 5 present a more fine grained analysis of spatial and temporal genetic differentiation between hawthorn and apple host races. Chapter 4 explores the regional pattern of divergence on a county by county basis in the nridwestem United States by analyzing populations along five latitudinal transects which run from Michigan through Indiana and from Wisconsin through Illinois. Chapter 5 dissects the pattenr of local and rrricrogeographic genetic variation within a 60 km2 area surrounding the original study site near the town of Grant, in western Michigan. Chapter 5 therefore assesses whether patterns observed on a broad geographic scale across eastern North America are spatially and temporally consistent on a very fine level down to individual host trees, over years, within an old field. Chapter 6 is a concluding summary which includes some brief comments on my future research plans for the R. pomonella group. Chapter 1 Inheritance and Linkage Relationships for Allozymes in Rhagoletis pomonella Introduction The apple maggot fly, Rhagoletis pomonella (Walsh) (Diptera: Tephritidae) is of economic importance because it is a major pest of domesticated apples throughout North America. Apples (Malus pumila) are not, however, the native host of R. pomonella. Apple populations of the fly are thought to have originated within the past 150 years via one or more host shift(s) from hawthoms (Crataegus spp.; Bush, 1966, 1969a,b, 1975a). The historical context of the shift(s) makes R. pomonella interesting to evolutionary biologists as well as to applied entomologists as a model system for the study of sympatric host race formation and speciation. Our understanding of the population genetics and phylogenetic relationships of R. pomonella and related species has primarily come from starch gel electrophoresis of soluble proteins (Berlocher, 1976; Berlocher and Bush, 1982). Allozymes have also provided genetic markers toward the construction of a linkage map for the apple maggot (Berlocher and Smith, 1983) which is crucial for future research on the genetics of host 15 l6 selection in these flies. The scope of electrophoretic studies has been limited, however, by the number of enzyme loci which can be stained and reliably scored in R. pomonella. The objective of this Chapter is to resolve and characterize new allozyme systems in the apple maggot. Previous studies on a laboratory stock of R. pomonella established a Mendelian mode of inheritance for allozymes at 12 electrophoretic loci (Berlocher, 1980; Berlocher and Smith, 1983). Ten of these loci were subsequently mapped to four different linkage groups. Here, I expand on the original results by verifying a genetic basis for six additional allozymes and determining map positions for five of these loci in the same laboratory fly stock. Linkage disequilibrium is also examined between pairs of non-allelic genes for the laboratory strain and compared to values observed in natural R. pomonella populations. Materials and Methods W In nature, R. pomonella has a univoltine life cycle, spending the winter months in a facultative pupal diapause. For this reason, crosses were performed on a non-diapausing laboratory strain of the apple maggot that has a generation time of approximately three months. The strain originated from an apple population collected near Geneva, New York in the mid 1970's and has gone through approximately 40 generations in the laboratory. Fifty single-pair crosses were started by placing pairs of virgin flies into cages containing Red Delicious apples. The apples were removed from 17 the cages every other day and replaced with fresh apples. After six weeks the crosses were terminated and surviving parents frozen at -80°C until they could be analyzed electrophoretically. F1 progeny were reared to adulthood from the infested apples and also stored at -80°C. In 15 of the original 50 matings parents were frozen alive and crosses produced sufficient progeny (>20) to warrant genetic analysis. Eighteen progeny were initially run from each of these 15 crosses with additional progeny being examined from crosses involving parents with especially informative genotypes. WM Standard starch gel electrophoretic techniques were used (Berlocher and Bush, 1982). Individual flies were sexed and homogenized with a glass rod in 20 pl ofa 0.1 M Tris, 1 mM EDTA, 0.13 mM NADP, 0.15 mM NAD, 0.3 M beta-MeEtOH (pH 7.0) grinding buffer. When possible, parents and their progeny were examined on the same gel to facilitate the correct scoring of allozymes. Gels were made from 11% electrostarch (O. Hiller and Co.) using one of three different buffer systems: system I , 3.7 mM Citric acid, 0.1% v/v N-(30 amino-propylmorpholine)(pH 6.1); system 2, 8 mM Tris, 3 mM Citric acid (pH 6.7); system 3, 76 mM Tris, 5 mM Citric acid (pH 8.7). Electrode nmning buffer for system I was a 10x concentrated form of gel buffer 1, for system 2 was 0.22 M Tris, 86 mM Citric acid (pH 6.3), and for system 3 was 0.3 M Borate (pH 8.2). Gels were sliced and stained for the 11 different enzymes listed in Table 1 along with their abbreviations, enzyme commission numbers and gel buffer systems. 18 £82 62958808 a 3.8%.: * M 3.2 om 8E N 3.0m em 3 m 33% Om 3.1%.. N 3.? em a: m 9.4.2 um 22 _ «3.: em :2 m 8.2; em 3: N 3.3 om alumina 3: 2.3 um 31.2 m 42.3 um 3< N 3.3 um Ne: 83. cute; 30 cinem— eem acouanBn’x ogeeagswefimonm cannon—Sm emcee—monumeam 888$ omEoEemm Sufi—mean 08:52 9335 one—z 0353638 oabmoom— , Become—.38 Seguefizméon sepaaafimn2 / [p(1-p>+DAAi iq(1—q)+DBB] where N is the sample size and DAA and DBB measure deviations of observed from expected frequencies of individuals homozygous for the non-allelic genes A and B, respectively. Direct comparisons of AAB between populations are complicated, however, by the fact that AAB is gene frequency dependent. Therefore, for inter-populational comparisons we calculated correlation coefficients as suggested by Laurie-Ahlberg and Weir (1979) in which, N = AAB/ [p(1-p)+ DAA] [q(1-q) + DEB]. 21 Table 2. Null hypotheses (I-Il-H4) concerning tests of linkage disequilibrium within gametes (Dw) and between united gametes (Db). MWW H1 Db==0 Test of random association of non-allelic genes between uniting gametes. HZ Db-i-Dw=0 Test of random association of non-allelic genes within gametes. Db+Dw is equal to the conventional measure of linkage disequilibrium (D). H2 is, therefore, the standard test for gametic disequilibrium. H3 Dw=0 Test of non-allelic genes being associated more strongly within gametes than between uniting gametes. H4 Dw+2Db=O Test of whether composite measure of linkage disequilibrium involving non- allelic gene associations within and between uniting gametes is significantly different than 0. 22 Results and Discussion W Alleles for all 12 polymorphic loci were found to have a genetic basis and all F1 progeny had genotypes that could be transmitted from their test cross parents (see Table 3 for segregation results; data for Acon-Z, Act-2, Pgm, Idh, Pgi and Had are omitted because Mendelian segregation for alleles at these loci has already been demonstrated by Berlocher and Smith, 1983). Only one locus, Aat—I , consistently failed to fit Mendelian expectations for an autosomal locus. Heterozygote males were not found for Aat-I . This suggests that Aat-I is sex-linked and that males are the heterogametic (XY) sex in R. pomonella. Confinnation of sex-linkage for Aat-I came from crosses between heterozygous females and single banded males (males which were presumed to be hemizygous). Female progeny from such crosses were either homozygous for the allele possessed by their fathers or heterozygous. Male offspring, however, were always single banded for one of the Aat-I alleles possessed by their mothers and were, therefore, hemizygous (Table 3). Three "cross types" showed significant deviations from Mendelian expectations (Table 3; Note: G-contingency tests indicated that genotypic frequencies were homogeneous among test crosses pooled to form all of the cross types analyzed in the study.). An excess of Did-21ml Dia-290 progeny was observed in cross type 6 for Did-2 while cross types 6 and 7 for Pep-2 produced an excess of Pep-2100] Pep-2106 heterozygotes. Although the three significant deviations out of a total of 62 tests could be due to any number of factors including selection, they are most easily explained by random type I error. 23 6 *5; Amv***cw.w_ AN6 62 CV 86 CV 6w; Amv *mmd ANV Rum CV 36 5 RN :6 NN6 AS aN.N A: hmd ANV 6c.N A: 56 3.3 NM v 6— ~52 2 625: a 6252 m 6252 2 6952 N H“.652 MN 6252 2 6252 2 6252 wN 6252 a 6252 5N 6252 hN 6252 Nm H2 ~52 NN 6252 g 6252 vw 6252 v 6656 62 6&9: 2 66266 6 6252 a 6656 Nm 625m 2 6252 6N 625m 62 633 N6 625x 6». 6252 m 6266 2 ”mafia 6w 6252 2 M352 2 6252 62 6252 6Q ”252 N6 6252 52 6252 m 6252 Z 6w52 N 6w5w 6» 6652 g 6w5w w2 6w56 625: x 6252 352 x 62\8~ 6252 x 66292 6252 x 6252 2 262 x 6252 6252 x 6252 6252 x 6252 252 x 6952 352 x 6652 35w x 352 6252 x 252 665w x mafia 6252 “56:82 352 x 6252 6252 x 8252 252 x 6252 c252 x6252 352 x 6652 352 x 85m 85m x 665” 8 h S e 6 m 5 v 6 m 8 N a: AN6 6 A8 6 ANV v A3 m A: N A8 _ ANV N 33 2 3 N 2: _ A: m 36 N A66 2 $5 Néa >o< a: 22 .25 «8.5 05 .56 365.386 3058:: 05 wage—3.. women—E23 5 53% mm 25 898 :80 8.6 6289 mommob an. «e .3682. BE. Ao—afiz .ofifiomumv x8 9 asp—08a banana :03» 2a 23.. .86 8.5 Swans 03% 05 8.. ago—3 3382 :30: “a 8.. 830.8 83 :86 93%.: couampHMom .m 033. 24 Seaman 0255.2 65 025: 8.2 222.5228 256 203 2.8< .52 8382325 .83. 03:23-25 .3 BEE—206 2 2338.25 0292.28» 896 8023256 .5o62ew2m 28.6 w m .2... 266 w M2 2. 36 -v. m ... A26 Nm.N 22v 8.2 AC EN 226 2 26 A26 mud 22v 86 22v 3.2 2 26 EN 6.2.3 NM 2. 622- v2 62- 2 6622-52- m 622-522- "2 m2 622- MN 62- 2 2 622-52- : 62.52- «2 m #6- 2 62- 22 662-56- 662-52- "2 6 66- 22 62- S2 2.62.56- N H26.56- "2 M6 62- 52 m6 62.52- "2 gun—23% $2 22- 2 62- 22 c2- 2V6 S2 62- x 2 2.52- .2 x 2 2.52- n2 x 26.562- .2 x V6.52- ”2 x 62.52- "2 226 m 2N6 v 23 m 226 N 22.6 2 2 -23. 3% add-Inga 2.6.8on .m use. 25 Confirmation of a genetic basis of inheritance for Me, Dia-Z, Acy, Mpi, Pep-2 and Aat-I brings to 18 the number of polymorphic allozymes characterized in R. pomonella. Extensive biochemical surveys of natural apple maggot populations are now possible on a scale approaching those of other study organisms. The combination of genetic, behavioral and ecological data now available for the apple maggot makes the animal a unique organismal system for the study of evolutionary processes within a historical timeframe. Wes-ultr- Restricted crossing over in Rhagoletis males (Berlocher and Smith, 1983) makes it possible to determine whether two loci are linked based on the pattern of assortment observed in crosses between double heterozygous males and homozygous females. Our results continued that exchange is limited in males in that only one recombinant genotype was observed out of a total of 660 cases in which crossing over in males could be detected. We therefore used the simple method of following the assortment pattern in double heterozygote male crosses to determine linkage groups. Linkage assignments for Acon-Z, Idh, Aat-Z, Had, Pgi and Pgm were in agreement with the relationships previously reported for the apple maggot (Figure 1; see Berlocher and Smith, 1983). In addition Did-2, Me, Mpi and Pep-2 were mapped to linkage groups I, II, II, and 111, respectively. Aat-I was placed in linkage group V which was designated by Berlocher and Smith (1983) as containing the sex-determining factor(s). Acy was not mapped to any specific linkage group. However, I can rule out its association with loci on groups I and II due to its random assortment with Idh, Aat-Z, Did-2 and Acon-Z in test crosses involving double heterozygote males. Also, Acy did 26 Figure 1. Linkage group assignments and map distances (in centimorgans) between loci for R. pomonella. Assignments and distances given in parentheses are based on data from Berlocher and Smith (1983). 27 .2 8:5 H .3 22.2 2.20 5 8c "34 H 3 2 965 5 6: "23.: H .6 222 .22 .2 95.5 E .o: 6263 3250 tonnes 3.22:5 62.230 .352 0: 2H 53055.28 .8» ._ -8< H Ed H ill-mfimlllt " u x L. E m-eed ea: . .17. t 322 7.651 .r . H2 1% €53-32- illnmémllll .AN null]. Flint-2m 9i. “ H -.e< ~65 e... :3 sad 82.230 32 one 60-. 955 oooxcj 28 not show sex linkage so it is not in linkage group V. Map distances and the relative gene order of linked loci can be determined from crosses involving female parents that are heterozygous for multiple loci. The results for linkage group I differed slightly from those of Berlocher and Smith (1983) in that in our study the crossover distance between Idh and Aat-Z was greatly reduced (10.3 centimorgans (CM) compared to 30.3; Table 4). Recombination rates between Idh and Aat-Z were heterogeneous, however, among the test crosses of Berlocher and Smith (1983). We also found cross to cross variation in map distances between Act-2 and Idh ranging from O to 22.2 cM (Table 4). The lower map distance observed in this study could therefore be the result of calculating exchange rates from crosses involving a higher percentage of inversion heterozygote females than in the previous work. Support for this interpretation comes from the finding of significant gametic disequilibrium between pairs of non-allelic genes encoded at Act-2 and Idh (see discussion in next section on Linkage Disequilibrium and Genetic Variation in the Laboratory Stock). Unfortunately, extensive ectopic pairing of polytene chromosomes in Rhagoletis (Bush,1966) prevents us from directly verifying the existence of inversion polymorphism. Map distances were also determined between Had and Pep-2 in linkage group III and Acon-Z, Mpi and Me in linkage group II (Table 4, Figure l). Surprisingly, not a single recombinant genotype was observed among Acon-Z, Mpi and Me in 162 progeny scored. Five allozyme linkage groups are now known for R. pomonella which presumably correspond to 5 of the 6 chromosomes comprising the haploid karyotype of these flies (Bush, 1966). Any biochemical, morphological or behavioral trait can therefore be mapped to a specific Tmme‘fi“ chi Linkage_gzgun_l Dia-Z/Aat-z Dia-Z/Aat-z Aat-Z/Idh Idh/Pgm Linkage_g:222_111 Pep-Z/Had 29 thHfimmmxsGnomuhmngum)mflmflmwdbmwwznkxifiouummfle pair crosses. Gregg # 16 .29 21 ii 11 A221 0.0 3.7 11.1 0.0 0.0 3.2 11.1 7.4 11.1 5.6 0.0 7.1 11.1 11.1 22.2 5.6 0.0 10.3 -- -- -- -- 38.9 38.9 2Q 11 AXE; 22.4 27.8 23.9 30 linkage group. Unfortunately, we are currently unable to associate specific linkage groups with their corresponding chromosomes due to the poor quality of polytene chromosome preparations in R. pomonella. However, we assume, like previous investigators (Berlocher and Smith, 1983), that the unmarked sixth linkage group represents the small dot chromosome observed in metaphase preparations (Bush, 1966). Linkage groups appear to be surprisingly well conserved between Rhagoletz's and its distant confamilial relative the medfly, Ceratitis capitata. For example, the loci Pgm, Idh and Aat are all linked in the medfly as in R. pomonella (see Figure 1 and Gasperi et al., 1986). Also, Mpi and Adh map to the same chromosome in the medfly while Had, Pgi, Mpi-Adh, and Aar- Idh-Pgm constitute four different linkage groups (Gasperi et al., 1986). Genetic studies of additional allozyme loci and Tephritid species will therefore provide valuable insight into the evolution of specific gene clusters. Aat-I represents the first sex-linked marker mapped in R. pomonella. The segregation pattern for Aat-I is the first evidence that males are the heterogametic (XY) sex in the species. Hemizygosity for Ant- 1 in males implies that the X and Y chromosomes are not completely homologous. However, morphologically distinct sex chromosomes have not been found for R. pomonella (Bush, 1966). It is possible that an undetected translocation between an autosome and the sex determining chromosome (linkage group V) was responsible for generating sex-linkage for Aat-I. XY: autosome translocations have been found for R. tabellaria (McPheron and Berlocher, 1985) and in the R. suavis group (Berlocher, 1984a), however, translocated loci were not hemizygous in these cases. Determination of linkage relationships for Aat-I in additional Rhagoletis 31 species will help resolve this point. L°k-é'Dlr-.-_or1_.11- 9 1.11.“..11. _1‘ him .0 01k Progeny testing of double heterozygote parents allows complete identification of coupling and repulsion two locus genotypes. Therefore, Dw (linkage disequilibrium within gametes) and Db (disequilibrium between united gametes) could be calculated between pairs of linked, non- allelic genes for the R. pomonella laboratory strain (Table 5). Hypothesis 1 (Db = 0; see Table 2 for explanation of hypotheses 1-4) was true for 35 of 37 pairwise tests. Only MeIOO/Aeon-289 (xi = 3.9, 2 5 0.05, 1 d1) and Mpi100/ Aron-2100 (x2 = 6.71, 2 _<_ 0.01, 1 df) showed significant deviations from non-random union of gametes. These two significant tests may be explained by random type I error. When gametes unite at random and survivorship is equal for coupling and repulsion genotypes, Dw is a direct measure of linkage disequilibrium within gametes and H2 (Dw + Db = 0) becomes equivalent to H3 (Dw = 0; Cockerham and Weir, 1977). Of the 35 tests in which H1 (Db = 0) was true, 23 were significant for either H2 or H3 (Table 5). Non- random associations were found between non-allelic electromorphs for Me/Acon-Z, Idh/Aat-Z, Idh/Dia-Z, Aat—Z/Dia-Z and Had/Pep-Z. Linked genes, therefore, showed substantial amounts of genetic covariation in the non-diapause line. Burrows disequilibrium values (AAB) were calculated between pairwise combinations of unlinked genes in the laboratory stock. Only 6 of 140 tests of the hypothesis AA3 = 0 were significant and no pattem was discemable among loci displaying significant tests (data not presented). The general lack of disequilibrium between alleles at unlinked loci indicates 32 Table 5- Linkage disequilibrium between pairs of non-allelic genes in the laboratory stock of R. pomonella. Results are given for drseq' uilibrium within gametes (Dw), between united gametes (Db) and for a composite measure of Dw and Db (A, Bunows value). See Table 6 for explanations of test hypotheses Hl-H4. Loci/Alleles Bu 1}, NB Significant Hypotheses 1B1? 00 0.1000 -0.0305 0.0389 112** 113* bloc/W5 -0.0330 —0.0111 -0.0555 114* 1210611111189 -0.0667 0.0416 0.0167 111* 113* 11911 /Acon1°° 0.0667 -0.0411 -0.0150 111** 113* 1611100 ' -285 -0.1670 0.0225 -0.1220 112*** 113*** 114** range/0164100 0.1670 —0.0333 0.1000 112*** 113** 114* 1611 8fluid-2‘35 0.1830 -0.0186 0.1460 112*** 113*** 114*** 161111 Ania-210° -0.1830 0.0277 -0.1280 112*** 113*** 114** 1611104/13121-2100 0.0167 0.0055 0.0277 112* 114* r 1°°/Aat-221 0.1167 -0.0216 0.0733 112*** 113** Idh °° Ant-2'33 -0.0833 0.0366 -0.0100 113* Idh1 Bat-2 -0.0833 0.0366 -0.0100 112** 113* 114* 161111 8/Aat-250 -0.0667 0.0144 -0.0377 112* 161111 8/Aat-275 -0.1167 0.0128 -0.0911 112*** 113** 114* Idhll /Aat-275 0.1000 —0.0400 0.0200 113* Idh mat-2123 0.0677 0.0058 0.0783 112** 113* 114* Din-235 hat-25° -0.0667 0.0011 -0.0644 112** 114** Din-235/Aat-221 -0.1833 0.0394 -0.1044 112*** 113*** 114*** via-23S/Aat-275 0.1500 -0.0300 0.0900 112*** 113** 114* Din-2306112152123 0.0667 -0.0092 0.0483 112** 113* via-21 Aat-250 0.0833 -0.0111 0.0611 112*** 114* via-21 oo/Aat-zzl 0.1500 -0.0277 0.0944 112*** 113** 114** Din-21 Aat-275 -0.1500 0.0330 -0.0833 112*** 113** 114* Die-21 /Aat-2123 -0.0500 0.0000 -0.0500 112* 114* Pap-210° 10° -0.0667 -0.0064 -0.o790 112** 114* pep-21 /Had122 0.0500 -0.0006 0.489 112* =1 12 _<,0.05 1* 12 s 0.01 m 12 5 0.001 Chi-square test (1 d1). 33 that genetic interactions across chromosomes are not strong in the non- diapause strain. The non—diapausing line has a surprisingly high level of heterozygosity (Table 6). Ten of the 12 loci analyzed showed a trend for an excess of heterozygosity over expectation. Several loci in the non- diapausing strain also displayed significantly higher levels of heterozygosity than were observed in 11 natural populations of R. pomonella (Table 6). Small population sizes associated with laboratory rearing should theoretically lead to a loss of neutral allozyme variability according to the equation: Ht/Ho = (1-(1/2Ne))t . where Ht is the heterozygosity of a population after t generations in the laboratory, H0 is the heterozygosity of the founding population and Ne is the effective size of the laboratory population (Wright, 1931). If Ne=150 and t=40 (reasonable approximations for the laboratory stock), the ratio of Ht to Ho should theoretically be 0.875. Although we do not know Hg for the original New York population, an estimate of 0.406 can be made based on the average level of heterozygosity observed in 11 natural populations (Table 6). The average Ht for the laboratory population is 0.439 so that the actual value of Ht/Ho is 1.08. The laboratory line therefore has a slightly higher, rather than a lower, overall level of heterozygosity compared to natural populations. Heterozygosity is not, however, the only aspect of genetic variation which can be affected by a sudden reduction in population size. Allelic diversity is also a sensitive indicator of whether a population experienced a 34 Table 6. Observed and expected heterozygosity and the presumed number of alleles lost in the laboratory stock compared to nann'al apple maggot populations. Ave 11 natural 9229131112115 1.193.113 11.5212: 21.9119... 81.191.92.129; HM Me 0.333 0.278 0 0.472 t 0.066 Mp1 0.133 0.125 4 0.247 t 0.076 Acon-Z 0.767 0.654 4 0.561 t 0.164 Aat-Z 0.800 0.738 7 0.737 t 0.035 Dia-Z 0.633 0.506 0 0.369 1 0.050 Idh 0.467 0.529 3 0.422 t 0.033 Had 0.433 0.406 2 0.373 t 0.089 Pgi 0.400 0.444 5 0.182 t 0.052 Aat-l 0.533 0.424 2 0.299 t 0.075 Acy 0.066 0.064 2 0.348 1 0.092 Pep-2 0.533 0.475 0 0.503 t 0.160 Pgm 0.167 0.156 6 0.344 t 0.091 All loci 0.439 0.400 2. 0.406 35 recent bottleneck (Nei et al., 1975; Maruyama and Fuerst, 1985). This point certainly holds true for R. pomonella as the laboratory strain appears to have lost almost half the number of electromorphs normally found in wild apple populations (Table 6). However, we can only assume that alleles missing from the laboratory stock were lost because we have no information concerning the genetic composition of the original apple population from which the non-diapausing line was derived. Nevertheless, our rough estimate of a 40% decline in allelic diversity for the laboratory line agrees reasonably well with the colony having gone through a bottleneck of around 150 individuals (see Table 3 of Nei et al., 1975). The slightly higher level of heterozygosity in the non-diapausing strain is therefore surprising because of the obvious effect that the population bottleneck had on allelic diversity. What factors, then, are responsible for maintaining gametic disequilibrium and the higher than expected levels of heterozygosity in the laboratory population? Founder effects and drift related to the smaller size of the laboratory population are undoubtedly involved in generating gametic disequilibrium. However, several of the loci displaying disequilibrium are separated by a number of map units. For example, Idh and Aat-Z are 10.3 cM apart and Had and Pep-2 are separated by 23.9 cM. Recombination should be common among these loci and result in the rapid decay of linkage disequilibrium. Consequently, founder effects and drift cannot be the only factors responsible for gametic disequilibrium in the laboratory line. The heterogeneity of recombination rates observed among allozyme markers in linkage group I suggests that inversion polymorphisms exist in the laboratory population. It is therefore possible that heterosis associated with inversion heterozygote genotypes is 36 maintaining gametic disequilibrium and genetic heterozygosity in the laboratory stock. ‘ 1... i fDi f! 111111-11 11‘ 5111 11m -.to -. 1 N 1.1: P 0. tion Comparisons of correlation coefficients (rAB) between the laboratory and a natural apple maggot population from western Michigan indicate a drastically different pattern of linkage disequilibrium for Me/Acon-Z , Pep-Z/Had and Dia-Z/Aat-Z (Table 7). For instance, MeIOO/Acon-295, Pep-2100/Had100 and Dia-285/Aat-221 are highly positively correlated in nature while being highly negatively correlated in the laboratory strain. Besides Me/Acon-Z, Had/Pep-Z, Dia-Z/Aat—Z and Me/Mpi, however, no other pair of loci show a consistent pattern of linkage disequilibrium in the natural population. Why is the pattern of linkage disequilibrium between non-allelic genes different in nature than in the laboratory? Geographic differentiation between populations from Geneva, New York (the original source of the laboratory stock) and Michigan could account for the differences. However, analysis of other natural R. pomonella populations from across the northeastern United States (Chapter 3) has revealed the same pattern of disequilibrium as seen in the Michigan population ruling out geographic variation as a possible explanation. Differences in the breeding structure of the laboratory and natural populations could also account for the observed differences in linkage disequilibrium. Unfortunately, the composite nature of rAB does not allow us to determine the extent to which the non-random association of genes within gametes (Dw) and the non-random union of gametes (Db) affect linkage disequilibrium in the natural population. If Dw is the same in 37 Table 7. Correlation coefficients calculated between pairs of non-allelic genes for the laboratory stock and a natural apple fly population collected from Grant, Michigan. AW W1 W MelOO/Acon95 -0.374* 0.379*** MelOO/Mpiloo 0.069 -0.214* up11°°/Acon1°° -0.010 -0.242* IdthO/Dia-235 -0.530** 0.044 IdthO/Dia-2100 0.499* -0.055 Idh113/01a-235 0.631*** -0.018 Idh113/oia-2100 -0.570** 0.018 Idh104/oia-2100 0.373* 0.098 IdthO/Aat-2123 -0.399* -0.036 IdhllB/Aat-zzl -0.431* 0.131 Idh113/Aat-2123 0.454* 0.058 Dia-285/Aat-250 -0.473** 0.203 01a-235/Aat-221 —0.604*** 0.250** via-285/Aat-2100 -0.218 -0.333*** via-21°0/Aat-250 0.463* -0.307*** via-21°0/Aat-221 0.564** -0.456*** oia-zloo/Aat-zloo -0.163 0.380*** Dia-zloo/Aat-275 -0.428* 0.254** oia-zloo/Aat—2123 -0.366* 0.031 pep-21°0/uad100 -0.457* 0.486*** * B S 0.05 *" B _<_ 0.01 "* 2 30.001 Chi-square test of Burrow's values. 38 nature as it is in the laboratory then selection, differential fecundity or fertility, deviations from non-random mating and/or gene frequency differences between sexes, could all be significant in the natural population. Almost all single locus Hardy-Weinberg tests, however, were in equilibrium for the Michigan population (see site 5 in Tables 21-32). This suggests that mating is random and single locus selection is not strong within the wild apple maggot fly population. Also, gene frequencies were not significantly different between males and females in the western Michigan population (data not shown). These findings all suggest that it is Dw, rather than Db, which differs between laboratory and natural R. pomonella populations. Although we cannot completely discount non-random union of gametes in nature, two observations make it tempting to speculate that selection for high fecundity and/or rapid development has favored alternative combinations of non-allelic genes for Me/Acon-Z, Pep-2/Had and Dia-Z/Aat-Z in the laboratory population. First, test crosses between laboratory strain flies generally produce about twice as many F1 offspring as those between wild type parents (J .L. Feder, personal observation). Second, allele frequencies for Me, Acon-Z and Had correlate with the timing of diapause termination and adult eclosion in natural R. pomonella populations (Feder et al., manuscript in preparation). Regardless of its causal basis, the results from this study indicate that the non-diapausing line has an altered genetic constitution. Genetic, physiological and behavioral changes associated with laboratory rearing are now known for a number of insect species including Drosophila melanogaster (Laurie-Ahlberg and Weir, 1979); the screw worm, Cochliomyia hominivbrax (Bush and Neck, 1976; Bush et al., 1976; Singh, 39 1984); the codling moth, Laspeyresia pomonella (Bush, 1975b); the olive fruit fly, Dacus oleae (Prokopy et al., 1975; Bush and Kitto, 1979; Economopoulous, 1980; Economopolous and Zervas, 1982; Loukas et al., 1985); and the med fly, Ceratitis capitata (Saul, 1986; for a more extensive review of the insect literature see Menken and Ulenberg, 1987). Although we are not aware of any studies directly comparing the behavior of laboratory and wild apple maggot flies, the genetic changes observed for the non-diapausing line give a warning that the colony may also be behaviorally modified. Chapter 2 Genetic Differentiation between Sympatric Host Races of the Apple Maggot Fly, Rhagoletis pomonella Introduction True fruit flies in the Rhagoletis pomonella species group have been proposed to speciate sympatrically (that is, in the absence of geographic isolation) as a consequence of shifts to previously unexploited host plants (Bush, 1966, 1969a,b, Bush, 1975a). Because Rhagoletis larvae are host specific fruit parasites and mate selection in these flies is directly coupled to host plant recognition (Prokopy et al., 1971,1972), variation for larval survivorship and host preference traits can act as genetically based barriers to gene flow and subsequently result in the sympatric divergence of fly populations adapted to alternative hosts. The shift of R. pomonella fr0m its native host hawthorn (Crataegus spp.) to domestic apples (Malus pumila) in eastern North America within the last 150 years (Walsh, 1867) provides an opportunity to determine whether host specialization is sufficient to differentiate populations without prior periods of geographic isolation. In this Chapter, I report finding significant genetic differentiation between co- occurring hawthorn and apple populations of R. pomonella at a field site 40 41 near Grant, Michigan. The result confirms that hawthorn and apple flies represent partially reproductively isolated "host races" and is consistent with a sympatric mode of divergence for these flies. Materials and Methods R. pomonella flies were collected from an old field located near the town of Grant (Newaygo Co.) in western Michigan (Figure 2). In 1984 and 1985 flies were sampled as larvae from infested fruit and reared to adulthood in the laboratory. In contrast, adults were captured directly off of host fruits by sweep net in 1986. Standard horizontal starch gel electrophoretic techniques were used (see Chapter 1 for details and also Berlocher and Bush, 1982) and a total of 29 different allozyme systems were resolved (Table 8). Alleles were numbered according to their relative anodal mobilities, with the most common allele for a locus assigned a value of 100 and used as a standard. Isozyme systems that migrated the nearest to the cathode were designated 1, the second closest 2, etc. Thirteen loci were polymorphic (frequency of the common allele less than 0.95; Table 8) and, excluding Aat-I which is sex-linked, only 15 significant deviations from Hardy-Weinberg equilibrium were observed for these loci in 290 tests (data not shown). The significant deviations displayed no regular pattern and their number does not differ from random expectation due to type I error. Results Six allozyme loci, Aconitase-Z (Acon-2), Malic enzyme (Me), M annose phosphate isomerase (Mp1), Aspartate amino-transferase (Am-2), NADH-Diaphorase-Z (Did-2) and beta-Hydroxy acid dehydrogenase (Had), 42 Figure 2. Scale diagram of study site located near the town of Grant, in western Michigan. The site is an old field which has remained fallow since at least 1922 (E. Hansen, pers. comm). Host tree designations (A=apple, H=hawthom) are given along with collecting dates and inter-tree distances (in meters). 43 .N 2:me nmxmxo 83.3 $2?» 838 33.3 2 $33 68. 883 e .6253 65. $33. 83.3 . 62.. .4 838 858 :1 $53 ¢m\n_\m .08 S8222 4:05 0:. .0 80:08.08: 88.60.”. 30:38:10.... 800.38% 835;... 800. a 8.8.0:. . nod A 30:0 85:50 0... .8 88:00.... 0... .23 802 605.. £8.88 :0 8.865 .4 .805 86 area .82. .68 2.5 .885 .338 cm .0 73$ 33 888$ .85 0808002888.... at 08.088. 0.0.38.3 08E. 080$ 08038885 8.: 08—20.... $00,880.. Gem. 08.28:. 028.85 8.8.88. 928.9... 36982 a e . an: m 0 78.88... 08.0.8 202 .a a. 208 N 8 7.88883... 9%: gouaczsoc 0.8.88— 35 8830x0m 0888.628 egaxegmé A806 8.08:". ~-ae£%$8§ a 8 .85. m 8 788938-83... a 8 . 8.88.50 65:8 288.8 62$ 08.82 85.0. 92.53. .a 8 23: N 6.. 88.200802... .282 «08.803. 2-803 708.203. 8.88:5 283 088.38.... 300-3582 .0.0 .N .0800: 0:88 0... 4 80.93 00.08.80 0... 00058 0:. o. .08.. 0... 8.0%.... .05 8.508. 8858...... 5 :03» 0.... 80830.30 088.5 450.853 .x no 800.. .8: 0... 8.. 00208.. 8880:... .w 030,—. 45 showed significant allele frequency differences between flies collected from sympatric hawthorn and apple trees at the Grant, Michigan site (Tables 9, 10). Allele frequencies for Acon-Z and Me were significantly different between hawthorn and apple flies within each of the three years sampled and did not vary significantly among either apple or hawthorn trees within any year (Tables 9, 10). Aat-Z, Did-2 and Mpi also showed host related differences. However, gene frequencies varied among flies from different apple trees for 1401-2 in 1985 and for Did-2 in 1984 and 1985 as well as among hawthorn trees for Mpi in 1985 (Tables 9, 10). Allele frequencies for Had differed significantly between hawthorn and apple flies in 1985 but not in 1984 or 1986. Had also varied significantly among apple trees in 1984. None of the other 7 polymorphic loci resolved in this study showed significant inter- or intra-host frequency differences. Allele frequencies were reasonably constant between 1984 and 1985. Of the 13 polymorphic loci, only apple tree #1 for Me (G=9.67, B s 0.01, 1 (If) and hawthorn tree #1 for Dia-Z (G=4.66, E, _<_ 0.05, 1 df) had significant frequency differences between 1984 and 1985 (data for Acon-Z, Me, Mpi, Aat-Z, Did-2 and Had are presented in Table 10). However, eight out of a total of 20 tests for Me, Acon-Z, Mpi, Aat-Z and Dia-Z showed significant differences between 1985 and 1986. Allele frequencies for both apple and hawthorn flies displayed a general trend to become more "apple-like" in 1986 compared to previous years (Table 9). The shift in 1986 allele frequencies could be explained by selection either in the field or during laboratory rearing as flies collected as larvae in 1985 and adults in 1986 represent different life history stages of the same generation. However, frequency shifts between 1985 and 1986 were in the same direction and of 46 .8000088 .8.....0.... .0 0.9.0. .800... 0... 00.30... 8.0.... .0 .083. 0... 8.0.80 0.... 00.0.8500 m. 0 0.00... 000.0 00 ~00... 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 3.0.0 00 0130.. .3002. 000.0 00 000.0 00 000.0 000.0 00 0.00 000.0 00 000.0 03.0 00 000.0 00 0130... 0000 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0130.. 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0130.. .0030... 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 .0 000.0 00 0130: 0000 .0080... 000.0 000 000.0 000 30.0 000.0 000 000.0 000.0 000 000.0 000.0 000 000.0 000 0130... 0000 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0100.09. .3085 000.0 00 000.0 00 000.0 000.0 0.. 000.0 000.0 00 000.0 000.0 00 000.0 00 0100.50 0000 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 01009.... 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0100054 .0080. 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0100.09. 0000 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 «0 0100.090 .080. 000.0 00 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 000.0 00 000.0 00 0100...... 0000 gagnflgqmgnagnan .0030. 8i jar... lg]: lgll Jall Idal a... a .00.... 0.08 n .. .0... 0.00.0 000.00.24.80 0... .0 82. 0.0.... 0.8 08.03.... .8... 00.00000 8.... 8.. 002 000 0-0.5 .080. .32 0.800. .0: 8.. 8.000000... 0.0.2. .0 0.00... 47 .2 00.. 33.-00.0.... ..0.0. .00.. .200 0... .0. .0.0. 00.00.. 0... 30.000 0.00.. 00.. 0.. 00.. 0 ..0 00.000000 0.03 0.00. .00....0.... .0000. 0 .0. 00.3.0000 003 3.0000822. .00..-0..... 800......00 00:3 ..30..-0.....< 0003.00. :00. 0.00. .00....0.... .0. 000.. 0.03 0.0.0. 00.00.. 000... 0:0 000.. .00.. 000.00 00.00.. 0.03 0.00. $00-00... 8000.00.0-000 .0. 00.000000... 00000 .00. 00000000090 .00... w m 3...... .0... w m 3... 00... w m 3 .0. 00.0 3.0. 00.3 .0. 0... .0. 00.0 .0. 00.3 .0. 00.0 0 8.03. .095. .0. 00.0 .0. 00.0 .0. 00.0 .0. 00.. .0. 00.0 .0. 0.... 0 8.00.3. 0000\300. .0. 00.0 .0. 00.0 .0. 0...... .0. 8.0 .0. 00.0 3.0. 00.0 . me... 0&0 .0300 a. 00.0 .0. 9.0 .3. 00.0 .0. 8.0 3.0. 00.0 3... 00.0 0 0.5.3. 3.60 .0. 00.0 .0. 00.0 .0. 8.0 .0. fl...- 3... 00.0. .0. 2.0 0 800:0. .85.. .0. 00.0 3.0. 00..- 33. 8.... 3.0. 00.0. .0. 00.0 .0. 8.0 0 on... 0&0 0000000. .0. 00.. .0. 00.0 .0. 00.0 3.0. 03.0 .0. 00.0 3... 00.0 0 on... 0&0 50.80 .0. 00 0 3.0. 00.0 .- .- u u 03....- 8... 0&0 3.0. 00 0 33.0. 00.00 -. n .- u .30... up... 0&0 u -. 33.... 00.00 33.0. 03 00 33.0. 00.00 33.0. 00 00 3.0.0.3. 5980 .83.... 3.0. 00.0 3... 30.0 .3. 00.0 .0. 00 0 .0. 00.0 .0. 00 0 In... is .00. .- 33... 00.0. 3.... 8.0. u n u 3...... 88. 3&0 u a. .1. 33.... 00.00 . n u ml... 8.... 0&0 -. .0. S 0 .0. 03.0 -. - -. an... «a... 0&0 u u .- 310. 00.0. .- u 0 3... 30803. .- -. n 33.0. 8.0. u u 0 .2... 33.-8&0 u u .- 3... 0...- .- u 0 on... 3.0.8.3. 33... 00 00 u u n 33.0. 00.3 33.0. 00.00 $59.00 .0. 8.0 .0. 00 0 .0. 8.00 3?. 3.0. .0. 00.00 .0. 00.0 800...! was. .095. .0. 00.0 3.0. 00 0 3.0. 0100 .0. 00.0 .0. 00.0 .0. 8.0 8.5 «0&0; 000. .0. 3.0 33.0. 00.0. 3.0. 0...... 33.0. 00.00 33.0. 00.00 33.0. 00.0. 30036380 .0. 00.0 .0. 00 0 .0. 8.0 .0. 00.0 .0. 00.0 .0. 8.0 80.03.. was. 33.0. .0. 0.... .0. 00 0 .3. 00.0 .0. 00.0 .0. 3.0 a. 00.0 .85 1&0 an! 080 3 0H... a 3. E a. 3 EH!» 00005020.. 0. ..0>.0 0.0 80000... .0 000.000. .0... 00020.2 000.0 0... .0 0.5 000 0-0.5 .043. 0.0:. .0083. .03. .0. 00000.0...0 0000000.. 0.0.... .0. 0.00. 0000000000-.. .0. 0.00... 48 similar magnitude for both hawthorn and apple flies (Table 9). Therefore, if selection did occur, its effects were unifomr across host plants. Allele frequencies for Acon-Z, Me, Mpi, Aat-Z, Did-2 and Had may not be evolving independently. Hitchhiking effects for linked loci and epistatic selection can coordinately change allele frequencies at a number of loci. To examine these possibilities, correlation coefficients were calculated between pairs of non-allelic genes based upon Burrows disequilibrium values (Cockerham and Weir, 1977; Laurie-Ahlberg and Weir, 1979). Significant disequilibrium was found between Me/Acon-Z, Me/Mpi, Acon-Z/Mpi and Aar—Z/Dia-Z (Table 11). These results agree with the known genetic map of R. pomonella as Aar-Z and Did-2 are 3.2 centirnorgans apart on linkage group I while Acon-Z, Me and Mpi are very tightly linked on linkage group II (see Chapter 1). Loci showing genetic differentiation between hawthorn and apple flies therefore map to thee different regions of the genome, and hitchhiking effects are likely among non-allelic genes within at least two of these regions. Interactions between unlinked loci were not readily apparent from the correlation coefficients. Twenty-one significant tests of gametic disequilibrium were observed in 314 pairwise comparisons between Mpi, Acon-Z or Me and either Aat-Z or Did-2 (data not shown). Had, which has been mapped to linkage group III (see Chapter 1 and Berlocher and Smith, 1983), was in gametic equilibrium with either Acon-Z, Me, Mpi, Aat-Z or Dia-Z in 153 of 160 tests. Although inter-chromosomal levels of gametic disequilibrium cannot be completely explained by random type I errors, no consistent pattern was observed in either the loci or alleles involved in the significant tests. Allele frequencies for unlinked loci, therefore, appear to be evolving independently in both hawthorn and apple populations. 49 «eehmmm.o cutomm¢.o «ceHmv¢.o «cthmm.o «tebmnm.o «eeanm.o «temmom.o «ehnno.o «mnm~.o «eHmmw.o «eemmmw.c «cemmb¢.o «cemvom.o «echH~¢.OI «hHon.OI ammo.OI «HHnn.ct mm¢N.oI HmmH.OI mm~N.or omm~.0t thH.OI «teemne.0I «tmn¢n.0| mth.OI «eahan.0t nme.OI «imvvn.OI vaN.OI mhoH.OI «onvn.ot thN.OI «ochN.OI nan.OI hmmH.OI «Chum.OI «ommH.OI whNH.OI «MNQN.OI cnth.o «emmmn.o HnNH.o momH.o «eHmvc.o cecmmn¢.o «bnm~.o «oomm.o unHH.o nnoo.OI «nona.o «mamm.o «athm.o «eemmwm.o «eHmm¢.o «emmmn.o «aHHnn.o «Hmmn.o cenmbn.o «evnwv.o stepmom.o «ann.o bmnm.c «echb~.o «eamhmv.o «aeHnon.o mmmrflafimuuua mmmrbgbooifi Sigooam: 8H 7804\83 mmmufioaxooam: N H HNM N H .mSHm>.m3onH:m a 3m: H ya: wanna magma n.3mm n.3m: H 3a: manna onna manna H am: «done adage mama Managua uogggfiuméfifluugfldbflm 3o. war; 8. war. no. mm... .muaauav mama Aun>uuuv mama Aun>umqv «mad \qmma dos?» 8355336 com: v83 mono» 0223-5: .3 33 :853 33328 $25 358530 5:39.80 4 $35. 50 Discussion Several factors, alone or in combination, could be responsible for the observed allele frequency differences between hawthorn and apple flies. Among the possibilities are: (1.) Post mating reproductive isolation between hawthorn and apple flies; (2.) A genetic bottleneck associated with the founding of the apple race; (3.) Differential larval survivorship associated with the host fruit environment; (4.) Differential host recognition by adult flies; and (5.) Temporal differences in the timing of adult emergence. It is very unlikely that post mating reproductive isolation is involved in differentiating host populations. Hawthorn and apple flies readily mate in the laboratory and produce viable F1 progeny (R. Prokopy, pers. comm.) Percent egg batch is similar for apple x apple, hawthom x hawthorn and hawthorn x apple test crosses (Reissig and Smith, 1978). Although data from F2 and backcrosses are needed to completely rule out postrnating isolation, the likelihood of reproductive incompatibility between these flies is remote. A genetic bottleneck during the colonization(s) of apple by R. pomonella may have initially caused gene frequency differences between the host races due to drift. However, for neutral genetic differences to persist requires restricted gene flow between sympatric apple and hawthorn populations. Variation for intrinsic biological factors (i.e., differential larval survivorship, host recognition and/or adult emergence) are therefore necessary to account for the continued maintenance of host race differentiation regardless of its original cause. 51 Although differential selection on larval populations infesting hawthorn and apple fruits could account for genetic divergence, larval selection alone cannot explain the significant frequency differences observed between adults captured directly from hawthorn and apple fruits in 1986 (Table 9, 10). Random dispersal of flies between host plants would homogenize adult gene frequencies even if larval selection was intense (Felsenstein, 1981). Furthermore, adult hawthorn and apple flies show the same pattern and magnitude of host related differentiation as larvae. Gene flow, therefore, must be restricted between hawthorn and apple populations indicating that the host races are not randomly mating in nature. Traits involved in host recognition and the timing of adult eclosion are the most likely candidates responsible for reducing gene flow between hawthorn and apple races. Host acceptance behaviors do differ between hawthorn and apple flies (Prokopy et al., 1988) and prior adult experience can affect host preference in R. pomonella (Prokopy et al., 1982). Field studies have shown that hawthom and apple flies differ in their mean adult emergence times by approximately a week and a half in the field (Diehl, 1984; Feder et al., manuscript in preparation) and by even more under laboratory conditions (Smith, 1986, 1988; Feder et al., manuscript in preparation). Also, the distribution of adults at the Grant site closely follows the fmiting phenology of their host plants as early in the summer flies are abundant on ripe apples but scarce on immature hawthoms while the reverse is true 3-4 weeks later in the season when hawthoms ripen (see Figure 2 for adult collecting dates). Differences in diapause termination and host preference, together with adult conditioning, could all contribute to the establishment of an assortative mating system with early emerging 52 adults tending to reproduce on apples and later emerging flies on hawthoms. The existence of genetic differentiation between sympatric hawthom and apple populations of R. pomonella at the Grant, Michigan site confirms the status of these flies as non-randomly mating host races. The recent formation of the apple race indicates that these flies are diverging sympatrically in the absence of geographic isolation. Additional research is needed, however, to clarify which biological factors are most responsible for creating and maintaining host related frequency differences at the Grant, Michigan site. The geographic pattern of genetic differentiation between apple and hawthorn populations of R. pomonella appears to be complex, however. McPheron et al. (1988a) have also documented significant inter-host frequency differences at a sympatric site in Urbana, Illinois. Their results differ slightly from mine, however, in the pattern of loci and frequencies of alleles displaying inter-host differentiation. In addition, genetic analysis of geographic variation across the eastern United States (see Chapters 3, 4) indicates that north-south allele frequency clines exist for both apple and hawthorn flies across their ranges for five of the six loci showing host associated heterogeneity. Inter-host differences are therefore superimposed on latitudinal patterns of variation within the hawthom and apple races and these clines help to explain the genetic differences between sites in Michigan and Illinois. The results from the geographic survey raise the question of whether sympatric mechanisms alone account for the development of complete reproductive isolation between R. pomonella populations. We consequently feel that it is inappropriate to definitively state that hawthorn and apple races represent "incipient" species. However, 53 the R. pomonella complex does contain a number of sympatrically distributed sibling species specialized on different host plants which are inter-fertile in laboratory crosses, yet remain distinct in nature (Bush, 1966; Berlocher and Bush, 1982; Feder and Bush, submitted; Feder et al., submitted). Chapter 3 The Geographic Pattern of Genetic Differentiation between Host Races of Rhagoletis pomonella Introduction True fruit flies belonging to the Rhagoletis pomonella sibling species group are at the center of a long standing controversy concerning modes of speciation. Speciation in animals has traditionally been assumed to require the complete geographic separation of populations in order to eliminate the homogenizing effects of gene flow (Mayr, 1963). However, Bush (1966, 1969a,b, 1975a) has proposed that certain species groups in the genus Rhagoletis diverge sympatrically via shifts to new host plants. Because Rhagoletis larvae are host specific fruit parasites and mate selection in these flies is directly coupled to host plant recognition (Prokopy et al., 1971, 1972), variation for traits related to host preference and larval survivorship can produce genetically based barriers to gene flow. This reduction in gene flow can result in the sympatric formation of partially reproductively isolated "host races" and eventually species adapted to different host plants. The recent sympatric shift of the species R. pomonella from its native host hawthorn (Crataegus spp.) to domestic apple (Malus pumila) provides an opportunity to determine whether host specialization can differentiate fly populations in the absence of prior periods of geographic isolation. 54 55 Rhagoletis pomonella was first reported attacking domestic apples in the Hudson Valley, New York in the 1860's (Ward, 1866; Walsh, 1867). Agricultural records document the subsequent spread of the "apple fly" from New York throughout eastern North America over the last 120 years (Illingworth, 1912; O'Kane, 1914; Porter, 1928; Bush, 1969a; see Figure 3). The implication that apple flies originated from just a single or relatively few colonization events may be misleading. The spread of the apple fly from New York could also have resulted from several independent host shifts corresponding to expansions in the range of domestic apple cultivation. It is clear, however, that hawthoms are the original, endemic host plant of R. pomonella. Although several native species of crabapple exist in North America, none support populations of the fly (Illingworth, 1912; O'Kane, 1914; Porter, 1928; Bush, 1966). The reason for this has not been adequately studied but it has been suggested that fruits of native crabapple species ripen too late for R. pomonella to complete development before the onset of winter (O'Kane, 1914). The historical timeframe of the host shift is also reliable as domestic apples were introduced into North America from Europe only within the last 350 years (Chapman and Lienk, 1971). Therefore, at no time during the formation of the "apple race" was it geographically separated from hawthorn infesting populations. In Chapter 2, I reported the finding of genetic differentiation between sympatric apple and hawthorn populations of R. pomonella at a field site in western Michigan. Six allozyme loci displayed significant host related frequency differences for both adult and larval life history stages of the fly (Tables 9, 10). These six loci mapped to three different regions of the genome (Chapter 1) and significant disequilibrium was observed Figure 3. 56 Collecting sites for R. pomonella across the eastern United States and Canada (see Table 12 for descriptions of study sites). Dotted portion of map designates the region where flies were first observed attacking apples. Dotted and shaded areas encompass the distribution of apple flies when the first published report of the race was made by Ward (1866). Years are given for the first observation of the apple race in a region. The current distributions of the apple and hawthorn races are indicated by the solid and dashed lines, respectively. Figure 3 is a modification of Figure 3 from Bush (1969a). 57 “0“ 3‘: '- ..I ' mudc uammd ’. / w a a 0. ’u.o‘fi .Jfiexmt. O O.I‘I- .7.I.I.l.l J 4, .-.H 'I...- \- 32.x! I -o!'o-o‘ / I o. . a an...» -....-.-.-.. , a. .\.C.\~ .I ex a-..“ a «3.-.-.. v -.-i\ at. , I.-.‘ f'.'--.I--.'.-.'.A {Nd- ”ho-0d I v -..-.---..' O ‘ A [riff H. I v. "a \- , p a . um ow . frk . a o x ’O- ’I m"' o l a I \ 7" r‘ .' ’ --.‘O' r -.'-'-o‘. .-.-.'.-.b .'.-.'.- ~ .U.-.I.'I.._I. I e .0 g .43 . .-o--- .-o-.-.'.-.- ..--‘.--.-. n'o--n-.- -. u. ' '0 58 between non-allelic genes within, but not between, two of these regions (Table 11). Hawthom and apple populations at the Michigan site therefore represent partially reproductively isolated "host races", a result supporting a sympatric mode of divergence for these flies. Several critical questions concerning the geographic pattern of genetic variation for apple and hawthorn flies still need to be answered, however. The first issue is whether host associated differentiation is widespread across the range of R. pomonella. In this regard, McPheron et al. (1988a) have also found significant inter-host allele frequency differences between apple and hawthorn flies at a sympatric site in Urbana, Illinois. Are these two sites representative of host related divergence for R. pomonella across eastern North America or do apple and hawthorn flies differ on just a local or regional scale? The second question is whether any trends exist in the partitioning of genetic variation between and among apple and hawthorn populations and, if so, whether these patterns point to factors responsible for differentiating the host races. For instance, do the same loci consistently display inter-host heterogeneity between apple and hawthorn flies across sites or are different genes involved at every site? Differences do exist in the loci and alleles showing host associated differentiation between R. pomonella populations from Michigan and Illinois (see Chapter 2 and McPheron et al., 1988a). A For example, Diaphorase-Z displayed higher levels of inter-host heterogeneity in Michigan than in Illinois populations, while the reverse was true for Hydroxyacid dehydrogenase. In addition, Aconitase-Z 95 allele frequencies were reversed between apple and hawthorn populations in Michigan and Illinois. Are these the patterns of variation expected if differential selection were occurring between the host races or is genetic 59 drift a more plausible explanation? Significant linkage disequilibrium was also observed among loci displaying inter-host differentiation at the Michigan site. How common is linkage disequilibrium in R. pomonella populations? If certain non-allelic genes are regularly in disequilibrium does this mean that host related selection is causing specific regions of the genome to co-evolve? Finally, the apple race reportedly arose in the Hudson Valley, New York and subsequently spread across the rest of eastern North America. Is there any genetic evidence for this? For example, is the apple race less variable across its range than the hawthorn race as would be expected if the apple race owed its origin to just a single, or relatively few, founder events? Do peripheral apple populations possess alleles characteristic of hawthorn populations near the supposed home of the apple race in New York or are they genetically more similar to local hawthom populations, as would be predicted by the multiple shift hypothesis? Answers to all of the above questions bear directly on the evolutionary significance of sympatric host race formation in the R. pomonella group. In this Chapter, I report the results of an electrophoretic study of allozyme variation for hawthom and apple populations of R. pomonella from across the eastern United States and Canada. The findings indicate that significant genetic differentiation exists between hawthorn and apple flies across most of the range of R. pomonella. The same set of six loci are consistently responsible for host related differences, and five of these six loci show a pattern of geographic variation indicative of latitudinal allele frequency clines in the two host races. 60 Materials and Methods Flies were collected as larvae from infested fruit at ten paired feral apple (Malus pumila) and hawthorn (Crataegus mollis) sites across the eastern United States as well as from an apple site in Kentville, Nova Scotia (see Figure 3 and Table 12 for locations and descriptions of study sites). Sympatric site 5 (Grant, Michigan) represents the same apple and hawthorn populations I analyzed in Chapter 2. Likewise, flies surveyed from site 4 (Urbana, Illinois) were from the same populations, but were not the same individuals, that McPheron et al. (1988a) studied. Multiple year samples were collected for six of the ten paired sites (Table 12). At site 5 in 1987 and site 7 (Gas City, Indiana), larvae were dissected from infested fruit and were immediately frozen in liquid nitrogen for later electrophoretic analysis. Otherwise, we brought infested fruit back into the laboratory and allowed larvae to pupate in moist vermiculite. Pupae were sifted from the vermiculite and subsequently stored at 4° C to simulate winter diapause conditions. After five months, we removed the pupae from the cold and held them at 22° C, under a 15:9 hr. lightzdark cycle to terminate diapause. Eclosing adults were collected and stored at -80° C until they were analyzed electrophoretically. Standard horizontal starch gel electrophoretic techniques were used and are described fully in Chapter 1 and in Berlocher and Bush (1982). I stained for a total of 21 different enzyme systems and was able to resolve 29 allozymes (see Table 8 for a list of resolved loci and their abbreviations). Isozymes which migrated the nearest to the cathode were designated 1, the secOnd closest 2, etc. Alleles at each locus were numbered according to their relative anodal mobilities, with the most common allele at a locus 61 .hm.vv .vN.N¢ .nm.~v .mn.ov .Hnoov .H¢.N¢ .HN.nv .mo.ov .ON.Nv .mm.¢v .ho.m¢ In 4 o.” :2. 5% =.< o.m :3 a.» mi m4 :3 56 we 16 *3 n6. 2.4 3% :3 a3 m.< Aaxv mocuuuao mm mm.mm mm mm hm mo.vm bolvw mo mo.vm mm.vm mmtvm 3333333 «8:8 638m «62 £2328. 603.3 .98 «E8 .3 .85; .uflofia .9658 6mm: :65 .>.z .580 638.8 éa .3 .m.».z 9.30 .55 .38 .3 .3»: .3 .38 98 .38 .8 if .6? 6523 .m .998 .35 .3 £2: £22 £56 .38 rpm 5": .SH .235 .3958 .SH .35 .fiH 689.32 name .2. if .032 .ofldfifld .53 5.3x .033 .533 .33 :89. fig .5505 25 .3 m8— 8 €308 9: £55 803 3388 82. 03% Ba c.5532 223 27. REE u 8.3 66532": damn}. £350 93 8.8m 33:: E880 05 «8.8a ~336qu .x 3.. new“ wage—BU O H H o o o o o o o o o o O" N n v In ‘0 I‘ Q Os 3 i .2 035. 62 assigned a value of 100 and used as a standard (Note: The relative mobilities of electrophoretic alleles resolved for the 13 polymorphic loci are given in Tables 21-32 which appear after the Discussion section on pages 91-102). Significant deviations from Hardy-Weinberg genotypic expectation were determined by G-tests. Alleles were pooled, if required, so that the expected frequency of all genotypic classes were >1. The Levene correction (Spiess, 1977) was applied if sample sizes were <100 or if genotypic classes had expected numbers <1. G-contingency tests were used to test for allele frequency heterogeneity between host populations and across sites and years. Alleles for a locus were pooled, when necessary, to ensure that each cell in the G—contingency test had an observed number 2 5. F-statistics were calculated by the method of Weir and Cockerham (1984) with variances estimated by jackknifing over populations, loci or years. Corrections for unequal sample sizes in Weir and Cockerham's method can result in negative FST values. In these instances we report Fs'r as 0. Correlation coefficients (rAB) were calculated between pairs of non-allelic genes based upon Burrow's disequilibrium values (Cockerham and Weir, 1977). To test the null hypothesis rAB=O, the correlation coefficients were 2 transformed to approximate a normal distribution with variance: ’22 = l /n-3. Arcsine transformed allele frequencies for apple and hawthorn populations were linearly regressed against latitude for the ten paired sites (Note: At sites with multiple year samples I transformed the mean allele frequency for the population averaged across years). I tested the null hypothesis that the regression coefficient (i.e., slope of the linear regression 63 equation) = 0 by ANOVA using F—tests. Curvilinear regressions were also performed based upon second order polynomials but F-tests revealed that they did not significantly improve the fit of regression lines compared to first order equations. Results Thirteen of the 29 allozyme loci resolved were polymorphic (frequency of the common allele 5, 0.95, Table 8). A Mendelian mode of inheritance has been established in R. pomonella for 12 of these polymorphic loci with Aat-I being sex-linked (see Chapter 1; Berlocher and Smith, 1983). Excluding Aat-I , 30 significant deviations from Hardy- Weinberg equilibrium were observed in 670 tests (Tables 21-32). The significant deviations displayed no regular pattern and were fewer than the number expected due to random type I error (30 compared to 33.5). Genotypic frequencies for autosomal loci were, therefore, generally in Hardy-Weinberg equilibrium within both apple and hawthom populations. This was not true for the sex-linked locus Aat-I in that 27 out of 33 populations showed significant departures from equilibrium proportions. However, when females (which are the homogametic sex in R. pomonella; see Chapter 1) were considered separately from males (which are hemizygous and therefore should not be included in calculations of Hardy- Weinberg equilibrium), females were generally in Hardy-Weinberg equilibrium for Aat-I (2 significant deviations out of 33 total tests). R. pomonella flies infesting apples were genetically different from those infesting hawthoms. Although no fixed allele difference was found for any of the 29 loci resolved, significant allele frequency differences were 64 observed between apple and hawthorn populations at nine of the ten paired collecting sites (Tables 13, 21-32; Note: Paired sites 1-10 are organized by latitude from north to south in these three Tables). Only site 8 near Kenton, Ohio did not differ significantly for at least 1 of the 13 polymorphic loci analyzed. Host associated genetic variation displayed a distinct dichotomy. Six loci (Me, Acon-Z, Mpi, Die-2, Aat-Z and Had) consistently showed significant host related differences (60 out of a total of 113 G-contingency tests were significant for these six loci; Table 13). In contrast, the remaining seven polymorphic loci analyzed in the study had much lower levels of inter-host variation. Only 10 out of 113 tests were significant for these seven loci and there was no trend evident in either the loci or alleles involved in the significant differences. Inter-host differentiation was stable over time for the six sites where multiple year collections were made. At site 5 (Grant, Michigan) for instance, Me, Acon-Z, Mpi, Dia-Z and Aat-Z all showed significant allele frequency heterogeneity between apple and hawthorn flies over a 4 year period from 1984 to 1987 (Table 13). The only other locus which varied significantly between host populations at this site was Had in 1985. Allele frequencies within apple or hawthorn populations fluctuated across years, however (Table 14). This was especially true for hawthom flies in which 16 out of 83 G-contingency tests indicated significant heterogeneity over time (Table 14). Intra-host temporal variation did not overlap in frequency or compare in magnitude to inter-host differences, however. F-statistics calculated across years for Me, Acon-Z, Mpi, Did-2, Aat-Z and Had at site 1 and site 5 document this point (Tables 15, 16). Overall FST values for these six loci across years between host populations 65 .28... Eng 10 Sod w m :5 .86 .v. m 3 mod w m .. «AHV34 «a a on v «Advau4 .ecaavwmm «a pm h III mm m ccAHVnUH « «ea mm «Advanm « a *«e «« vm n 4 mm £18789 .1 a: mu OH is «a; 4 mm «Aavdrunw «a «as ea w a«AHV>04 .cadvatuna «a «a has «a «a; mm m IIIII can use tea «a; «at no IIIII ace «*4 «a: «a; «a; ma «a sea is; «a: «a: cue mm 4% «ea ace «44 at: we m «a aaa «a; «a; as« «a; mo ¥¥¥ i Gm N It!!! a; «as see eye on «Advaluma a «4 he; mm a «a vm H ”83333342 Egg «82.323 5 :03» 2a 98. c8 Song .6 mop—won 63.853 .x we Sagan—on 9.585 03% 93 50532 5223 mama gm 3 bmoeowohso: 5:395 22? he 33 xocowauaonué .mm 038. .53 593580 nu H86 w m :5 .86 w m .3 mod .v. m a «a Amvnlu2.1m3~|§ 2213 25:3 :13 3:13 .25 3.3 :13 58.335.— a: avalancfimv >233: 3.3 «lama .513 33 2.3 «a 83 :13 e: 83 :13 a? gas «135% .33. 33 Hanna 3 £3332 4 n I 3.83.98 4 3 333.com is 1: a 4 D «332 13 «13 «13 :13 :13 x .313 a m .13 1.3 13 m «3 a ~ «1.3; as m «SEE a a lag rial Ilmuumal Ilnumudl Jail lug twnlu g g g fix: g @8055?“— 5 coin 8a sun. com 8895 .3 monumen— aémm 93 E3» 828 bmocoweao: 5:033 0.23 .8:.nu£ .83 $8. accom=u590 .3 03am. 67 .5005.» 0080M 38080. Ea 005088 .8: 803.3 50080.5 05 .3 058.80.80.— 88805 am > x 88: 8283030 05 E 000205 0.3 «coma—anon 0:50 05 c.6532 £3 :05: 00:0; 5mm 08 8 «80> x 0.8: 0 .8. as 2.88 £38. - 838 .5680 a .050» ~05 08830 000538.. - 83300 Bataan a n0d0.0 H «0N0.0 0N00.0 H ¢m00.0 n5N00.0 H 0000.0 ~v00.0 H mn00.0 nnH0.0 H 0000.0 HmH0.0 H nm00.0 0n00.0 H 5m00.0 50H0.0 H N500.0 5N00.0 H 0000.0 H000.0 H «500.0 5000.0 H 0000.0 5m00.0 H 0000.0 m000.0 H 0000.0 mH00.0 H 0000.0 5500.0 H 0000.0 n¢H0.0 H va0.0 0500.0 H «500.0 NNH0.0 H N¢00.0 38.0 H 88.0 88.0 a 38.0 038.0 a 88.0 flag at; a .3 .Asmcoama .832an _ 0:» .0 83.238 E0532 0.3 038 3.. «.80» $800 0032, 5mm «:02 «:08 E: «.82 .n g 030.5 68 80.35. 00800 .8880. as. 8.0.098 .09. 503.2. 80800.... 0... ..o 03.083080. 0.5.0.8... a. > x 86.. 83.0.8.8 0... a. 008.0... 0.... 80.3.2.9. 0.0.... .05. E052... 59. :0...» 00...; .00". 0.... 8 80> x 0.83 0 .8. .25 28...... 0.3.8. - 8.330.. .528 .. 83>. .96 0.8.8 00.5.8. - 8.830.. 888.0 a 00.3.0 H 5500.0 0v00.0 H 0000.0 ~000.0 H 5.30.0 .0395 0000.0 H 030.0 #0006 H 0000.0 0000.0 H NN00.0 3 0000.0 H 0000.0 0000.0 H 0000.0 0000.0 H 0000.0 Nina 0500.0 H 5900.0 0000.0 H 0500.0 0000.0 H 0N00.0 "IQ—d 00.3.0 H «000.0 0000.0 H 0000.0 0000.0 H 0000.0 Hg 00....0.0 H 300.0 0000.0 H 0000.0 0000.0 H 0000.0 05 88.0 0 886 286 0 $8... 88... a 286 a: a Hung g 0.8. £33qu ..§m...0§..§.0. n 0.... .0 83.0.2.9. c.8538 .08 0.0% 8.. 80.. 08.60 00...? km". .0. 0.8.... 69 were over 4 x greater at both sites 1 and 5 than values calculated for hawthorn populations alone and 20 x greater than those for apple flies (Tables 15, 16). Geographic variation was observed among both hawthorn and apple populations across the eastern United States and Nova Scotia. G- contingency tests indicated significant geographic variation for Me, Acon- 2, Mpi, Did-2, Aat I & 2, Had and Pep-2 for both host races (Table 14). Acy also varied significantly among apple populations. F-statistics were calculated to quantify the degree of intra-host geographic variation (Table 17). Only data from a single year for hawthorn and apple populations from each of the ten paired collecting sites were used in the calculations (1986 being chosen whenever possible, with 1985 results used for sites 2 and 9 and 1987 data for site 7). Overall FST values for all 13 polymorphic loci were significantly greater than zero for both apple (0.0117 i 0.0054) and hawthorn flies (0.0450 :3; 0.0208) as indicated by standard deviations derived by jackknifing over loci. Geographic differentiation was much greater among hawthorn than apple populations, however, as evidenced by the nearly 4 fold larger overall Fs'r value for hawthorn flies (see above). Substantial heterogeneity existed among loci in their Fs'r values for populations across the eastern United States (Table 17). For example, Me, Acon-Z and Had all had a Fs'r of over 0.100 for hawthorn flies while Pgm, Acy, Ak, Idh and Aat-I all had a Fs'r of under 0.005 among the same hawthorn populations. In fact, the same six loci (Me, Acon-2, Mpi, Did-2, Aat-Z and Had) which consistently showed host related differences also displayed the highest levels of geographic differentiation. If just these six loci are considered, apple populations had a 1351‘ of 0.0166 i 0.0107 while hawthorn populations had a Fs'r of 0.0821 i 0.0383 (Table 17). In 70 Table 17. PST values across apple and hawthorn populations calculated by the method of Weir and Cockerham (1984). hkgmfiveIfirrvahusaucreponedas(10000. 1.9.99: W W via-2 0.0042 1 0.0049a 0.0676 1 0.0404 Ant-2 0.0020 1 0.0021 0.0122 1 0.0067 Me 0.0173 1 0.0094 0.1916 1 0.0557 Acon-Z 0.0378 1 0.0172 0.1225 1 0.0388 Hpi 0.0140 1 0.0063 0.0426 1 0.0185 Had 0.0208 1 0.0066 0.1098 1 0.0421 Pep-2 0.0137 1 0.0068 0.0063 1 0.0043 Idh 0.0000 1 0.0019 0.0033 1 0.0069 Ak 0.0000 1 0.0034 0.0016 1 0.0008 Pgm 0.0000 1 0.0027 0.0024 1 0.0031 991 0.0062 1 0.0070 0.0076 1 0.0078 Aat-l 0.0197 1 0.0150 0.0006 1 0.0082 Acy 0.0024 1 0.0029 0.0013 1 0.0025 A11 13 loci 0.0117 1 0.0054b 0.0450 1 0.0208 First 6 loci 0.0166 1 0.0107 0.0821 1 0.0383 Last 7 loci 0.0061 1 0.0042 0.0036 1 0.0019 a Standard deviation - jackknite estimate over populations b Standard deviation - jackknite estimate over loci 71 contrast, F ST values for the remaining seven polymorphic loci were 0.0061 ;I-_ 0.0042 for apple flies and just 0.0036 :1; 0.0019 for hawthorn flies. Despite the observed spatial diversity among R. pomonella populations, no obvious relationship existed between the geographic location of a population and the number of electrophoretic alleles scored for the population. Of the 11 sites we analyzed, site 10 (Amherst, Massachusetts) was located the closest to the Hudson Valley, New York, the supposed source of the apple race. Apple infesting flies were, in fact, already present in western Massachusetts at the time of the first published account of the new race by Ward in 1866 (Figure 3). Fifty-five electromorphs were observed in the apple population on the campus of the University of Massachusetts at Amherst for the 13 polymorphic loci resolved in this study. In comparison, apple populations near the northern and southern ends of the flies distribution in Door County, Wisconsin (site 1), and Urbana, Illinois (site 4), had 59 and 50 alleles, respectively, not appreciably different from the number scored at site 10. In fact, the number of alleles detected for apple populations 1, 10 and 4 was proportional to the sample size at each site (Tables 21 -32). Furthermore, apple populations at all three of these sites contained either more or the same number of alleles as sympatric hawthorn populations (55, 53 and 50 for hawthorn populations 1, 10 and 4, respectively). The apple population at Kentville, Nova Scotia (site 11), did show a reduced amount of genetic variation (39 electromorphs). However, Acy was not scored for site 11. Acy had an average of four alleles in apple populations so the total number of alleles for Kentville should be adjusted to approximately 43. In addition, the sample size at site 11 (39 individuals) was smaller than that of any other population analyzed, which reduced the likelihood of detecting rare alleles 72 at the Kentville site. I also do not have a paired hawthorn population for site 11 to verify whether the fewer number of alleles present in the Kentville apple population is due to a general reduction in genetic diversity for R. pomonella in this portion of its range. It therefore appears that if a population bottleneck did occur during the formation of the apple race, then either it was not severe enough to greatly reduce genetic variation in apple populations or subsequent gene flow from hawthorn populations has restored the original level of allelic diversity to the apple race. Genetic variation was not randomly distributed among either apple or hawthorn populations across the eastern United States, however. Linear regression analysis revealed significant relationships between latitude and allele frequencies for M e1 00 , Acon-295, Mpil 00, Had] 00and Pep-2100 across both host populations and for Did-2100 across hawthom populations (Table 18). Except for Pep-2100, the absolute value of the slopes of the significant regression equations were always greater for hawthorn than apple flies (Table 18). For Pep-2 100 the slopes were essentially the same between the host races (Table 18). Hawthorn flies, therefore, displayed steeper north-south frequency clines for M72100, Acon-295, Mpi100, Did-2 100 and Had 100 than apple flies; a result indicative of the higher levels of geographic differentiation observed in the hawthorn race. The geographic pattern of inter-host differentiation is due in large part to the differences in the slopes of latitudinal allele frequency clines between hawthorn and apple populations. Figure 4 graphically depicts the relationship between latitude and the average arcsine transformed allele frequency for Mel 00, Acon-295 , Mpi3 7, via-21 00 and Had100 for 9 of the 10 paired sites in the eastern United States (Note: Site 8 is not included in Figure 4 because data for Did-2100 are missing at this site). Inter-host 73 ummuuu c>oz4 Hoo.o v m «4. Ho.o w m 44 mo.o w m e een.o « oe~.o ”no.6 ene.o a H>H.ou moo.o ooH >04 coo.” « oo~.H em~.o «66.6 « emo.ou ooo.o coat H-084 nem.o « noo.ou aoo.o mme.o « mmm.o oea.o cod and oo~.H « oon.e «enoo.o pom.o « oom.a emmm.o cod on: vee.o u oov.au emem.o mo¢.o « ooe.au eemae.o cod «teem can.o « oo.~u eemoe.o «Hm.o « ooe.au emom.o ooH an: ooH.H “_ooe.o eeeono.o cod.” « con.n eanm.o mm «.2004 oov.a « oom.e eemne.o m~¢.o a oom.~ eeeaam.o ooH a: ann.o u e~v.o ~ea.o eon.o u ~nn.ou cmo.o ooa sum mmm.o a oun.ou ovo.o nmn.o « omm.o eH~.o cod xc aan.o « «He.ou can.o «om.o « noo.ou ooo.o ooH ccH mno.o n nae.on onH.o mm¢.o a e~e.on ~mo.o cod muuoc oo~.H a ooe.n eamm.o omv.o “ eme.o me~.o ooH «raga Aqualung Jr 44.413 Iiiu _ 30.3%..” WQOHMMAQQGQ GHOQMNMN WQGHHMHQQGQ Manda 6 Bob €25 consume 88:2 93 86:35 20% 35.8833 583 «o $ng comedy—we Soc: .«o 938% do mono—m .66 336803 commmaoe Mo 80332. 588:»? Bacon Exam—33‘ donate, 0:05» 3:33ch 52% 50532 93 03% Ed 8 05 888 .m— 03.; Figure 4. 74 Average arcsin transformed allele frequency for M e1 00 , Acon-295 , Mpi3 7, Did-2100 and Had] 00 for paired apple and hawthom sites plotted against latitude. Site 8 (Kenton, Ohio) is not included because data for Dia-2100 are missing for this site. The linear regression equation is given along with the amount of explained variation (r2) and probability levels (_13) for the ANOVA F-tests of the null hypothesis that the slope of the regression line = 0. 75 MDDHFS .o v .m 6 .¢ 6 .m v .N v i! u 0 2920 HQDHWTEA as. .35 .32 .353. .85 52335. mzmw nmzmommzés 253:. .34 be. 0 EoSBmI K .v oasmam mm 60 .mm 10v .mv AONEHOEEH ENSE) .om .mm 76 differentiation is greatest at northern sites where allele frequencies for Memo, Acon-295, Mpi3 7, Did-2100 and Hadloo are generally higher in hawthorn than apple populations (Fables 21-25). At centrally located sites, frequency clines for the two host races converge and apple and hawthorn flies become less genetically distinct until at site 8 (latitude 40° 39') no locus shows significant inter-host heterogeneity (Table 13). Host associated allele frequency differences appear again at southern sites. However, in the south, frequencies for M e1 00 , Acon-295, Did-21 00and Hadlo0 tend to be lower in hawthom than apple populations, the reverse of what was found for northern populations. The latitude of a site is, therefore, an accurate predictor of the magnitude and pattem of inter-host differentiation. The fact that almost all of the loci showing host associated differences also co-vary significantly with latitude suggests that allele frequencies for these loci may not be evolving independently in fly populations. Me, Acon- 2, Mpi, Act-2, Did-2, Had and Pep-2 do, in fact, map to only three different regions of the genome (Chapter 1; Berlocher & Smith 1983). Dia-2 and Aat-Z are located 3.2 centimorgans apart on linkage group I while Me, Acon-Z and Mpi are very tightly linked on linkage group II (no recombination was observed among Me, Acon-Z and Mpi for 162 test cross progeny scored in Chapter 1). Finally, Had is on linkage group [[1 at a distance of 23.9 centimorgans from Pep-2. The linkage relationships for Me, Acon-Z, Mpi, Did-2, Aat-2, Had and Pep-2 suggest that hitchhiking effects and/or epistatic genetic interactions are occurring among loci. To further examine this possibility, I calculated correlation coefficients between all pairs of non-allelic genes for these seven loci based on the method of Cockerham and Weir (1977). 77 Significant disequilibrium was found between M e/Acon-Z, Me/Mpz', Acon- 2/Mpi, Aat-Z/Dia-Z and Had/Pep-Z for most apple and hawthorn populations (Tables 19 and 20). The patterns of disequilibrium between non-allelic genes were the same both within and between the host races throughout the eastern United States and Nova Scotia. Allele frequencies for linked loci within each of the three genomic regions showing inter-host differentiation are, therefore, co-evolving. Linkage disequilibrium appears to exist only within chromosomal regions displaying host associated variation, however. Idh maps 7.1 centimorgans away from Dia-Z and 10.3 centimorgans from Aat-Z on linkage group I (Chapter 1). Nevertheless, Idh was in equilibrium with Did-2 in all 19 tests conducted. In addition, allele frequencies for Idh did not co-vary significantly with those for either Ak or Pgm which are located 8.9 and 38.7 centimorgans, respectively, from Idh on the opposite side of linkage group I as Dia-Z and Aat-Z (Chapter 1; Berlocher and Smith, 1983). Interactions between unlinked loci were also not readily apparent from the correlation coefficients. Only 24 out of 627 correlation coefficients were significantly different from zero between pairs of unlinked loci for apple flies while 28 of 590 tests were significant for hawthorn flies (data not shown). No pattern was observed for either the loci or alleles involved in the significant tests. Allele frequencies for unlinked loci, therefore, appear to be evolving independently in both hawthorn and apple populations. .uuco.o_»eooo co.u0.0aeou veeao~ucccu u .6 anon.“ >3 uec.0ceuoe 00:00.».co_m 000.0 N a sec 'o.o w u .6 mo.o w u o 78 ...on.o ....m.o ...e¢.o ...e..o ..ne.o on.o oo,\oo. ~.eee\u.= .___ 00¢~.0 o~.0 00~.0 00n~.0 0cn.0 no.0 moxhn «v.0 «0.0. 00.0 50.0 0nn.0. 00.0. 00p\00p 000—n.0. pp.0. 0-.0. op.0. 000¢.0. e~.0. m0\00p ~.cou<\_ax 00n~.0. mp.0 0—~.0. hp.0. 00v¢.0u 0pe.0. 00—\00p .a:\ox m—.0 ”0.0 s—.0 90.0. n0.0 0~.0 00p\00— 00.0. 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No.0 000.0. 0Nn.0 n~.0 0N.0 00005.0. 00.0. a... oo—xoop 00550 oowxoop 00x00— oo—xoop 00'500— 00—500— 005005 00p\00p 05500p 00\00p pwxoop uuqqqqa ~.aoa\u-= .___ ~.ceu<\.ax .axxex ~.coo<\o: .__ ~.un<\~.0_0 .— quua .nuauqu 000uc.4 3.83 .8 use... 82 Discussion We can now answer many of the questions about geographic variation posed in the introduction to this Chapter. First, is genetic divergence widespread between apple and hawthorn infesting populations of R. pomonella? The answer to this question is yes. Significant allele frequency differences were found at 9 out of 10 paired apple and hawthorn sites examined across the eastern United States. Host related differentiation is, therefore, not just a local or regional phenomenon in R. pomonella, but is common across eastern North America. Second, do genetic differences between apple and hawthorn populations display any patterns or trends? Yes, the same set of six loci (Me, Acon-Z, Mpi, Did-2, Ant-2 and Had) are primarily responsible for inter-host differentiation. In addition, five of these six loci show latitudinal allele frequency clines for the host races. Furthermore, the six loci displaying host associated variation are not randomly distributed throughout the genome but, instead, map to three specific chromosomal regions. Significant linkage disequilibrium exists in natural fly populations between linked, non-allelic genes within each of these three regions (Had, which maps to a separate chromosome from the other five loci, was tested against Pep-2 which is located 23.9 centimorgans away from Had on linkage group III), but genetic interactions between chromosomes are not readily apparent from the data. It therefore seems that only a limited number of genetic changes at specific locations in the genome are involved in the initial host divergence process. Although I have probably not identified all of the regions responsible for differentiating host populations, it appears that a 83 " genetic revolution" involving a restructuring of interactions across the genome has not accompanied the shift(s) of R. pomonella to apples. Does the pattern of geographic variation for R. pomonella point to possible factors differentiating the host races? Theoretical models of sympatric speciation (Maynard-Smith, 1966; Bush, 1969a, 1975a; Diehl and Bush, 1989) stress that habitat specific mating is a key trait for the formation of new host races. In Chapter 2, I showed that adult flies do not randomly migrate between different species of host plants but, instead, tend to attack the same species of host plant that they previously infested as larvae (larval conditioning has not been found for R. pomonella, although adult conditioning has been documented; Prokopy et al., 1982). Because courtship and mating in R. pomonella occur almost exclusively on or near the fruits of the host plant (Prokopy et al., 1971, 1972), these differences in host preference produce genetically based, pre-mating barriers to gene flow. There is, consequently, little doubt that differential host utilization by hawthom and apple flies results in a system of positive assortative mating which helps to maintain genetic variation between the host races. Two observations make it unlikely that any of the six loci displaying inter-host frequency differences are directly involved in the host recognition process, however. First, five of these six loci also show latitudinal allele frequency clines within the host races. This is not what would be expected for genes encoding host preference behaviors, traits which should be relatively invariant across the range of a host race. Second, the allozymes we resolved in this study catalyze steps in general metabolic pathways. Me and Acon, for instance, are part of the TCA cycle while Aat converts glutamate into oxaloacetate which is used to replenish TCA intermediates. Mpi facilitates the entry of mannose into glycolysis and 34 Had and Dia are both involved in fatty acid biochemistry. Had transforms acetoacetate to D-beta-hydroxybutyrate during ketosis while Dia is a member of a non-phosphorylating electron-transport chain which is active during the desaturation of fatty acids. It is improbable that general metabolic enzymes such as Me, Acon, Mpi, Dia, Aat and Had directly affect behaviors associated with proper host recognition. There is no a priori reason to presume, however, that any of the allozymes showing inter-host variation are directly under selection, however. Perhaps a more reasonable initial assumption is that these loci are linked to genes being differentially selected for in the host races and that selection is strong enough to produce hitchhiking effects for linked genes. Inversions could play a contributing role in the co-evolution of such linked arrays of genes by reducing recombination among loci sufficiently for selection to cause genetic hitchhiking. Unforttmately, the poor quality of polytene chromosome preparations in R. pomonella prevent us from directly testing the inversion hypothesis. Regardless of the form or nature of selection, its effects do not appear to be uniform across the range of either apple or hawthorn flies. Except for Act-2, allele frequencies for all loci showing host related differences also co-vary significantly with latitude. This result suggests that the environmental factor(s) responsible for selection is in some way correlated with latitude. Furthermore, because allele frequency clines are steeper among hawthom than apple populations, apple flies must either be buffered from or constrained by environmental conditions to a greater extent than hawthorn flies. As a consequence, geographic variation is reduced among apple populations compared to hawthorn populations. 85 Natural selection is not, of course, the only possible factor influencing the pattern of geographic variation in the host races. A genetic bottleneck during the founding of the apple race could also help explain why apple flies are less genetically variable than hawthorn flies. However, two points argue that natural selection is more important than stochastic processes in shaping the overall genetic structure of R. pomonella populations. First, not all polymorphic loci show reduced amounts of geographic variation among apple compared to hawthorn populations. The overall FST value for Idh, Ak, Act-1, Pgm, Pgi, Pep-2 and Acy across the eastem United States is actually higher for apple (0.0061 i 0.0042; Table 17) than hawthorn flies (0.0036 i 0.0019). It is, therefore, only those loci which show host associated differentiation which are less variable in the apple race. Allele frequencies for the six loci displaying inter-host variation are not homogeneous among apple populations, however (Table 14). In fact, Me, Acon-Z, Mpi, Aat-Z, Did-2 and Had are among the most geographically heterogeneous loci for the apple race (Table 17). Stochastic processes such as genetic drift and/or founder events are expected to have roughly equivalent effects on neutral genes. The diversity of geographic patterns observed among loci for apple and hawthom flies is, therefore, not predicted by neutral theory and is strongly suggestive of selection. Second, allele frequencies for Acon-Z indicate that at least some gene flow may occur between the host races. Acon75 is a relatively rare allele usually found at frequencies of 0.05 or less in fly populations (Table 22). However, at site 6 (E. Lansing, Michigan) and to a certain extent at site 5 (Grant, Michigan), Acon75 frequencies are elevated in both hawthom and apple populations. Even low levels of gene flow between local apple and 86 hawthorn populations would homogenize gene frequencies for neutral alleles. This may account for the limited amount of geographic variation observed for polymorphic loci not showing host related differentiation and for why apple and hawthorn populations share even the rarest alleles in common (Tables 21 -32). However, inter-host gene flow does not explain the existence of or differences in latitudinal frequency clines observed for apple and hawthorn flies. If the frequency clines in the apple race were only the result of a genetic bottleneck followed by local gene flow from hawthorn populations, then allele frequencies for apple populations should converge with those of the hawthorn race over time. However, inter-host differentiation was consistent across years at sites where multi-year collections were made (Table 13). This result argues that differential selection is strong enough to offset local levels of inter-host migration and that selection is largely responsible for both the existence of, and differences in, allele frequency clines for apple and hawthorn flies. But what environmental factor is responsible for selection in R. pomonella? Several lines of evidence suggest that ambient temperature is an important environmental factor differentially affecting apple and hawthorn flies. Because R. pomonella is univoltine and life expectancy of adults is only 3.6 weeks in the field (J. L. Feder, pers. obs.; see also review by Boller and Prokopy, 197 6), flies must eclose as adults at times closely matching the fruiting phenologies of their host plants. Fruits of domestic apple varieties favored by R. pomonella generally ripen and abscise 3-4 weeks earlier than those of hawthoms. "Temporal windows" for infesting apples and hawthoms are, therefore, different. Ambient temperature is, of course, correlated with latitude and has a direct effect on the timing of fruit maturation. Temperature has also been shown to be a key determinant in 87 initiating, maintaining and terminating diapause for R. pomonella (Prokopy, 1968; Reissig et al., 1979). Apple and hawthorn flies could, therefore, be differentially adapted to temperature as an indicator of the phenologies of their respective host plants. The distribution of adults and larvae does, in fact, follow the fruiting phenologies of apples and hawthoms. Early in the season flies are abundant on ripe apples but scarce on immature hawthoms while the reverse is true later in the season when hawthoms ripen. Apple and hawthorn flies also show genetically based differences in the timing of adult eclosion with apple flies emerging significantly earlier than hawthorn flies under controlled laboratory conditions and in the field (Diehl, 1984; Smith, 1986, 1988; Feder et al., manuscript in preparation). The temperature/development hypothesis also provides a possible explanation for latitudinal variation in R. pomonella. If larvae develop too early in the summer (a potential problem for populations in southern latitudes), then at least part of the population will not diapause. Instead, these flies will emerge as a second generation of "non-diapausing" adults in the fall when host fruit is no longer available. Almost all larvae do, in fact, fail to diapause when held at a constant temperature above 28° C and a lightzdark cycle of 17:7 hr. (Prokopy, 1968) and second generations of flies have been reported in field studies (Caesar and Ross, 1919; Porter, 1928; Phipps and Dirks, 1933b). Alternatively, if larvae deve10p too slowly then they are exposed to predators and parasites for a longer period of time and run the risk of freezing to death during the first frost. Freezing is a major problem for flies in the north as we have commonly observed frozen larvae in fruit toward the end of the field season. Clinal variation can, therefore, be due to the premium placed on rapid larval development in northern 88 populations compared to slower development and/or constitutive diapause in the south. Latitudinal variation for developmental traits have, in fact, been reported for a number of other insect species (Istock and Weisberg, 1987; Scriber and Hainze, 1987). Egg transplant experiments performed in the laboratory under controlled nutritional and environmental conditions would provide a direct test of whether southern R. pomonella have slower developmental rates or are more prone to diapause than northern flies. A puzzling observation is still unaccounted for by the temperature/development hypothesis. Why do hawthorn infesting flies show greater north-south genetic variation than apple flies? One possibility is that some important physiological, chemical or phenological characteristic varies more with latitude for hawthorn than apple trees. For example, hawthorn trees may show greater north-south diversity in the period between or timing of fruit maturation and abscission than apples. Apples are, after all, a commercially cultivated fruit crop introduced from Europe. Consequently, apples should be less genetically and phenotypically variable across their range compared to native hawthorn species. The relative nutritional value of hawthoms and apples may also be an important consideration. Evidence indicates that hawthoms provide a better host- fruit environment for R. pomonella larvae than apples, as larvae of both apple and hawthorn origin exhibited greater survivorship in hawthorn fruits in egg transplant experiments (Prokopy et al., 1988). These results are not surprising since hawthoms are the native host of R. pomonella. Larval development may, therefore, be inherently faster in hawthorn fruits. As a result, the failure to diapause could be as much, or more, of a problem for hawthorn flies than apple flies at southem latitudes despite the later maturation time for hawthorn fruits. Reciprocal larval transplant 89 experiments performed in the field between different hosts using apple and hawthorn origin flies from northern and southern latitudes would help resolve why allele frequency clines are steeper in the hawthom than in the apple race. The validity of the temperature/development hypothesis hinges, of course, on a relationship between developmental rates and the allozyme loci showing latitudinal variation. Preliminary data indicate that such a relationship does exist as allele frequencies for Me, Acorn-2 and Had correlate with the timing of adult emergence for hawthorn flies (Feder et a1 ., manuscript in preparation). Further classical and quantitative genetic experiments are needed, however, to clarify the exact relationship Me, Acorn-2 and Had (or linked genes) have with development in R. pomonella. Secondary contact could also account for allele frequency Clines in R. pomonella. Northern hawthorn populations may have become isolated and genetically differentiated from southern populations in refugia during pleistocene glaciations. However, the secondary contact hypothesis has no supporting data and it is much more likely that R. pomonella and their Crataegus hosts recolonized northern latitudes from the south following the retreat of ice sheets 10,000-20,000 years ago. In addition, secondary contact does not account for the frequency clines in the apple race and why these clines are more gradual than those existing for hawthom flies. As we discussed earlier, our results strongly suggest that differential selection is occurring both within and between the host races and is largely responsible for the observed pattern of allele frequency Clines. Finally, a genetic survey of hawthorn populations across latitudinal transects in the Midwest (see Chapter 4) revealed that allele frequencies for Me and Acon-Z co-vary with irregularities in local thermal conditions. This result agrees with the 90 temperature/development hypothesis and is not readily explained by secondary contact. Another question I posed in the inu'oduction is whether the geographic pattern of genetic variation is indicative of the origin(s) of the apple race? Unfortunately, the results of this study are ambiguous with regard to whether the apple race formed from a single or multiple host shifts. The reduced amount of geographic variation for apple flies is superficially consistent with a genetic bottleneck occurring during a single or relatively few colonizations of apple by R. pomonella. However, the clinal pattern of geographic variation indicates that differential selection occurs across the range of the apple fly. Selection is a complicating factor which makes it difficult to pinpoint a "genetic origin" for the apple race. In addition, gene frequencies for Acon-Z indicate that at least some gene flow may be occurring on a local scale between the host races. Gene flow between apple and hawthorn populations would further obscure any traces of the genetic origin(s) of the apple race and could account for why even peripheral apple infesting populations contain roughly the same number of electromorphs as hawthorn or centrally located apple populations. A possible analytical approach to investigating the origin(s) of the apple race would be to construct "phylogenetic networks" among apple and hawthorn populations based upon pairwise genetic distance measures between populations (for a review of this subject see Felsenstein, 1988). If the apple race formed from a single host shift then apple populations should cluster together on the network. Alternatively, if the multiple shift hypothesis is true then local apple and hawthom populations should generally be closer together on the network than geographically distant populations of either race. Unfortunately, evolutionary models forming 91 the underlying theoretical basis for network building algorithms are based on the selective neutrality of genetic characters (Felsenstein, 1988), an assumption which is clearly false for the host races. Furthermore, several loci analyzed in this study were shown to be tightly linked (Chapter 1) and co-evolving (Chapter 2; Tables 19, 20), which violates the requirement for the independence of characters used to derive distance estimates (Felsenstein, 1988). One possible solution to the above problems would be to use only loci such as Pgm, Pgi, Ak, Idh, Act-2 and Acy which do not appear to be under differential directional selection in R. pomonella (although, of course, this does not rule out the possibility of stabilizing selection) and are in linkage equilibrium with one another. However, allele frequencies for these six loci are phylogenetically uninfonnative in the sense that they display very little variation both between and among apple and hawthom populations (Tables 13, 17), presumably due to the homogenizing effects of gene flow among populations. Genetic data therefore do not exclusively support or reject either the single or multiple shift hypotheses. In retrospect, it may be impossible to resolve this issue for the apple race probably may very well have originated and spread from the Hudson River Valley, New York, but, in the process of expanding its range into new areas, became subjected to repeated episodes of gene flow from local hawthorn populations. A critical issue not fully explored in the introduction is whether apple and hawthorn populations represent incipient species. The results of this study demonstrate that genetically differentiated host races can arise in sympatry. In addition, the R. pomonella group contains a number of sympatrically distributed sibling species specialized on different hosts, many of which are inter-fertile in laboratory crosses, yet remain distinct in 92 nature (Bush, 1966; Berlocher and Bush, 1982; Feder et al., in press; Feder and Bush, submitted). All of these observations are consistent with host shifts representing the initial step in the speciation process. However, significant geographic variation exists within both hawthorn and apple races. The pattern of geographic variation suggests that host races are adapted to local environmental conditions and do not evolve uniformly as single panmictic units across their ranges. Whether or not divergent evolutionary processes occur within host races is not central to the question of sympatric speciation, however. The important consideration is whether host races are distinct evolutionary entities. That is, does the shift of R. pomonella to apples ensure that apple and hawthorn races are on separate evolutionary pathways. If the processes occurring within one race have little or no effect on evolution in other races, then host shifts will generate potential species. To determine whether host races are distinct evolutionary units requires characterizing levels of effective gene flow between hawthorn and apple populations. Although not an easy task, mark-recapture and larval transplant experiments are possible. A series of mark-recapture studies at sympatric sites along a latitudinal transect would determine whether host fidelity is constant for apple and hawthorn flies throughout their respective ranges. Larval transplant experiments at the same sympatric sites as the mark-recapture studies would establish survivorship levels for the offspring of inter-host migrants. Taken together, the results would provide a quantitative estimate of effective gene flow between apple and hawthorn races. Site 8 (Kenton, Ohio) documents the need for additional studies quantifying inter-host gene flow. No genetic differentiation was found 93 between hawthorn and apple flies at this site. Migration of adults between apple and hawthorn trees may, therefore, be sufficient to counter balance the effects of host associated selection. If true, then apple and hawthorn flies could represent a mosaic of both evolutionary distinct host races and freely inter-breeding populations across eastern North America. Alternatively, site 8 might be located in an area where selection pressures on the allozymes are similar for apple and hawthorn infesting flies. Host recognition differences may, therefore, still exist between hawthorn and apple flies at the site and inter-host migration be minimal. However, because none of the allozymes resolved in this study are likely to be involved in the host recognition process, host related polymorphism would not be detected. Further studies measuring inter-host gene flow are, therefore, critical for evaluating the fidelity of host utilization and the evolutionary significance of genetic differentiation between hawthorn and apple flies. . Even in the absence of direct experiments on gene flow, the allozyme results, plus recently obtained behavioral and emergence data, indicate that apple and hawthorn flies are partially reproductively isolated across a majority of their distributions. Prokopy et a1. (1988) have demonstrated that differences exist in the host acceptance behaviors of apple and hawthorn flies. Apple flies also terminate diapause and emerge as adults significantly earlier than hawthorn flies under controlled conditions and in the field (Diehl, 1984; Smith, 1986, 1988; Feder et al., manuscript in preparation). I have also been able to qualitatively document that adult flies do not randomly migrate between apple and hawthorn trees but, instead, tend to attack the same species of host plant they infested as larvae (Chapter 2). Finally, the results of the current electrophoretic study imply that 94 selection is acting differentially on flies infesting hawthoms and apples. 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I... ... .... 3J8: ..fi ... ... at jlfinj. .... .8850 ...... 88.88 62...: 80.88 0... 83.8.. £33528 .% ..o 8.3.338 A3 0...... a... E. 9853... 8.. 3. .0.. 80.8033 30:... .Nm 03.... Chapter 4 Gene Frequency Clines for Rhagoletis pomonella Host Races in the mid-Western United States Introduction Speciation, the rendering of one closed genetic system into two, is a fundamental process responsible for the evolution of life on earth. Unfortunately, speciation is a rare, time consuming event from the perspective of the biologist. Consequently, much of our understanding of the process is based on population genetic models and indirect analyses of closely related species. Mathematical models of speciation tell us what is theoretically possible but do not constitute proof that taxa diverged by a particular mode of speciation. Post hoc studies of species differences are also plagued by a major problem: It is extremely difficult to distinguish differences which were actively responsible for restricting inter- populational gene flow and initiating the divergence process from differences which arose subsequent to speciation. We therefore have very few examples directly documenting how populations become reproductively isolated from one another. Consequently, questions have been raised as to whether speciation occurs by "macro-evolutionary" mechanisms which qualitatively differ from "micro-evolutionary" 107 108 processes responsible for gene frequency changes within populations (Gould and Eldredge, 1977). The apple maggot fly, Rhagoletis pomonella, has a biology and natural history which makes it ideal for the study of speciation. R. pomonella is part of a sibling species complex of true fruit flies whose members are broadly sympatric in their geographic distributions across North America (Bush, 1966). Rhagoletis larvae are obligate internal parasites in the fruit of their hosts, with each species in the group being monophagous or oligiophagous for a different set of host plants (Bush, 1966). Adult females lay their eggs directly into the host fruit which they identify by specific visual, tactile and olfactory cues (Bush 1969a,b). Males are attracted by the same cues and courtship and mating occur almost exclusively on or near the fruits of the host plant (Prokopy et al., 1971, 1972). Because host recognition and mate selection are directly coupled in Rhagoletis, variation for host preference and host associated survivorship traits can act as genetically based, pre-mating barriers to gene flow. These considerations led Bush (1966, 1969a,b, 1975) to propose that speciation in the R. pomonella group occurs sympatrically and is initiated when flies colonize and adapt to new host plants. Verifying that sympatric speciation occurs in the R. pomonella group is a two step process. First I must show that traits adapting fly populations to different host plants are also responsible for reproductively isolating host associated populations. Second, I must demonstrate that these "host specific" traits can evolve within geographically continuous populations. In this regard, the recent shift of the species R. pomonella from its native host hawthorn (C rataegus spp.) to introduced, domestic apple (Malus pumila; Ward, 1866; Walsh, 1867) provides a unique ecological timeframe to 109 determine whether host specialization is sufficient to differentiate populations in the absence of geographic barriers to gene flow. Agricultural records suggest a probable origin for the apple infesting "race" in the Hudson Valley, New York, and document the apple fly's subsequent spread across eastern North America over the last 120 years (see Illingworth, 1912; 0' Kane, 1914; Bush, 1969a). Because domestic apples were introduced into the United States by European settlers (Chapman and Lienk, 1971), we have an upper limit of approximately 350 years for the age of the apple infesting form of R. pomonella. Of course, apple populations could conceivably have originally shifted from a host other than hawthoms. However, the only other reasonable native hosts in North America are five species of endemic crab apple (Pyrus angustzfolia, P. ' glabrata, P. ioensis, P. rivularis and P. coronaria), none of which support populations of R. pomonella (O'Kane, 1914; Porter, 1928; Bush, 1966). The reason for this is unclear but it has been suggested that the fruits of native crabs are too acidic and ripen too late for R. pomonella larvae to complete development before the onset of winter (O'Kane, 1914). It is therefore highly likely that hawthoms were the original host for the apple race. In the preceding Chapters, I have shown that sympatric apple and hawthorn populations of R. pomonella are genetically differentiated. Consistently significant allele frequency differences exist for six allozyme loci between sympatric populations of the two host races from across the eastern United States (Chapter 3). These six loci map to three different regions of the genome (Chapter 1) and linkage disequilibrium occurs in natural populations between non-allelic genes within each of these three regions (Chapters 2, 3). Allele frequencies for five of the six loci 1 10 displaying inter-host differentiation also co-vary significantly with latitude among both apple and hawthorn populations (Chapter 3). This suggests that north-south allele frequency clines exist for R. pomonella. However, the geographic analysis of eastern North America involved widely separated populations from a variety of different longitudes. Verification of clines therefore requires more detailed examination of fly populations collected along latitudinal transects. The purpose of the current study is two-fold. First, I want to describe the regional pattern of allozyme variation for R. pomonella in the midwestem United States. For instance, how extensive is geographic variation for R. pomonella in the Midwest? What levels of intra- and inter- host variation exist on a county by county basis within a geographic region? Do apple and hawthorn flies continue to show consistent genetic differences when examined on a much finer geographic scale than previous studies? Do allele frequency clines exist for R. pomonella? If so what is the nature of these Clines? Do all loci co-vary similarly with latitude or do loci differ in the shapes and configurations of their frequency clines? In short, the first set of questions addresses how genetic variation is partitioned within and between R. pomonella host races. The second aim of this Chapter is to explore the causal basis for any observed geographic patterns of variation. In other words, what factors are responsible for differentiating apple and hawthorn populations? Does natural selection act differentially between the two races? Do flies migrate randomly between different species of host plants? Do the same processes act unifomrly across the Midwest or do local conditions dictate the extent and pattern of genetic differentiation? Ambient temperature has been implicated as an important environmental factor influencing host-parasite l l l interactions for R. pomonella (Prokopy, 1968; Reissig et al., 1979). Is there any indication of this in the regional pattern of genetic variation? Finally, if gene frequency clines exist are they the result of differential selection (perhaps related to ambient temperature) or is secondary contact a possibility? The second set of questions therefore focuses on whether reproductive isolation in R pomonella is the direct outcome of ecological and behavioral adaptations resulting from host shifts. Materials and Methods Flies were collected from 34 different sites across the midwestem United States from 1985 to 1987 (Figure 5, Table 33). In general, the sites were organized into five north-south transects which ran from the states of Wisconsin through Illinois or from Michigan through Indiana (see Figure 5 and Table 34 for a map and breakdown of sites comprising each of the five latitudinal transects). At 28 of the sites, both hawthorn (C rataegus mollis) , and feral apple (Malus pumila) infesting populations were sampled. Host plants were sympatric (that is, separated by a distance of less than 100 meters) at 13 of the 28 paired locations. In only five instances were apple and hawthorn trees situated more than 4 km apart with a maximum distance of 8 km at site 8 near Parkerdale, Indiana. Six of the 28 paired sites (listed as 9, 15, 19, 20, 26 and 28 in Table 33) were the same apple and hawthorn populations that were analyzed in the earlier allozyme study of the eastern United States (these sites were designated 7, 5, 1, 2, 3 and 4, respectively, in Chapter 3). Three different strategies were used to collect flies. At a majority of sites larvae were dissected from fallen fruit in the field and immediately Figure 5. 112 Collecting sites for R. pomonella in the midwestem United States (see Table 33 for detailed descriptions of study sites). Solid lines indicate isothermal clines for growing degree days base 50°F (GDD). GDD values for Illinois and Indiana sites are given in parentheses. Dashed lines connect sites comprising each of the five latitudinal transects collected in the study. 0: site where the frequency of Acon-275 was > 0.100 for either apple or hawthom flies. G = site where the frequency of Acon-Z 75 was > 0.100 for both apple and hawthorn flies. A = site where the frequency of Acon-289 was > 0.200 for hawthorn flies and/or > 0.100 for apple flies. 113 2|00 20‘ (3506) Figure 5. 114» Table 33. Numerical designations and descriptions of field sites. Sites were generally organized into five latidudinal transects (see Figure 5 and Table 34). Latitude and growing degree days base 50°F are also given for sites. Distc Site.Iear.anatinn Stage? agar? 1xm1.Larirl.Gnn 1 87 Rodgers Ave, Clare, MI. L(L) A,H 3.2 43°40' 2380 2 87 MI. 20, Mt. Pleasant, MI. L(L) A,H 3.0 43°35' 2660 3 87 Alger Rd., Alma, MI. L(L) A,H sym. 43°25' 2650 4 87 MI. 27, Eureka, MI. L(Ad,L) A,H sym 43°06' 2720 5 86 Jolly Rd., Okemos, MI. RtR) A,H 1.0 42°41' 2570 6 87 F Dr., Eckford, MI. L(Ad) A,H sym, 42°09' 2880 7 87 IN. 20, Lagrange, IN. (L) H - 41°38' 2986 8 87 Interstate 24, Parkdale, IN. L(L) A,H 8.0 41°11' 3376 9 87 Interstate 69, Gas City, IN. L(L) A,H 7.1 40°50' 3278 10 87 No. 45 Rd., Cadillac, MI. L(L) A,H 1.0 44°11' 2060 11 87 MI. 46, Lakeview, MI. L A - 43°25' 2550 12 87 Grand River Ave, Saranac, MI. L(Ad) A,H 4.9 42°52' 2870 13 87 Sprinkle Rd., Portage, MI. L(L) A,H 4.2 43°14' 3083 14 87 MI. 20, Woodville, MI. L(Ad) A,H sym 43°40' 2320 15 87 112th sr., Grant, MI. Ad,L(Ad,L) A,H sym. 43°21' 2550 16 87 24th sr., Harrington, MI. L(Ad) A,H 2.0 43°04' 2690 17 87 MI. 89, Fennville, MI. L(Ad,L) A,H 1.5 42°34' 2800 18 87 East Rd., Three Oaks, MI. Ad(Ad) A,H sym. 41°46' 2940 19 86 Hogan Fanm, Ephraim, WI. R(R) A,H sym, 45°07' 2060 20 85 Kuehn Farm, Carlsville, WI. R(R) A,H sym. 44°56' 2100 21 87 County MM Rd., Green Bay, WI. L(L) A,H sym. 41°28' 2310 22 87 Gass Lake Rd., Manitowoc, WI. L(Ad) A,H sym. 44°02' 2290 23 87 County EB Rd., Sheboygan, WI. L(Ad) A,H sym. 43°43' 2340 24 87 County C. Rd., Port Wash.,WI. L(Ad) A,H sym. 43°22' 2380 25 87 50th. St., N. Cape, WI. L(Ad) A,H 0.5 42°46' 2450 26 86 ILL. 132, Waukegan, ILL. R(R) A,H 3.3 42°20' 2733 27 87 River Park, Kankakee, ILL. (L) H - 41°09' 3211 28 86 Univ.ILL. Campus, Urbana, ILL. R(R) A,H sym 40°05' 3506 29 87 WI. 29, Hatley, WI. L(L) A,H 1.6 44°52' 2230 30 87 WI. 49, Berlin, WI. L(L) A,H 6.3 43°54' 2450 31 87 I 90 and WI. 12, Madison, WI. (L) H - 43°00' 2710 32 87 WI. 81, Beloit, WI. L(L) A,H 2.5 42°30' 3139 33 87 WI. 23, Greenbush, WI. (L) H - 43°46' 2490 34 87 WI. 67, Iron Ridge, WI. (L) H - 43°22' 2600 a Life history stage in which flies were collected. L=larvae, Ad=adult, R-flies sampled as larvae and reared to adulthood in laboratory. Stage designation given in parentheses is for hawthorn flies, without parentheses for apple flies. b Host plants from which flies were collected at a site. A=apple, H=hawthorn. c Distance (km) separating apple and hawthorn trees sampled at paired sites. sympsympatric site where host trees were within 100 m. 115 frozen in liquid nitrogen (these sites are listed as L in Table 33). Only late second and third instar larvae were electrophoretically analyzed from these collections. At other locations adult flies were captured directly from off of their respective host plants using a vacuum aspiration system and were subsequently frozen in liquid nitrogen (these sites are designated Ad in Table 33). For three hawthorn sites (4, 15, 17) and one apple site (15) both larvae and adults were collected from host trees to allow comparisons of the two life history stages which represent sequentially different fly generations (i.e., parents and their immediate offspring). At sympatric site 15, adults and larvae were collected from both apple and hawthorn host plants to determine whether inter-host genetic differentiation was consistent across different life history stages and to qualitatively gauge the extent of inter-host migration. Finally, fruits were collected from the ground beneath host trees at the five sites designated R in Table 33 and the larvae infesting these fruits were reared to adulthood in the laboratory. Laboratory rearing included chilling pupae at 40C in a refrigerator for five months to simulate winter diapause conditions. Standard horizontal starch gel electrophoretic techniques were used and are described fully in Chapter 1 and in Berlocher and Bush (1982). We resolved and scored the six allozyme loci which previously displayed the greatest amounts of inter-host and/or latitudinal variation in the earlier survey of the eastern United States (these six allozymes being: Malic enzyme [Me], Aconitase-Z [Acon-Z], Mannose phosphate isomerase [Mpi], NADH-diaphorase-Z [Did-2] , Aspartate amino-tranjerase-Z [Ant-2] and Hydroxyacid dehydrogenase [Had]). A Mendelian mode of inheritance has been established for all six of these. allozymes (Chapter 1). Isozymes that migrated the nearest to the cathode were designated system 1, the second 116 nearest system 2, etc. Alleles were numbered according to their relative anodal mobilities with the most common allele for each locus designated 100 and used as a standard. Electromorphs resolved for each of the six loci are given in Tables 39-43, which appear after the Discussion section on pages 141-150. Only two alleles were scored for the loci Did-2 and Me. Consequently, only the frequencies for the rarer of the two alleles for these loci appear in Table 40. Three alleles were scored for Had, but one of these alleles (Had9 7) was very rare and so for brevity only frequencies for the second most common allele (HadI 22) are given in Table 40. Electrophoretic alleles migrated identically in adult and larval samples. Genotypic frequencies were examined for deviations from Hardy- Weinberg expectation by G-tests. Alleles were pooled, as required, so that all genotypic classes had expected numbers >1. The Levene conection (Spiess, 197 7) was applied when sample sizes were <100 or when alleles could not be pooled to make expected numbers >1. G-contingency tests were used to test for allele frequency heterogeneity. Alleles were pooled, when necessary, to ensure that each cell in the G-contingency test had an observed number 25. F-statistics were calculated by the method of Weir and Cockerham (1984) with standard deviations estimated by jackknifmg over loci or populations. Corrections for unequal sample sizes in the method of Weir and Cockerham can result in negative Fs'r values. In these instances we report PM as 0. Linear and curvilinear regression analyses were performed between arcsine transformed allele frequencies and either latitude or growing degree days (GDD) base 50°F. GDD is calculated by determining the number of degrees that the average temperature for a day was above 50°F and summing these daily totals throughout the course of the year (negative 117 daily values are considered to be 0). Fifty degrees Fahrenheit is not an arbitrarily chosen temperature for calculating GDD but, rather, represents the approximate lower threshold condition under which post-pupal development occurs for R. pomonella (Reissig et al., 1979). Fahrenheit was used as the unit of temperature in this study because weather stations in the midwestem United States do not provide GDD values in centigrade base. Unfortunately, converting GDD between the two temperature scales is not exact without daily readings from stations, a task which imposed insurmountable logistical and computational hurdles. GDD values from Wisconsin were the yearly averages from 1950 to 1974, in Illinois from 1951-1980, in Michigan from 1931 to 1960, and in Indiana from 1975 to 1987. Regressions were performed separately for apple and hawthorn populations from Michigan/Indiana and Wisconsin/Illinois transects. At sites where both adults and larvae were collected, the allele frequencies used in the regressions were the mean between the two life history stages. Results Consistently significant allele frequency differences were observed for Me, Acon-Z, Mpi, Did-2, Ant-2, and Had between apple and hawthorn fly populations from across the midwestem United States (Tables 34, 39- 43). Of the 28 paired apple and hawthorn sites, only site 4 (Eureka, Michigan) and site 32 (Beloit, Wisconsin) did not show a significant difference for at least one of the six loci analyzed. Me and Acon-Z displayed the greatest amount of inter-host variation being significantly different at 14 and 21 paired sites, respectively. Me and Acon-Z are, in fact, tightly linked on chromosome II along with Mpi (Chapter 1) and significant 118 Table 34. G-contingency tests for allele frequency heterogeneity between paired apple and hawthorn populations. Degrees of freedom.for tests involving each locus are given in parentheses following locus abbreviations. At site 15 both adults (Ad) and larvae (L) were tested for inter-host variation. Site Mall). Amm- min. mm- mam.- mun. Transect 1 1 *** *** *** 2 t t * * 3 ** *** 4 5 * ** 6 t 8 'k 9 ** Transect 2 _ 10 *** *** * *** 12 *** *** 13 * Transect 3 14 *** *** *** * *** 15(Ad) *** *** *** * * *** 15(L) *** *** *** *** *** * 16 *** *** *** 17 *** 18 ** Transect 4 19 *** *** ** 20 *** *** ** *** *** ** 21 * ** 22 * * 23 ** 24 ** * ** 25 *** 26 *** ** 28 ** ** Transect 5 29 ** 3o ** *** 32 * 2.3 0.05 ** E S 0.01 *** E S 0.001 G-contingency test 119 linkage disequilibrium has been found between non-allelic genes for Me and Acon-Z in natural apple and hawthorn populations (Chapters 2, 3). Genetic hitchhiking due to selection at a linked locus could therefore account for the observed correlation in allele frequencies between Me and Acon-Z. The same may also be true for Die-2 and Ant-2, which are separated by a map distance of 3.2 centimorgans on chromosome I (Chapter 1). In this study, 5 of the 7 sites which showed significant frequency differences between apple and hawthorn flies for Aat-Z were also significant for Dia-2 (Fable 34). High levels of linkage disequilibrium have also been observed between Dia- 2 and Act-2 in natural fly populations (Chapters 2, 3). Allele frequencies for Me, Acon-Z, Mpi, Did-2, Aat-Z and Had were similar in intra-host comparisons between adults and larvae collected from hawthoms at sites 4, 15, and 17 and from apples at site 15. Only Me for hawthom flies at site 15 (Grant, Michigan) showed a significant frequency difference between adult and larval life history stages out of a total of 24 tests (Me100 adults = 0593,11 = 345; Me100 larvae = 0.655, n = 467; G- contingency test = 6.61, E _<_ 0.05). Larvae dissected from host fruits represent the offspring of adults collected from off of apple and hawthorn trees. The near constancy of gene frequencies observed between the two generations suggests that intra-host selection is not intense between the two life—history stages. The fact that hawthorn and apple populations were generally in Hardy-Weinberg equilibrium lends further support for this view (Tables 39-43). The 16 significant deviations out of 330 total tests for apple populations and the 24 significant deviations out of 407 tests for hawthorn populations do not differ appreciably from the number of significant tests expected due to random type I error (16.5 and 20.3, respectively, for apple and hawthorn populations). 120 The pattern and magnitude of inter-host differentiation between hawthorn and apple populations was similar for both larval and adult life history stages at site 15 (Tables 34, 3943). Gene frequencies were significantly different between apple and hawthorn populations for both larvae and field captured adults for Me, Acon-Z, Mpi, Die-2, Act-2, and Had (Table 34). As mentioned before, only Me for hawthoms displayed significant intra-host variation at site 15 between adults and larvae. Adults collected directly from apple trees are, therefore, as genetically distinct from hawthorn adults as apple larvae are from hawthorn larvae. This finding indicates that adult flies do not migrate freely between apple and hawthorn trees but instead tend to utilize the same species of host plant which they infested as larvae. Because courtship and mating in R. pomonella occur almost exclusively on or near the fruits of their host plants, differences in host utilization between hawthom and apple flies at site 15 produce pro-mating barriers to gene flow which help maintain host associated polymorphism. Geographic variation was apparent among both apple and hawthorn populations across the rrridwestem United States. Substantial spatial heterogeneity was observed across each of the five north-south transects (Table 35) and the magnitude of geographic variation differed between the two host races. Hawthorn flies displayed greater inter-populational differentiation than apple flies as evidenced by the 5 x higher overall FST value among hawthorn compared to apple populations (0.0626 and 0.0125, respectively; Table 36). In addition, individual loci and alleles showed variable levels of geographic variation. For instance, Me, Acon, and Had had FST values of 0.1403, 0.0984 and 0.806, respectively, among hawthorn populations and 0.218, 0.212 and 0.183 among apple populations. In 121 Table 35. Gwcontingency tests for allele frequency heterogeneity among apple and hawthorn populations along five latitudinal transects in the midwestern United States. mwmmmmmm Apple 1 *** t 2 *** *** 3 ** *** *** *** 4 *t* *** ** *** 5 ** ** *** Hawthorn l *** *** ** *tw 2 *** *** ** *** * *** 3 *** *** * *** * *** 4 *** *** *** *** *** *** 5 ‘ * *** *** *** * 2,5 0.05 ** 2,: 0.01 *** 2,3 0.001 G-contingency test 122 Table 36. PST values (Weir and Cockerham, 1984) across the 28 paired apple and hawthorn populations analyzed in the study. R refers to the PST value calculated by pooling all alleles remaining for a locus besides those listed in the table. Locus Allele Apple Hawthorn Me 100 0.0218 1 0.0092a 0.1403 1 0.0314 Acon-Z 100 0.0214 i 0.0120 0.1033 i 0.0305 95 0.0312 3 0.0175 0.1346 1 0.0377 R 0.0132 1 0.0057 0.0380 i 0.0170 Total 0.0212 1 0.0099 0.0984 i 0.0257 Mpi 100 0.0123 i 0.0060 0.0341 i 0.0170 Dia-2 100 0.0059 1 0.0049 0.0379 1 0.0165 Aat-2 100 0.0023 1 0.0033 0.0025 1 0.0037 75 0.0050 1 0.0053 0.0126 i 0.0064 50 0.0020 1 0.0024 0.0266 1 0.0121 R 0.0031 i 0.0029 0.0061 1 0.0036 Total 0.0032 1 0.0025 0.0108 i 0.0042 Had 100 0.0183 1 0.0063 0.0806 1 0.0229 All loci 0.0125 :1; 0.0058b 0.0626 1 0.0293 Jackknife estimates of standard deviation calculated over populationsa or over locib. 123 comparison, Aat-Z had a FST of 0.0108 for hawthorn flies and 0.0032 for apple flies across the same set of populations. Furthermore, Fs'r among hawthom populations for the alleles Acon-ZI 00 and Acon-295 (0.1033 and 0.1346, respectively; Table 36) were greater than the value for the remaining pooled alleles at this locus (0.0380). A similar pattern existed for allelic variants of Adz-2 among hawthorn populations (Table 36). The observed heteogeneity of PST values suggests that differential selection is occurring among alleles and loci, and that the effects of this selection are more pronounced for hawthorn than apple flies. Patterns of geographic variation were not random across the Midwest. Linear and curvilinear regressions performed between arcsine transformed allele frequencies and either latitude or growing degree days (GDD base 50°F) indicated that frequency clines exist for both apple and hawthorn flies. In only 6 of 52 cases did second order polynomials significantly improve the fits of the regression lines compared to first order linear equations (Tables 37, 38). Consequently, I will confine my discussion to the results of the first order analysis. Apple flies did not display nearly as many significant linear regressions for individual loci with either GDD or latitude as hawthorn flies (8 compared to 22). Also, r2 values (the amount of genetic variation accounted for by the regression) were always lower among apple than hawthorn populations (Tables 37, 38). Apple populations therefore have more unexplained geographic variation than hawthorn populations; a result which suggests that stochastic processes (i.e., genetic drift or founder events) may play a more prominent role in shaping the genetic architecture of local apple than hawthom populations. The absolute values of the slopes of the regression lines were always greater for hawthorn than apple populations (Tables 37, 38). This result is 124 ..¢>oz¢. coaumzvo Hoouo umuwu o» conQEoo mafia cownnoumou mo uHu vo>ouQEH haucmofimacmflm HmHEochaoa “mono Ucooom u .ncowmmoumou HOOH add on» cH ccmwnz How soon» we cmouncw cons mums noHocosvoum oHoHHm nmwnz n .NroH mo nuHc: cH one ncOHnnoumou now How nuouuo cumccmun can modoam m .unourm ¢>oz¢ ~o A Acownmoumou umocwa Hocuo unuHm mo macaw. ucowowwuooo coHnnoumom Hoo.c W_N «Ha Ho.o w.m «« mo.o w M « OHH.O H OOO.O- .OO.O OOH.O H OOO.H «lOm.O nHooH HH< OOm.O H. OHO.O- .OO.O OO0.0 H NOO.~ .4NO.O OOH on: OH~.O H Om0.0- HO.O OOO.O H. Hm~.O HO.O OOH «tuna OO~.O H mOO.O- m~.O mOO.O H. 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OOO.O urrmm.O mO ~ueoo< OOm.O H OOH.H- «.HO.O OOO.H H OOO.~ -.O OOH 6: .:H\.Hz ilfll 3|? gag mama .IlrrllluuquHuaqt uaqHuanqquuuHaaa .GOHnnoumou unocHH on» an cocwmamxo GOHuMHum> owuocoo mo ucaoem I ma .nuooncmuu «Hocwaauxcanoonwz no McMHccH\cmmHnon Honuflo mcon ocoquHsQom mamas How Anna. meow when when menace mcHzouo no ocsuHumH Hocuwo can moHocosvouu oHoHHm coauouncmuu cHnoum cooauon nonaamcm cowmnouoou unocHH uocuo unuHm .nm magma 125 .A¢>ozonQEH aHucmOHuHcon HmHEocaHoa nocno vcooom u .mGOHmmonmon HOOH HHd 0:» GH OOHHQE now onocu mo Umouncw no»: one: moHocoonnu oHoHHm nmwnr n .NIOH mo nuHc: cw one nGOHnnonuon now now nnonno Unmocmum can moQOHm m .umourm ¢>oz< .o A Aconmonmon nmocHH noono unnHu mo 332 23.8388 5338? HO0.0 w u 2:. H0.0 .v. a I. m0.0 w m ... OhH.O H OOM.HI «HHO0.0 Hum.O H. ovO.v HHHH0.0 QHOOH HHQ OvN.O H OOO.HI HHHH0.0 mvh.o H. th.m HHHOO.O OOH Com OON.O H ObO.OI H0.0 hO0.0 H. MON.O H0.0 OOH Nlumd me.O .H hOO.OI HON.O OO0.0 _H omm.MI HHO¢.O OOH NIMHQ MON.O H. OOM.H HHHOO.O OHm.O H mv¢.m «Hom.O OOH HQ: mmm.o .H OOO.NI «Humm.O mON.H H OOh.m HHHOm.O mm NIGOOG OHm.O _H OOO.HI UHHOm.O mmm.H H. HOO.m usaHm.O OOH 02 .HHH\.H3 vhH.O H OON.NI HHHH0.0 mH0.0 H mcm.m «HHM0.0 QHOOH HHG NMN.O H oom.Nl HHHO0.0 HOO.H H Omm.h HHHF0.0 OOH Cm: NNH.O H www.cl «Hamm.o OO0.0 H OOO.H «Hum.O OOH Ntumd bMN.O H OOM.HI HHHOO.O be.O H MON.v HHHHO.O OOH NIMHQ HhN.O H OOO.H HHHOF.O Hb0.0 H mmv.mr UHHHN0.0 OOH HQ: Ohm.O H. OOO.MI HHHOO.O ¢m¢.H H NvO.HH HHHNO.O mm Nicoom mOm.O H. OOO.MI UHHMO.O th.H H Omm.OH uHHHNb.O OOH 02 .GH\.H2 lHHflJflHWJmlluflddfll _IIIMHIII duuflduuulmlluddAWl. IIIMHIII ududfld ddddfl.uuudddHH .mmdu udddfludqlllllllll a? .GOHmnonoon noocHH can an vOGHMmem coquHnm> owuocom mo unseen I Nn .nuooncmnu nHocHHHH\canoouH3 no mcMHucH\cmmHnowz nonuHo mGOHm ncOHHMHsmoQ :nocusmc now Hana. boom anon name menace ocwzono no oosuHuMH nonuwo can anocosvonm oHoHHm emanouncmnu cHnonm cowsumn nomaHmcm GOHnmonmon nmoCHH nmcno unnwm .mm mHQma 126 consistent with the higher levels of genetic variation found among hawthorn populations and also helps to account for the observed pattern of inter-host differentiation. Figure 6 graphically depicts the relationship between GDD and the average arcsine transformed allele frequency for Me] 00, Acon- 295, Mpi37, Did-2100, Aat-2100 and Had100 for sites along Michigan/Indiana and Wisconsin/Illinois transects (Note: Plotting allele frequencies versus latitude gave roughly the same result as graphing allele frequencies against GDD). Inter-host differentiation was greatest at the colder, northem sites and was primarily due to the contributions of Me, Acorn-2 and Mpi (Tables 34, 39-41). At centrally located sites with more moderate temperatures, hawthorn and apple populations were less genetically distinct, until at site 4 near Eureka, Michigan, and site 34 in Beloit, Wisconsin, none of the six loci analyzed in the study showed a significant inter-host frequency difference (Table 34). Hotter sites further to the south once again began to show increased inter-host heterogeneity. However, unlike the northern sites, Had displayed the greatest amount of inter-host differentiation in Illinois and Indiana (Tables 34, 40). Genetic differentiation between apple and hawthorn flies is, therefore, a function of local thermal conditions (or latitude, as the two factors are correlated), with inter-host divergence resulting from differences in the slopes of allele frequency clines between the two races. Me, Acon-Z, Mpi, Aat-Z, Die-2 and Had showed both similarities and differences in their clinal patterns of variation across the Midwest. Because allele frequency clines were more clearly defined for the hawthorn race, my discussion will initially focus on hawthorn populations along transect l (Michigan/Indiana) and transect 4 (W isconsin/ Indiana), the two most intensively surveyed transects in the study (Note: Site 10 was considered to Figure 6. 127 Average arcsin transformed allele frequency for M3100, Acorn-295, Mpi-3 7, Act-2100, Did-2100 and Had] 00 for apple and hawthorn populations along Michigan/Indiana and Wisconsin/Illinois transects plotted against growing degree days base 50°F. The first order linear regression equations are given for apple and hawthorn flies along with r2 values (the amount of genetic variation explained by the regression equation) and the probability level (12) for the AN OVA F-test of the null hypothesis that the slope of the regression line = 0. 128 Growing Degree Days versus Average Allele Frequency Michigan I Indiana transects 60‘ OHewthompopulatlom OApple populations 3" . t 55- + Hawthorn y-102.m.0.0220x 12.0.1113 a; 0.0001 5 1 + Apple y- 52033-00050: 3.0.404 a; 0.0016 O 50. g . g 45. .- 1 .g 40. a. 1 “T a V I V I V I V r V I V t r I v, ‘1 2000 2200 2400 2600 2000 3000 3200 3400 3000 GrowingDeg'eeDaysmueso‘h Wisconsin I Illinois transects 55‘ O Hawthorn populations OApple populations 3" . + i;- so. Hawthorn y-7s.331-0.01301r 12.-0.302 3; 0.0001 2 . ‘ Apple y-50.694-0.0040x 3.0.443 as 0.0102 2 O 1 . + g 4m . ,_ 1 (one 2 + .J\ n E 35.1 9 .- 304 2 . as v v V U V r V v V I V f ' V ' ' 2000 2200 2400 2000 2000 3000 3200 3400 3000 Grewlngchecanswmso‘h Figure 6. 129 be the northern most site along transect 1 in this discussion). For transect 4, allele frequencies for Me100, Acon-295 and Mpi37 displayed sharp drops between hawthorn populations 20 and 21 north of Green Bay in eastern Wisconsin, leveled off and even showed somewhat of an increase between populations 21 through 25, and then fell for a second time south of site 25 near the boarder between Wisconsin and Illinois (Figure 7, Tables 39-41). The linked loci Me, Acon-Z and Mpi therefore behaved in a similar fashion among transect 4 hawthorn populations. In contrast, Had] 00 frequencies did not change appreciably between hawthorn sites 20 and 21 but did fall along with Me] 00, Acon-295 and Mpi-3 7 south of population 25 (Figure 8, Table 40). Did-2100 frequencies decreased steadily from hawthorn populations 20 to 24 (Figure 8, Table 40). However, sites 25 and 26 formed a plateau of elevated Bic-2100 frequencies that was more pronounced and occurred slightly further south, than similar peaks for Me100, Acon-295, Mpi37 and Had! 00. Allele frequencies for Did-2100, like those for Mel 00, Acon-295 , Mpi3 7, and Had100, also declined sharply toward the southern end of transect 4. Aat-2100 displayed a marked drop in allele frequency at hawthom site 24 which was also seen for Did-2100 and to a lesser extent for Had] 00, but was not observed for Acon-295, Me] 00 or Mpi3 7 (Figures 7, 8). In general, Aat-ZIOO showed a very similar pattern of geographic variation along transect 4 as Did-2100 (Figure 8, Tables 40, 42) as would be expected due to the close proximity of Act-2 and Did-2 on linkage group I (Chapter 1). Comparisons of allele frequency clines for hawthorn flies between transects 1 and 4 revealed both similarities and differences. As was the case for transect 4, Me] 00, Acon-Z 95 and Mpi3 7 all displayed large frequency decreases at the northern end of transect 1 between sites 10 and 4 (Figure 7, Figure 7. 130 Allele frequencies for M e1 00, Acon-295 and M1913 7 for apple and hawthorn populations along transect l (Michigan/Indiana) and transect 4 (W isconsin/Illinois). Sites are arranged by decreasing latitude from left to right along the x-axis. Site 10 is included as the northern most site for transect 1. 131 Allele Frequencies tor Memo, [icon-295 and Mpi37 Along Transect 1 (ML/Ind.) and Transect 4 (Wl.llll.) Allele ireq. Me 100 O O MelTreneectt OW +4001- 0-2 I I T I I Y 10 1 4 s 6 7 e 9 1reneecttenee 0.81- , Aeonl'l’reneectt c «that 8 . < 304-: 4 000 I I I I I I 10 1 4 5 O 7 9 Tmnecttellee 0.3- MplITreneecti l h Gm 202-1 '0'” a 2 6r 2 3 .2 2 Allele ireq. A0011 1: Allele tree. Me 100 411.1. mg. Mpi 17 0.71 1 MeITreneecu ”-1 . 0- w 051 ...” 4 0.44 ”-1 0.2- 0" f I r I I I I Ifi 19 20 21 22 23 24 25 28 27 20 Trencect4eltee “q AconITreneect4 05‘ 0W *w 0.4- ”-1 4 “a 0.1-1 on i I I I I I T j 1 19 20 2122 23 24 25 26 27 2 Tmeecueltee 0.21 Mpi/Tmeecu ‘ O- W '0' ~01- I 19 20 21 22 23 24 25 26 27 20 Tnneect4eltee Figure 8. 132 Allele frequencies for Aat-2100, Did-2100 and Had100 for apple and hawthorn populations along transect 1 (Michigan/ Indiana) and transect 4 (Wisconsin/Illinois). Sites are arranged by decreasing latitude from left to right along the x- axis. SitelO is included as the northern most site for transect 1. 133 Allele Frequencies tor Ant-210°, Die-210° and Hadloo Along Transect 1 (ML/Ind.) and Transect 4 (Wi./lll.) 0.0-1 0.0- AetITreneect‘l ”-1 o W 05-1 § ' *- Aeoh § ‘-’ a ‘ ‘ 0.4 0.4-1 ' a g 1 g I i i ‘ 063‘ ‘ 0.3-1 0'2 I I I I I I I I I 0‘2 III I I I I I I I 10 1 2 3 4 5 3 7 3 9 12 20 21 22 23 24 25 23 27 23 Treneecneltee Tm4elee 0.33 10. l DielTreneectl OieITreneect4 3 01-1 ° W 3 o- W e- 7.’ W0 " 'a' a. i .9 a "<' < 0.5 I I I f I I I I I 0" I I I I I I 1 I I 10 1 2 3 4 5 3 7 3 9 12 20 21 22 23 24 25 23 27 2 Treneectieltee Treneeet4eitee 1.0! ‘OH 0,... °"‘ 0- W 8 o- w 3 «e- Apple v. 1 + A”. " 0.3 g 01- E 1 0.7" g or: g .2 0.6-1 3 ‘ a . 3 one ‘ 031 1 - 1 05 v e T e I I 1 Vfi 0" V ' ' V ' I ' V ‘ 10 1 2 3 4 s g 7 g g 13 20 21 22 23 24 23 26 27 2O Truncation“ Treneect4el|ee 134 Tables 3941). However, allele frequencies for M e1 00 and Acon -295 fluctuated more sharply among centrally located populations in Michigan than in Wisconsin (a possible cause for the frequency peaks observed for hawthorn flies at site 5 will be discussed later). Had100 frequencies changed roughly equivalently between the two transects (Figure 8, Table 40) but via-2100 and Ant-2100 clines were different, as both Did-2100 and Aat-2100 displayed much more even and gradual reductions in allele frequencies along transect 1 than transect 4 (Figure 8, Tables 40, 42). Allele frequency clines for apple infesting populations, while not as distinct or as statistically significant as those for hawthorn flies, were also apparent. For instance, Me] 00 and Acorn-295 frequencies both dropped between apple populations 20-21 and 1-4 just as they did for the corresponding paired hawthorn populations (Figure 7, Tables 39, 40). In addition, Mpi3 7 allele frequencies fell between apple sites 20 and 21 and sites 10 and 1 (Figure 7, Table 41). Act-2100, Die-2100 and Had100 allele frequencies also displayed a general decline in allele frequencies between apple sites 10 and 2 along transect 1 just as they did for hawthorn flies (Figure 8, Tables 42, 43). However, none of these three loci showed an obvious decrease in frequency among apple populations at the northem end of transect 4. Had! 00 did vary significantly with both latitude and GDD for apple sites in Wisconsin and Illinois (Table 37). However, Hadloo frequencies changed more gradually and uniformly among apple populations along transect 4 than for hawthorn populations (Figure 8, Table 40). Allele frequencies for Acon-Z suggest that at least some gene flow may be occurring between local apple and hawthorn populations. Frequencies for Acon-Z 75 were higher for both hawthorn and apple 135 populations in central and western Michigan than they were in any other region of the Midwest (Figure 5, Table 39). The same phenomena also occurred for Acon-289 at sites 30 and 32 in Wisconsin and Illinois (Figure 5, Table 39). In addition, the rare allele Acon-273 was present only in apple and hawthorn populations along transect 4 (Table 39). Selection could be responsible for the elevated frequencies of certain Acon-Z alleles only at specific paired apple and hawthorn sites. However, Acon-Z allele frequencies were usually significantly different between the two host races at paired sites (Table 34); a result suggesting that selection pressures differ between sympatric populations of hawthorn and apple flies. It is also unlikely that stochastic processes alone could account for the independent increases of rare Acon-Z alleles in apple and hawthorn populations at only certain paired sites. Inter-host gene flow must therefore be at least partly responsible for the increased frequencies of Acon-Z 75 and Acon-289 in both host races in central Michigan and Wisconsin, respectively, and for the occurrence of the rare allele Acon-Z 73 only along transect 4. Gene flow may also account for the observation in Chapter 3 that polymorphic allozymes which do not display host associated differentiation at sympatric sites also show low levels of intra-host geographic variation across eastern North America. Although latitude and temperature are inter-related environmental factors, their relationship is not perfect. Several irregularities exist in the pattern of isothermal clines through Michigan and Wisconsin (Figure 5) which are informative for determining whether latitude or GDD is the most accurate predictor of gene frequencies for R. pomonella populations. For Michigan/Indiana transects GDD proved to be the more reliable determinant and explained approximately 10% more of the genetic 136 variation among both apple and hawthorn populations than latitude (see r2 values for all loci in Tables 37, 38). GDD and latitude accounted equally well for genetic variation among hawthorn populations in Wisconsin and Illinois (Table 38) but latitude was a better predictor among apple populations (r2 latitude = 0.59, r2 GDD = 0.44; Table 37 ). Unfortunately, four hawthorn sites in Wisconsin and Illinois (27, 31, 33, 34) did not have paired apple collections. Three of these four unpaired sites (31, 33, 34) were located within thermal warm areas in Wisconsin (Figure 5). The addition of apple populations from these three sites would more than likely make the r2 values for latitude and GDD among Wisconsin/Illinois apple populations very similar to one another. If one also considers that GDD estimates for sites are less accurate than latitude (GDD values being baSed on multiple year averages obtained from the closest weather station to a collecting site in years when temperature data were available), then ambient temperature would appear to be a slightly better indicator of the genetic composition of local R. pomonella populations, at the very least in Michigan and Indiana, than latitude. Hawthom populations displayed several allele frequency shifts for Me100 and Acon-295 that were, in fact, correlated with irregularities in local thermal conditions. First, site 5 (Okemos, Michigan) is located within a pocket of colder GDD in central Michigan (Figure 5). Gene frequencies for Memo and Acon-295 were significantly higher in hawthorn than in apple populations at this site (Me1 00 hawthorn = 0.455 and Me] 00 apple = 0.298; Acon-295 hawthom= 0.295 and Acon-295 apple = 0.098; Tables 34, 39, 40, Figure 7). Site 4 (Eureka, Michigan) is located approximately 20 km north of site 5 but is warmer. Me] 00 and Acon-295 did not show inter- host differentiation at site 4 (Table 34) and were present at respective 137 frequencies of 0.283 and 0.214 in hawthorn larvae and 0.333 and 0.200 in hawthorn adults. Warmer temperature sites south of Okemos, Michigan (sites 6-9; see Figure 5) showed the same trends for Me and Acon-Z allele frequencies that were observed at site 4 (Figure 7, Tables 39, 40). A "blip" therefore occurred for Me100 and Acon-295 frequencies that corresponded with a cold bubble of GDD in central Michigan. A second example involves fingers of higher GDD which extend up into Michigan around the Kalamazoo area (see site 13 in Figure 5) and in Wisconsin northeast of the city of Madison (see site 31). Gene frequencies for Me1 00 and Acon-295 were almost always lower for hawthorn populations within these warm areas (site 13, Portage, Michigan, and sites 33 and 34 near Greenbush and Iron Ridge, Wisconsin) compared to sites of equivalent latitude in parallel transects (sites 6, l7 and 18 in the case of site 13, sites 23 and 30 for site 33, and site 24 for site 34; see Tables 39 and 40 for Acon-Z and Me allele frequencies, respectively). The only exception to this general trend was for Acon-295 in comparisons between sites 23 and 33, for which the fiequency of the allele was lower at the colder site 23 (0.221) than at the warmer site 33 (0.306). Finally, in a related study of hawthorn populations along a transect running from north of Milwaukee, Wisconsin to south of Chicago, Illinois (Feder et al., manuscript in prep.), gene frequencies for Me] 00 and Acon- 295 dropped dramatically around Milwaukee corresponding to an increase in GDD presumably due to a heating effect of the city. 138 Discussion The results from this study strongly suggest that partially reproductively isolated host races can evolve in sympatry. However, to prove that the apple race originated via a sympatric host shift I must still show that 1.) the apple infesting form of R. pomonella was not reproductively isolated from hawthorn flies prior to its colonization of apples and 2.) that the apple race could not have evolved in allopatry from the hawthorn race and then been secondarily introduced into the northeastern United States. All available evidence indicates that the apple race is directly descendant from a hawthom infesting form of R. pomonella and was not derived from an unrecognized sibling species. For instance, experimental crosses give no indication of any postrnating or etlrological premating reproductive isolation between hawthorn and apple flies (Reissig and Smith, 1978; Smith, 1988; R. Prokopy, pers. comm.). Also, no single morphological or genetic character exists which diagnostically distinguishes apple from hawthorn flies, as the host races are currently known to differ only in allele frequencies for six specific allozyme loci. In fact, because allele frequency clines are steeper among hawthom than apple populations, hawthorn populations at southern sites in the Midwest are actually more genetically similar to northern apple populations than they are to northern hawthorn populations. Consequently, different apple populations from across the Midwest do not cluster together genetically as a discrete subdivision from hawthorn populations as might be expected if the apple race was formed from a sister taxon to the hawthorn race. Furthermore, the non-random pattern of Acon-Z 73, Acon-Z 75 and 139 Acon-289 allele frequencies in Michigan and Wisconsin (Figure 1) and the similar pattern of linkage disequilibrium in apple and hawthorn populations (Chapters 2, 3) suggest that at least some gene flow is occurring between local apple and hawthorn populations. It is therefore very unlikely that apple and hawthorn populations of R. pomonella are completely reproductively isolated. It is still possible, of course, that different races of R. pomonella exist on different species of hawthoms and that the apple race was derived from just one of these "hawthorn races". As many as 1,000 species of Crataegus comprising 19 different species groups may, in fact, be endemic to North America (Femald, 1950; Correll and Johnston, 1970). However, the taxonomic status of a majority of these Crataegus species is questionable as hybridization, polyploidy and apomixis is common in the genus (Phipps, pers. comm). Many of the trees that we identified as C. mollis in this study may, therefore, have been of hybrid origin. Nevertheless, R. pomonella attacks only a restricted set of Crataegus "species", with infestations confirmed for only 14 endemic hawthoms (Bush, 1966; Wasbauer, 1972; Berlocher, 1976; McPheron et al., 1988). In the northeastern United States, only C. mollis or hawthorn species which are phenotypically similar to C. mollis in the Brainerdianae, Coccinnea , Macracantha, Pruinosa, Punctata and Tenuifoliae series have been reported to be parasitized by the fly (O'Kane, 1914; Wasbauer, 1952; Bush, 1966). It therefore appears that R. pomonella utilizes only a small number of potential hawthorn hosts in the Northeast, attacking only those species that share a similar fruiting phenology and fruit characteristics; A trend not conducive to the formation of different hawthorn races. In addition, electrophoretic analysis of R. pomonella populations infesting C. punctata, C. brachyacantha, C. douglasii 140 and C. monogyna from the southern and western United States has given no evidence for genetically differentiated hawthorn races (Berlocher, 1976; McPheron, 1987). Although we cannot completely discount the possibility of host specific hawthorn races, all available data suggest that hawthorn populations of R. pomonella represent a single race which displays latitudinal variation. Several points also make it unlikely that the apple race formed in allopatly from the hawthorn race and was subsequently introduced into the Hudson Valley region of New York. First, genetic bottlenecks due to reductions in population size frequently occur when a species colonizes a new area. Reduced amounts of genetic variation have, in fact, been observed for newly introduced populations of R. pomonella and R. completa in the western United States (McPheron et al., 1988c; Berlocher, 1984b). However, apple populations in the eastem United States have as much or more allelic diversity as eastern hawthorn populations (Chapter 3). There is, therefore, no genetic evidence indicating that the apple race was introduced into the New England area. Second, the R. pomonella species group is endemic to North America (Bush, 1966), thereby ruling out the possibility that the apple race originated in Europe and was brought to the United States along with cultivated apples. Therefore, if the apple race formed in allopatry, it must have originated somewhere in North America. The range of domestic apples is, however, contained entirely within that of hawthoms in North America. Consequently, even if R. pomonella did not originally shift onto apples in the Hudson Valley, the apple race could not have been geographically isolated from hawthorn infesting populations at the time of its inception. 141 Third, B.D. Walsh (1867) noted at the time of the initial discovery of the apple race that although R. pomonella "exists both in the East and in the West, it attacks the cultivated apple only in a certain limited region, even in the East, for this new and formidable enemy of the apple is found in the Hudson-river valley, but has not yet reached New Jersey". Therefore, up until 1867, no apple infesting population of R. pomonella had been reported outside of the New England area. We now know, however, that an isolated population of R. pomonella does infest both hawthoms and domestic apples in the highlands of Mexico (Bush, 1966). But Mexican flies are unique in that they possess a hyaline spot at the base of the apical band on their wings which makes them morphologically distinguishable from all other taxa in the R. pomonella group (Bush, 1966). The apple race in the United States could not, therefore, have been derived from the Mexican population. Although the Mexican population does not clarify the issue of the geographic origin of the apple race, it does lend further indirect support for hawthoms as the original host for the apple race. In Mexico, R. pomonella has independently shifted from hawthoms to domestic apples within historical times (apples were introduced into Mexico from Spain in 1522; Standley, 1922). However, Mexico does not have any endemic species of crab apple (Standley, 1922; J. Beaman, pers. comm.). Therefore, in Mexico at least, R. pomonella shifted directly from hawthoms to domestic apples. Two factors are primarily responsible‘for the genetic differences observed between hawthorn and apple populations of R. pomonella. First, adult flies do not migrate randomly between hawthorn and apple trees. This was seen from the fact that adult flies collected off of hawthorn and apple trees at site 15 showed the same pattern and magnitude of genetic 142 divergence as their larval offspring. Host fidelity therefore exists for these flies with adults tending to utilize the same species of host plant which they infested as larvae. Second, differential selection occurs for flies infesting apples and hawthoms and appears to be related in some way with ambient temperature. The latitudinal allele frequency clines among both apple and hawthorn populations suggest that selection pressures are not constant across the ranges of both host races, however. Allele frequency Clines are also steeper for hawthorn flies than for apple flies and intersect between the two host races in the central portion of R. pomonella's range (Figures 6-8). This accounts for the greater amount of geographic differentiation in the hawthorn race as well as for why northern and southern sites show higher levels of inter-host divergence than centrally located areas in the Midwest. Further research is needed in three areas to clarify specific details of the host specialization process. These include: 1.) establishing the extent of and mechanisms responsible for host fidelity and host related selection; 2.) determining how temperature acts as a differential selective factor and 3.) estimating effective levels of gene flow among and between apple and hawthom populations. Mark-recapture and controlled rearing experiments would help address questions concerning host fidelity and gene flow. Collecting larvae from infested fruit and marking and releasing the resulting "naive" adults the following summer would provide estimates of intra- and inter-host migration. Hardwired behavioral differences in host recognition and conditioning in adults are two likely mechanisms responsible for host fidelity (larval conditioning has never been found for Rhagoletis flies but adult conditioning has; Prokopy et al., 1982). Releasing naive apple flies 143 under hawthorn trees and vice-versa would establish the relative importance of genetically based differences in host preference. Adult flies could also be exposed to alternative host fnrits in the laboratory prior to their release. Analyses of the subsequent host acceptance behavior of these "trained" flies under field conditions would indicate the extent to which adult conditioning affects host choice. Furthermore, by combining the results of mark-recapture studies with those from reciprocal egg transplant experiments measuring survivorship levels of progeny derived from hawthorn x hawthorn, hawthorn x apple and apple x apple crosses, I will be able to directly estimate effective gene flow between the host races. Ambient temperature has always been regarded as an important environmental factor influencing host plant-parasite interactions for Rhagoletis. Rhagoletis pomonella is, in general, univoltine across its range and adult life expectancy has been estimated at from 3 to 6 weeks in the field (see review by Boller and Prokopy, 1976). Adults must therefore eclose at times paralleling the fruiting phenologies of their host plants. "Temporal windows" for infesting apples and hawthoms are different with the fruit of domestic apple varieties favored by R. pomonella generally ripening and falling one month earlier than fruit of native hawthorn species. In addition, flies must also develop as larvae and pupae at rates closely matching local environmental conditions. If development proceeds too quickly flies may not diapause and emerge as a second generation in the fall when suitable host fruit is no longer available. Alternatively, if development occurs too slowly flies are exposed to potential predators and parasites for a longer period of time and also run the risk of freezing to death during the first frost. Ambient temperature does, of course, correlate with latitude and is also a major determinant of the phenology of fruit maturation. 144 Temperature may therefore have a profound effect on development rates for hawthorn and apple flies across their respective ranges. Consequently, latitudinal variation in temperature could account for the allele frequency clines in the two races. Furthermore, differences in the fruiting phenologies of apple and hawthorn trees could explain why allele frequency clines differ between the two host races. The temperature hypothesis is contingent, of course, on Me, Acon-Z, Mpi, Did-2 and Had being related in some way with developmental timing in R. pomonella. Elucidating the genetic basis for diapause related traits in insects has proven to be a difficult task, however. Although diapause characters do show latitudinal variation associated with temperature and photoperiod (see review by Tauber and Tauber, 1976), few examples exist documenting the genetic basis for this phenotypic variation. One possible exception may be the pitcher plant mosquito, Wyeomyia smithii, in which a weak association has been found between Phosphoglucomutase and Phenyl- alanyl- leucine amino-peptidase (two loci showing latitudinal frequency clines within the species) and phenotypic variation for diapause and developmental timing (Istock and Weisberg, 1987). Genetic and/or phenotypic markers associated with diapause characters have also been found for the green lacewings, Chrysopa carnea and C. downesi (Tauber et al., 1977); the European corn borer, Ostrinea nubilalr's (Shower, 1981); and the eastern tiger swallowtail butterfly, Papilio glaucus (Rockey et al., 1987). R. pomonella appears to represent another example as preliminary studies indicate that allele frequencies for Me, Acon-Z and Had correlate with the timing of diapause termination and adult eclosion for hawthom flies (Feder et al., manuscript in preparation) 145 A potentially interesting test of the temperature/development hypothesis for R. pomonella would be to sample hawthorn and apple fly populations along altitudinal transects in the Appalachian mountains. The prediction would be that if temperature is important and migration rates are low or moderate, allele frequency clines similar to those observed in the Midwest should also be found for the two host races along the slopes of these mountains. Larval transplant experiments performed under controlled rearing conditions would also provide valuable information on how temperature influences host plant interactions for R. pomonella. It is not uncommon for allozyme surveys to uncover one or more loci whose alleles display a clinal pattern of variation correlated with some aspect of the physical environment (Johnson, 1971; Clegg and Allard," 1972; Harnrick and Allard, 1972; Christiansen and Frydenberg, 1974; Koehn et al., 1976; see review by Hedrick et al., 1976). Latitudinal, seasonal and altitudinal variation in temperature have been implicated as causal factors for a number of allozyme clines including those for the freshwater fish, Catostomus C larkii (Koehn, 1969); the marine fish, F undulus heteroclitus (Mitton and Koehn, 1975); the fathead minnow, Pimephales promelas (Merritt, 1972); the fruit fly, Drosophila melanogaster (Berger, 1971; Johnson and Schaffer, 1973; Miller, Pearcey and Berger, 1975); and the butterfly, Colias meadii (Johnson, 1976). What is unusual about R. pomonella is that ambient temperature apparently has different consequences for conspecific populations infesting different host plants. Host plant associations therefore add an additional level of environmental heterogeneity for R. pomonella which helps maintain increased amounts of intraspecific genetic variation; a result consistent with predictions of niche 146 theory (Levene, 1953; Maynard-Smith, 1966, 1970; Levins, 1968, Christiansen and Feldman, 1975; Felsenstein, 1976). Allele frequency Clines for hawthorn and apple flies are not completely discordant, however, and regions where the two races show similar patterns of genetic variation have important evolutionary implications. The three areas where the largest allele frequency changes occur for apple and/or hawthom populations are located in or near major ecological transition zones in the Midwest. Sites 14 in Michigan and 20-21 in Wisconsin are situated at the boundary between deciduous eastem forest and arboreal lake forest habitats. Likewise, sites 25-26 near the Illinois/Wisconsin border lie where the central prairie meets deciduous eastern forest. The ecological consequences of these zones are significant and mark cutoff points in the distribution of numerous plant species. Changes in voltinism and/or host plant associations occur across these regions for several different phytophagous insects including the European com-borer, (Showers, 1981) and the swallowtail butterfly, Papilio glaucus (for review see Scriber and Hainze, 1987). The finding of a similar pattern for R. pomonella supports the hypothesis that these zones have a general impact on the evolution of life history traits for phytophagous insects. The observed frequency clines in R. pomonella could, of course, be due to secondary contact rather than selection. However, there is no historical or biogeographic evidence indicating that geographically isolated northern and southern populations of R. pomonella ever existed. It is therefore much more likely that R. pomonella recolonized northern latitudes along with hawthoms following the retreat of ice sheets in North America some 10,000 to 20,000 years ago than for populations of the fly to have expanded from pleistocene refugia. Also, although apple and 147 hawthorn flies both display allele frequency clines, the configurations of these clines do show some differences between the two host races and among different loci within the races. Furthermore, Memo and Acon-295 frequencies for hawthorn populations co-vary with irregularities in local thermal conditions. These latter two observations are not consistent with the secondary contact hypothesis and argue for differential selection as the causal basis for allele frequency clines in R. pomonella. Another important question is whether apple and hawthorn host races are incipient species. A host race is a parasitic population which, by adapting to a preferred host, has become partially reproductively isolated from other conspecific populations specialized on alternative hosts (Diehl and Bush, 1984). Host races may therefore be at various stages of divergence ranging from populations which almost freely interbreed to those that rarely exchange genes. Based on available data, it is difficult to judge whether apple and hawthom flies have reached or will ever reach the evolutionary point of no return when they should be considered distinct species. In essence, the results of this and the preceding chapters have shown that host specific traits can evolve within geographically continuous populations. The key question then is whether these host associated adaptations are sufficient, in and of themselves, to eventually cause the complete reproductive isolation of populations. Indirect support that they are has come from additional population genetic studies involving sibling species in the R. pomonella complex. For instance, R. mendax is a closely related sibling species to R. pomonella which infests blueberries (Vaccinium sp.) and huckleberries (Gaylussacia sp.) in the eastern United States and Canada (Bush, 1966). Although field captured R. pomonella and R. mendax adults will hybridize in the laboratory and produce fertile and 148 viable F1 progeny (J. Frey pers. comm.; Feder and Bush, submitted), sympatric populations of the sibling species are genetically distinct in nature and to not interbreed (Berlocher and Bush, 1982; Feder et al., submitted). Genetic analysis of reproductively mature adults collected from interdigitated blueberry bushes and apple trees indicate that R. mendax and R. pomonella maintain 100% complete host fidelity in the field (Feder and Bush, submitted). Differential host plant recognition is therefore a very effective pre-mating isolating barrier between at least two sympatrically distributed sibling species in the R. pomonella group. The allele frequency clines indicate that both hawthorn and apple races are not evolving uniformly across the Midwest, however. Primary frequency clines have been implicated in speciation (Fisher, 1930; Murray, 1972; Endler, 1977) and it is possible that R. pomonella populations are "isolated by distance" as a consequence of being differentially adapted to- local thermal conditions. Both hawthorn and apple races did display sharp allele frequency "steps" across environmental transition zones in the Midwest (Figures 7, 8). In addition, hawthorn populations at the northern and southern ends of R. pomonella’s range are essentially fixed for altemative alleles at the loci Had, Did-2 and Me (McPheron, 1987). R. pomonella populations at different latitudes may therefore be "genetically incompatible" with one another even though they are inter-connected by a series of populations exchanging genes. It will be interesting to see whether allele frequency clines for R. pomonella can become steep enough to result in "hybrid zones" given the fly's apparent ability to disperse over relatively long distances. Whether or not R. pomonella host races are "cohesive evolutionary units" is not central to the issue of sympatric speciation, however. The 149 important question is whether host recognition behaviors are constant across the range of a race. For example, if flies infesting hawthoms continue to prefer hawthoms when experimentally transplanted into different portions of their distribution, then host shifts ensure the divergence of populations regardless of whether selection pressures vary from locality to locality within races. The results from site 15 confirm that some host fidelity exists for R. pomonella in at least one portion of the fly's range. However, apple and hawthorn populations at sites 4 and 32 showed no significant genetic differentiation (Table 34). Is the lack of genetic divergence between apple and hawthorn populations at these two sites due to high levels of inter-host gene flow? Or, alternatively, is host fidelity still strong at sites 4 and 32 but selection pressures on Acon-Z, Mpi, Dia-2, Act- 2 and Had the same for apple and hawthom flies? The shapes of the allele frequency clines among hawthorn and apple populations suggest that the latter possibility is true. However, detailed studies measuring inter-host gene flow across the range of R. pomonella are needed to resolve this point and establish the extent to which apple and hawthorn races are discrete populations on separate evolutionary pathways. In conclusion, R. pomonella is rapidly becoming a model organism for the study of speciation. Genetic differences exist between recently formed host races of the species and the geographic pattern of allozyme variation suggests that differences in host plant utilization and host associated development (in some way related to ambient temperature) are responsible for reducing gene flow between apple and hawthorn races. My next task is to characterize exactly how these factors operate at the population level and to translate their mode of action to the speciation process. In this regard, the ability to hybridize several different R. 150 pomonella species in the laboratory will help us elucidate the genetic basis for host associated traits, such as differential host recognition, which appear to play a major role in reproductively isolating taxa in the R. pomonella group. 151 .eOHunHHHavo OnoncheroHoz eonu coHocH>0o ocnoHuHcoHn now encore HOO.O w m use HO.O w u a. 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Chapter 5 Local and Microgeographic Genetic Variation between Host Races of Rhagoletis pomonella Introduction The niche-variation hypothesis (Levene, 1953; Van Valen, 1965; Levins, 1968) predicts that genetic polymorphism is correlated with the ability of a population to utilize different environmental resources. If true, then differential selection in heterogeneous environments should be an important factor maintaining genetic variation (Levene, 1953; Levins, 1968; Maynard-Smith, 1970) and promoting speciation (Maynard-Smith, 1966) in natural populations. Niche theory has found wide application in the study of phytophagous insects due in part to the existence of numerous pest "biotypes" which attack economically important plant cultivars (see review by Diehl and Bush, 1984). Differential habitat use is also central to a long- standing debate concerning modes of speciation. Speciation in animals is generally thought to require the geographic isolation of populations to eliminate the homogenizing effects of gene flow (Mayr,l963). However, Bush (1966, 1969a,b, 1975) has proposed that speciation in certain phytophagous and parasitic insects occurs sympatrically and is initiated 161 162 when insects shift and become affiliated with new hosts. Although a number of examples demonsu'ate associations between particular phenotypic or genotypic attributes of a population and some aspect of the environment (see reviews by Hedrick et al., 1976 and McDonald, 1983), documenting the existence of host associated polymorphism in sexually reproducing insects has been difficult (Futuyma and Mayer, 1980; Futuyma and Peterson, 1985). First, it must be established that populations utilizing different hosts are conspecific and not, in fact, distinct species. Second, characters varying between habitats must have a genetic basis and not be environmentally induced modifications (this is not a particularly strict requirement for allozyme or molecular genetic studies). Third, resource related polymorphism has to be consistent on both fine and broad spatial scales, as well as being temporally stable, to distinguish it from variation due to stochastic processes such as founder effects and genetic drift. Examples of resource associated variation do exist for sympatric populations (for reviews see Diehl and Bush, 1984 and Futuyma and Peterson, 1985) but, in almost all of these cases, the evolutionary and/or geographic origin of the host-insect relationship are not known. True fruit flies in the Rhagoletis pomonella sibling species complex have a biology and natural history which make them ideal candidates for studies of host associated polymorphism and speciation. Rhagoletis larvae are obligate internal parasites in the fruit of their host plants and each member of the R. pomonella group is monophagous or oligiophagous for a different set of host plants (Bush, 1966). Females lay their eggs directly into the fruit of the host plant which they identify by specific visual, tactile and olfactory cues (Bush 1969a,b). Males are attracted by the same cues, 163 and courtship and mating occur almost exclusively on or near the fruits of the host plant (Prokopy et al., 1971, 1972). Because host recognition and mate selection are directly coupled in Rhagoletis, variation for host preference traits can produce genetically based, pre-mating barriers to gene flow. This reduction in gene flow can result in the evolution of partially reproductively isolated host races, and eventually species, adapted to different host plants (Bush, 1966, 1969a,b, 1975). R. pomonella group species and their host plants overlap broadly with one another in their distributions across eastern North America (Bush, 1966) and at no time during their evolutionary history was it likely for geographically isolated fly populations to have existed. This point is most evident in the recent shift of the species R. pomonella from its native host hawthorn (Crataegus spp.) to introduced domestic apple (Malus pumila). Agricultural records indicate a probable origin for the apple infesting fly in the Hudson Valley, New York and document the subsequent spread of the apple fly across the eastern United States and Canada over the last 120 years (Ward, 1866; Walsh, 1867; Bush, 1969a). Hawthorn and apple races of R. pomonella therefore offer a unique opportunity to study the initial stages of the divergence process. The historical timeframe of R. pomonella's shift(s) to apples provides a direct test of whether partially reproductively isolated "host races" can form sympatrically in the absence of prior periods of geographic isolation. The previous studies in this dissertation have shown that sympatric apple and hawthorn populations of R. pomonella are genetically differentiated. Significant gene frequency differences exist for six allozyme loci between sympatric apple and hawthorn populations from across the eastern United States (Chapters 2, 3, 4). These six loci map to 164 three different regions of the genome (Chapter 1) and linkage disequilibrium occurs in natural populations between non-allelic genes within each of these time regions (Chapter 2, 3). The pattern of linkage disequilibrium is similar for apple and hawthorn flies suggesting that inversions are present in different frequencies in the two races (Chapters 2, 3). However, gene frequencies for five of the six loci displaying inter-host differentiation also show significant linear relationship with latitude (Chapters 3, 4). The slopes of these latitudinal allele frequency clines are different, however, between hawthorn and apple flies implying that differential selection occurs both within and between host races across their ranges (Chapters 3, 4). Gene frequency clines among hawthorn and apple populations suggest that host races may not evolve uniformly across their respective ranges. Differential selection caused by vagaries in environmental conditions could dramatically shape the local pattern of intra- and inter— host differentiation. In addition, hawthorn and apple fruits are not necessarily constant resources in either time or space. Host trees can mast and it is not unusual for entire sites to be virtually devoid of fruit in certain years. Mark and recapture studies indicate that adult flies will migrate over distances as great as 2 km when host fruit is not readily available (Phipps and Dirks, 1933a, Bourne et al., 1934; Maxwell, 1968). As a result, founder events and differential migration could drastically affect patterns of host associated polymorphism for R. pomonella. McPheron et al., (1988b) have, in fact, found significant microgeographic allozyme variation among fly populations infesting different hawthorn trees within 210 meters of one another at a field site in Urbana, Illinois. It is, therefore, imperative to characterize local and microgeographic levels of 165 differentiation among host populations as a baseline for assessing processes occurring on broader geographic scales. The current study addresses the issue of local and microgeographic genetic differentiation by examining allozyme variation for apple and hawthorn populations within a 60 km2 area near the town of Grant, in western Michigan (Newaygo Co.). The results indicate that genetic differentiation among apple and hawthorn populations are a microcosm of patterns observed across the eastern United States with inter-host divergence being a consequence of differences in north-south allele frequency clines between the two races. Genetic variation is, therefore, finely subdivided in R. pomonella according to host plant utilization and to local environmental conditions, a result supporting predictions of the niche variation and sympatric speciation hypotheses. Materials and Methods All flies analyzed in this study were collected as larvae from infested ground fruit. At three sites (A, E and H; see Figure 9a; Note: Site E is the original sympatric site analyzed in Chapter 2) in 1987, larvae were dissected from infested fruit and immediately frozen in liquid nitrogen for later electrophoretic analysis. In all other cases, infested fruit was transported back to the laboratory and placed in trays of moist vermiculite. Fruit from individual trees and from different sites were kept in separate trays and covered with fine mosquito netting to prevent larvae from moving between trays. All trays were stored in a greenhouse under constant temperature (210 C) and light (15:9 hr., lightzdark cycle) conditions. After two months pupae were sifted from the vermiculite and Figure 9. 166 Collecting sites for R. pomonella in western Michigan. Panel b is a diagram of local populations sampled within a 60 km2 area near the town of Grant, Michigan. 0 = apple tree, A = hawthorn tree. Panel c gives the distribution of apple and hawthorn trees at site B. A=apple H=hawthom. 167 .o 2:5 a“. ¢< I ...8. L a a n: z. 2. ..m 5N: o NO< 04 .(o 0:1 4.... u 0(0 ‘ a: 2 h( 63 arm 28:; a _a .235 _ [III ’«l LEN ¢u>_¢ 2009.031 ..fl 3N: .. L . ..m 3'0. ... .J. z 2 168 kept at 4° C for five months to simulate winter diapause conditions. Pupae were removed from the cold and held at 21° C, 15 :9 L:D to terminate diapause. Adults were collected when they emerged after 1-3 months of heating and were frozen at -80° C until they could be analyzed electrophoretically. Sympatric hawthorn and apple trees (sympatric being defined as host plants separated by a distance of less than 0.4 km) were individually sampled over a four year period at a centrally located site designated E (Figure 9b,c). Two apple trees and one hawthorn tree at site B were monitored across all four years of the study. Collections were made from other trees in years when enough fruit was available to ensure against population extinction. The year 1987 was exceptional with virtually every tree fruiting in large quantity at site B, except for hawthorn trees 2 and 3. Analysis of microgeographic variation was therefore most extensive in 1987. Local geographic variation was assessed in 1986. Flies from five hawthorn and five apple trees were sampled from within a 60 km2 area surrounding site E (Figure 9a,b). Local hawthom and apple sites were not sympatric but were distributed as uniformly as possible in all directions around site B. In addition, sympatric hawthorn and apple pOpulations were collected in 1987 from sites A and H located approximately 30 km north and south, respectively, of site E (Figure 9a). Standard horizontal starch gel electrophoretic techniques were used and are described fully in Chapter 1 and in Berlocher and Bush (1982). We resolved and scored six different allozyme systems: Malic enzyme (Me), Aconitase-Z (Acon-Z), Mannose phosphate isomerase (Mpi), NADH- diaphorase-Z (Did-2), Aspartate amino-transferase-Z (Aat-Z) and 169 H ydroxyacid dehydrogenase (Had). These were the six allozymes which showed the highest levels of inter-host differentiation in the previous geographic surveys of genetic variation across eastern North America (Chapters 3, 4). Isozymes that migrated the nearest to the cathode were designated 1, the second nearest 2, etc. Alleles were numbered according to their relative anodal mobility to the common allele (100) at a locus. Tables 50-55, which follow the Discussion section on pages 183-188, list a majority of the electrophoretic alleles which were resolved in this study. Only two alleles were scored for the loci Me and Did-2 and so only the relative mobilities and frequencies for the rarer of the two alleles for these allozymes are given in Tables 50-55. Three alleles were scored for the locus Had, but one of these alleles (Had9 7) was very rare and so only frequencies for the second most common allele (Hadlzz) are presented in Tables 52, 53 and 55. A Mendelian mode of inheritance has been established for all six of the loci analyzed in the study (Chapter 1) and electromorphs migrated identically in larval and adult samples. Genotype frequencies were examined for deviations from Hardy- Weinberg expectation by G-tests. Alleles were pooled, if required, so that all genotypic classes had expected frequencies >1. The Levene correction (Spiess, 1977) was applied when sample sizes were < 100 or when it was not possible to pool alleles to make the expected frequency for all genotypic class >1. Allele frequencies were analyzed for significant heterogeneity between host plants and across time and space using G-contingency tests. Allele frequencies were pooled, when necessary, so that each cell in the G- contingency test had a frequency 2 5. F-statistics were calculated by the method of Weir and Cockerham (1984) with standard deviations estimated by jackknifing over populations, years or loci. Corrections for unequal 170 sample sizes in the method of Weir and Cockerham can result in negative FST values. In these instances we report FST as 0. One of the F-statistics, f (the correlation of genes within individuals within populations 2 F13 of Wright, 1951) was determined independently for each population from allele frequency data (see Barker et al., 1986). Multi-allele f values were tested against the null hypothesis of f=0 by a Chi-square, single-degree of freedom test (Barker et al., 1986). Results Results are presented sequentially for either one locus or two loci at a time. We first discuss the microgeographic pattern of differentiation for a gene(s) on a tree by tree basis at site B and then follow with a description of genetic variation among local R. pomonella populations in the surrounding area. m2 Significant allele frequency differences between apple and hawthorn flies were observed for Acon-Z on both local and microgeographic scales. At site B, Acon-Z displayed significant inter-host differentiation in each of the four years of the study but showed no significant intra-host variation within any year (Tables 44, 50, 51). Gene frequencies for Acon-Z were heterogeneous for hawthorn flies across years at site B (Table 45). However, intra-host temporal variation neither overlapped nor was of similar magnitude as inter-host differentiation (Tables 50, 51). F-statistics quantify this point. The FST value for Acon-Z calculated for both host populations over years at site B (0.0604 _-l; 0.0136, jackknife estimate of standard deviation calculated over years; Table 46) was 6 x greater than the 171 3...:me— H N: .0 303. 200.0 *AHv0.v ......AHVHfi add .m 2%. 8 088388: 88:80 22? $8-82: 08 ..EE é 98. 88388-0 5mm .63 ......ACHd 2.32013 .934. N84 ...:vadm 8:. :0: 3900.2 ...:AVVNHN $.va 800.2 «and— .....:..€: .5 AvaN Nana ......wAandH .....SANVm.nH LNVHS *9.va H 000; .....SANVVNM N: .H .33 -- ....A :3 SEA 8; 2&3. -- ......8...$ 93:; use 2%... 3:88 -- 38-2%? season 53 38 ea... 5: $82. 61o .104.” $2... 29:. mace... £2 I I 882$ out. 203. I I mBaIN RE. 2%? I I 28:; 8F 2%? I I m 8:. Ba:-mo_&< .. I N 8.0. 3am-8_&< I I H 08,—. Bam-8_&< ......a: .3. ......czu 8 33-2%... $028 65.2 a; .o ”8:. 2.: $8.... 602 a: .m “8:. 2&3. «:82 22 I I m3amN out. 20.? I I 33:; 02... 29?. Inseam .....c:..£ 33-2%... 5253 58 38 see 2%... ass... 8% .3.qu 42. 8H 8H .3. 29¢ 172 .3 ooh 32-33% .06 .8: 85¢ 2.. 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I 55 A252 8:3 59w ......8:_.n~ .....va9 < 8% .82 «:82 L00.” ANS~.3 ...:Amvvdfi ...:GV—AN «......vadm .138:de I 3va ...:ANGmfim 3va 3:6 33.2 356 < m 03mins?» mmob< add Maud Mag .33 «Maud d2 add duH “8055.3.“ 5 :03» 2a 33 Be 803 ..o 82on .mcousaom Ev F8532 98 A3 03% .82 macaw can m 3% a who.» 38% £05388: >So=§ 30:“ .8.—-555 Bu v.33 aocowaucoaé .3 03¢ 174 datum—g 060:0» 12882 65 605883 .8.. :00an 860825 05 .6 36853262 28205 8a 83? .8.. 506 gens—=28 26 E 68205 93 meg Egg“: 65 03% 53 5:3 82? ,5”. 05 Ba 98: :86 o 68— .85 03868 0.630% - 863306 6.3655 n .30» ~05 25:68 0.630% - 59656 6.36536 « 6366 H 2.86 6866 H 69666 6~666 H 66666 2666 H $.86 356 H «~86 6966 H 3666 mm~66 H 66.66 final 6366 H #6666 3666 H «866 6866 H 3666 66666 H 6866 «6666 H 9266 3666 H 66666 6366 H 6366 3 6866 H 66666 6866 H 3666 n 566 H n 566 3666 H 66666 5366 H 556 3666 H 9666 5266 H 8666 «6666 H 2666 N366 H N866 6N666 H 3666 6866 H 3666 3666 H 6666.6 3666 H 2666 6866 H 2666 6866 H $666 66866 H 3666 6266 H $666 3666 H 3666 6266 H 66666 66666 H 6666.6 3666 H 2666 2666 H 6 6666 g “2un :6 N mud” unamd 6866 H 6666.6 N866 H 3666 66666 H 66666 3666 H 6666.6 2666 H :666 «me—66 H :86 _ uflH uamd .m 27. 8 moo: E9632 6.3 03% .56 E3» 828 9.66: 8568.80 65 60>» ..o 3508 05 .3 Esau—3 32? pm”— _8_ =< Ex $2 35 a: N-:Ou< 0: good 9 23. 175 value for hawthorn flies alone (0.0099 _-t_- 0.0095) and over 50 x greater than the PST for apple flies (0.0015 i 0.0025). The allele frequency differences found between apple and hawthorn flies at site B suggest that differential selection may be occurring between the host populations. However, if selection occurs for Acon-Z, its effects were not reflected in genotypic deviations from Hardy-Weinberg expectation within host populations. Only 3 out of a total of 96 tests showed significant deviations for Acon-Z when individual host trees were analyzed within years (Tables 50, 51). In addition, individual tree f values at site B showed no trend for either an excess or deficiency of heterozygotes (Table 47). Inter-host differentiation for Acon-Z was also consistent across the 12 local apple and hawthorn populations analyzed in 1986. The highest frequency for the allele Acon-295 in any apple population was 0.268 at site D (Table 54). In comparison, the lowest frequency for Acon-295 for a hawthorn population was 0.392 at site B (0.392 represents the pooled Acon- 295 frequency among hawthorn trees at site B in 1986 and also happens to be the lowest frequency observed for hawthorn flies at site B for all four years of the study, the next lowest frequency being 0.479 in 1987; Table 54). Nevertheless, allele frequencies for Acon-Z were still significantly different in 1986 between apple flies at site D and hawthorn flies at site B (G-contingency test = 6.3, B 5 0.05, 2 df). Acon-295 allele frequencies among local hawthom populations fit within a broader geographic pattern of latitudinal clines observed across the Midwest (Chapter 4). Local hawthorn populations I through M had Acon-295 frequencies that were bracketed within the range of values found for hawthorn flies at site A (0.619) and site H (0.392) located 176 Table 47 . Disu'ibution of f values (: Fm of Wright, 1951) for individual populations calculated by the method of Barker, East and Weir (1986). The number of f values significantly greaterorlessthanOaregivenin parentheses. 119.911.513.929 Me 16 Acon-2 10(1) Mpi 19(2) Dia-2 12(1) Aat-2 9(1) Had 10 All loci 76(5) 8 8(3) 4 14(1) 8 4 5 9(1) 3 12 9 3 15(2) 3 9(1) 14(2) 8 4(1) 68(5) 45(4) 27(2) 24(3) 18(1) 28(3) 21(1) 12(1) 18 120(9) 125.0111 1.3.0ng 12 18(1) 8 15 24(3) 18(3) 96(7) 177 approximately 30 km north and south, respectively, of site B (Table 54, Figure 9). However, Acon-295 allele frequencies in 1986 still fluctuated between 0.571 at site L and 0.392 at site B. Latitudinal clines for Acon-295 were, therefore, not perfect across local hawthorn populations. Acon-Z also showed significant intra-host variation among local apple and hawthorn populations (Table 45 ). For example, the frequency of Acon-275 was 0.250 in hawthorn population K compared to 0.038 at hawthorn site I (Table 54). The same was also true for local apple populations where Acon-Z 75 varied in frequency from 0.205 to 0.026 (Table 54). Despite the significant amount of local variation for Acon-Z, only Amt-295 at site I showed a significant deviation from Hardy- Weinberg equilibrium for this locus out of a total of 88 tests (Table 54). Also, local intra-host heterogeneity for Acon-Z did not overshadow inter- host differentiation. The F31 values among local apple (0.0103 i 0.0074; Table 48) and hawthorn populations (0.0127 :1; 0.0098) were approximately 4 x lower than the value across all host populations (0.0472 i 0.0184). 11:311de Me and Mpi also displayed consistent microgeographic differentiation between apple and hawthom flies at site E (Table 44). However, unlike Acon-Z, significant intra-host variation was observed for Me and Mpi within years. Me varied significantly among apple trees at site B in both 1986 and 1987 (Table 44). However, inter-host allele frequency differences for M6” were never less than 0.100 and were usually greater than 0.200 between any chosen pair of hawthom and apple trees within a given year (T ables 50, 51). PST values for Me of 0.1233 :1: 0.0313 across Table 48. Locus Me Acon-2 Mpi Dia-2 Aat—2 Had All loci 178 F31- values for local apple and hawthorn populations calculated by the method of Weir and Cockerham (1984). _ADRL._ 0.0185 1 0.01598 0.0103 1- 0.0074 0.0093 1 0.0086 0.0084 1: 0.0067 0.0018 3 0.0060 0.0000 x 0.0036 0.0071 i 0.0032b _flamhm— 0.0000 i 0.0043 0.0127 :1; 0.0098 0.0000 i 0.0018 0.0202 1; 0.0180 0.0801 i 0.0598 0.0092 :9; 0.0147 0.0321 i 0.0230 m 0.0406 i 0.0141 0.0472 1 0.0184 0.0214 i 0.0169 0.0384 i 0.0177 0.0427 1 0.0354 0.0038 : 0.0049 0.0395 3 0.0046 a Standard deviation- jackknife estimate over sites. b Standard deviation- jackknife estimate over loci. 9 Both hosts are F31 values when both local apple and hawthorn populations are included in the calculations. Both host values therefore represent the interaction between host associated and spatial genetic variation. 179 .8» 555 m 3% 8 5635.058 088» “8:83 .«o 83:68 0338 0255 38: 56m 6 .28» 5.23 count? 063% 0268838? 3.2.8.5 .«e .08. 05 ©6536 83? 9mm E6533 65 3%? o .82 8>e 895.8 06503 - 56386 Essa a .8» 8>o 3258 £65.82 - 56386 68653 a an 56 H 63.66 2666 H 2666 2866 H 3666 856 H 6266 3666 H 66666 6366 H 6686 «.366 H 3666 3666 H 3666 9666 H 6866 $86 H 3.86 3.86 H 3666 6266 H 886 66666 H 9266 #866 H 6866 6866 H 9666 «~56 H 936 ”N666 H 66666 3666 H 386 6686 H 3.86 @366 H 8666 66666 H 3.666 Handmade! Inga: landfill gm— mNN66 H 6636 9.666 H 9666 63666 H «6666 2.56 H 386 @866 H 66666 6366 H on 86 2.86 H «N56 3666 H 8666 6266 H @6666 386 H 386 6966 H 3666 386 H N366 :86 H 6686 @366 H 3666 2.666 H 66666 386 H 63.66 356 H $666 6866 H 66666 286 H mug—6 6866 H 8666 «6986 H N686 35%| lasagna Ieauaqolt www— .Avwg 6 eafioxooo e5 no; do 858. o... .3 Beanie 5% cs 22 5 m 2e. a noon 2%: one .8532 ace 8.? a". 3 5. on: 22 25 a: «-83. oz 3&4 6v 035. 180 all host trees at site B in 1985 (Table 49) and 0.0844 :1; 0.0269 in 1987 document the substantial amount of inter-host differentiation for this locus. Mpi displayed significant heterogeneity among apple trees at site B in 1986 and among hawthorn trees in 1985 (Table 44). However, uner Acon-Z and Me, apple and hawthorn populations overlapped slightly in their gene frequencies for Mpi in 1987. Hawthorn tree #4 had a frequency for Mpi100 of 0.860 in 1987 while apple tree #4 had a frequency of 0.858 (Tables 50, 51). Within no other year was the frequency of Mpi100 greater for a hawthom tree than for an apple tree. In fact, the pooled Mpi] 00 gene frequency for hawthorn trees at site B was still significantly different from that for pooled apple trees even ill 1987 (G-test = 24.2, 13 5 0.001, 1 df; Table 44). However, the magnitude of inter-host variation was much less for Mpi than for either Acon-Z or Me as evidenced by the lower FST values calculated for Mpi across both hosts in 1985 and 1987 (0.0390 -_l-_ 0.0171 and 0.0145 1; 0.0089, respectively; Table 49). Gene frequencies for Me and Mpi at site B varied significantly across years for hawthorn flies but not for apple flies (Table 45). The result was indicative of a general trend in the partitioning of intra-host differentiation at site B. Hawthorn flies showed greater temporal heterogeneity than apple flies. The overall Fs'r value across years for all six loci was almost 5 x higher for hawthorn populations (0.0084 i. 0.0040; Table 46) than apple populations (0.0017 i 0.0002). In contrast, apple flies displayed higher levels of spatial differentiation within years at site B. This was exemplified by the 5 x larger Fs'r values for all loci among apple trees in 1985 and 1987 (0.0062 i 0.0051 and 0.0064 :1; 0.0031, respectively; Table 49) compared to hawthorn trees (0.0015 i 0.0043 and 0.0013 _-l_- 0.0013). 181 Local differentiation for Me and Mpi was similar to the pattern of microgeographic variation observed for these loci at site B. Hawthorn populations I through M showed limited spatial heterogeneity for Mpi and Me in 1986 (Fs'r = 0.0000 for both loci across hawthorn sites; Table 48). In comparison, apple populations displayed higher levels of local spatial diversity (FST Me = 0.0185 1: 0.0159, Fs-r Mpi = 0.0093 i 0.0086). In fact, significant allele frequency heterogeneity existed among local apple populations for Me (G-contingency test = 16.4, E g 0.01, 5 df; Table 45). Inter-host differentiation among local host populations, while not as great as that observed for Acon-Z, was also apparent for both Me and Mpi. Fs'r values for Me and Mpi across all 12 local host populations were over 2 x greater than the values calculated for apple populations alone (Table 48). Mpi allele frequencies were homogeneous among both local apple and hawthorn populations (Table 45), while pooled hawthorn and apple Mpi frequencies were significantly different from each other (G = 33.4, B _<_ 0.001, 1 df). Local apple and hawthorn populations overlapped in Mpi100 allele frequencies, however. Apple sites B and C both had Mpi100 frequencies below that of the highest hawthorn population at site I (Table 54). Mpi100 frequencies for local sites therefore formed a continuum, with apple populations tending to have higher frequencies than hawthorn populations. A similar pattern was also observed for Me”. However, unlike Mpi, local differentiation for Me can be partly explained by gene frequency clines. All apple populations north of site B had M e80 allele frequencies 5 0.560 while all sites south of E had Me80 frequencies _>_ 0.630 (Table 54). Apple site B fluctuated in frequency between 0.578 and 0.671 from 1984 to 1987. Local hawthorn sites displayed similar clinal tendencies with northern populations generally having lower Me80 182 frequencies than southern populations (Table 54). Inter-host differences for Me were therefore superimposed on clinal patterns of variation, with apple flies having higher Me80 allele frequencies than hawthorn flies at every site where sympatric populations were sampled (sites A, E and H; Table 54). Genotypic proportions for Me and Mpi showed general trends for an excess of heterozygotes at both the local and microgeographic levels. Twenty four and 28 out of a total of 36 f values were negative (indicating an excess of heterozygotes) for Me and Mpi , respectively (Table 47 ). Three f values out of 36 were significantly less than 0 for both Me and Mpi. Aat-Z and Die-2 had roughly equivalent patterns of genetic differentiation as Mpi. Both loci showed significant microgeographic variation among apple trees at site B within 2 of the 4 years surveyed (Table 44). For the two years when intra-host gene frequencies were homogeneous for Die-2 or Act-2, significant inter-host differences were observed (Table 44). However, frequencies for Did-285 and Act-2100 overlapped between apple and hawthorn trees in both 1985 and 1987 (Tables 52, 53). A spectrum of gene frequencies was therefore also seen for Dia-Z and Aer-2 at site B. Hawthorn trees tended to reside on one end of the frequency distribution and apple trees on the other with certain trees (apple trees # 2, 7 and hawthorn tree # 1, 5) overlapping in the middle of the spectrum (Tables 52, 53). Aat-Z was unusual in that it was the only locus which varied significantly across years for apple flies at site B (Table 45). Did-2 displayed the normal temporal pattern showing heterogeneity across years for hawthorn but not for apple populations (Table 45). 183 Die-2 and Aat-Z had the highest Fs'r among the six local hawthorn populations (0.0202 _+_ 0.0180 and 0.0801 :1; 0.0598 respectively, Table 48). Intra-host variation for Aat-Z among local hawthorn populations was actually greater than inter-host levels observed for Me and Acon-Z (Table 48). For example, Ant-250 varied in frequency from 0.256 to 0.083 between hawthorn sites I and M while Ant-221 changed from 0.0191 to 0.050 between sites L and M (Table 55). Inter-host differentiation still existed for both Aat-Z and Dia-Z, however, as rim-2100 and Die-2100 gene frequencies were generally higher in local hawthorn than apple populations (Table 55). In fact, pooled Did-2 allele frequencies across hawthorn and apple sites were significantly different from one another in 1986 (G-contingency test = 23.4, E _<_ 0.001, 1 df). However, just like Mpi] 00, inter-host frequency differences for Aar- 2100 and Did-2100 were not discreet and overlap was found among local hawthom and apple populations. Die-2100 did not display a local pattern of variation within either host race that was indicative of a latitudinal frequency cline. Aat—Z 75 did show a hint of a frequency cline among local apple populations (Table 55), yet the allele did not co-vary significantly with latitude in a broader geographic survey of apple populations from Michigan through Indiana (Chapter 4). Aat—Z was unusual in that it was the only locus which displayed a trend for an excess of homozygotes (positive f values; Table 47 ). Four f values for Act-2 were significantly different than 0 out of a total of 36 tests (Table 47). Genotype frequencies for Aat-Z therefore deviated from equilibrium proportions more often than expected by chance. 184 lied Had showed intra-host variation at both the local and microgeographic levels but only the slightest trace of inter-host differentiation. Had varied significantly among apple trees at site B in 1984 and 1987 as well as between hosts in 1985 (Table 44). Allele fiequencies for the locus were heterogeneous for hawthorn flies across years at site B as well as among local hawthorn populations in 1986 (Table 45). However, Had displayed lower levels of inter-host differentiation between local hawthorn and apple populations than any of the other five loci analyzed in the study (Fs'r Had = 0.0038 i 0.0046; Table 48). In addition, no geographic pattern of variation was discemable for Had allele frequencies. Had f values were equally divided between positive and negative estimates (Table 47). Discussion The results of this and the preceding studies confirm that partially reproductively isolated host races of phytophagous insects can evolve in sympatry by shifting and adapting to new host plants. R. pomonella ' populations are genetically finely subdivided according to the species of host plant they infest; a result which agrees with predictions of the niche variation hypothesis. Even for different species of host trees within 100 meters of one another at site B, Memo and Accra-295 allele frequencies are significantly higher for hawthorn than apple flies. Inter-host differentiation is also stable over time. Although allele frequencies for Me100 and Acon-295 did vary significantly for hawthorn flies at site B over a four year period, intra-host variation did not compare ill magnitude 185 or overlap in frequency with inter-host differences. Me and Acon-Z are in fact, closely linked on chromosome II in R. pomonella (Chapter 1) and disequilibrium has been found between non-allelic genes for these two loci in natural fly populations (Chapters 2, 3). The similar pattern of microgeographic variation for Me and Acon-Z is therefore not surprising and suggests that selection in this region of the genome is causing genetic hitchhiking effects among linked loci. Genetic studies of R. pomonella suggest that differences in host recognition and host associated survivorship are two important factors differentiating fly populations infesting hawthoms and apples. Mark- recapture studies and larval transplant experiments would help determine the extent to which these factors reduce gene flow between the two host races. The fine level of inter-host divergence revealed in this Chapter indicates that reproductive isolating mechanisms can be reliably examined even for local R. pomonella populations. Evidence already exists indicating that adult flies do not randomly migrate between different species of host plants. Adults eclosing from under and collected directly from off of hawthorn and apple trees at site E showed the same pattern and magnitude of inter-host divergence as larvae sampled from ground fruit (Chapters 2, 4). R. pomonella therefore tend to utilize the same species of host plant as adults which they infested as larvae. We do not know whether inherent, genetically based differences in host recognition and/or conditioning in adults (Prokopy et al., 1982) cause this bias ill host choice but mark- recapture and larval transplant experiments could be designed to specifically address this issue. The association between mate and habitat selection for R. pomonella host races has important implications for the modeling of non—allopatric 186 speciation. The theoretical work of Felsenstein (1981) has often been cited to support the view that sympatric speciation is a rare phenomenon in nature (Futuyma and Mayer, 1980; Butlin, 1987). However, in Felsenstein's model individuals randomly select habitats, an assumption which is not valid for R. pomonella group flies and potentially many other phytophagous and parasitic insects (Price, 1980; Diehl and Bush, 1984). More recent theoretical studies (Bush and Diehl, 1982; Rice, 1984; Diehl and Bush, 1989) indicate that sympatric populations can differentiate rapidly when mating is confined to specific habitats chosen by the animals. These models suggest that non-allopatric divergence is as much, or more dependent, on the fidelity of habitat related assortative mating than on the sheer intensity of differential selection within habitats. This consideration has not been adequately appreciated in our understanding of how heterogeneous environments maintain genetic diversity and promote speciation. An interesting implication of my work is that host races may not evolve uniformly across their ranges. Gene frequency clines, although not perfect, were observed for Memo and Acon-295 even across the limited geographic area surveyed in this study. Inter-host differentiation for Me and Acon-Z is, therefore, superimposed on north-south clinal patterns of intra-host variation. Besides Me and Acon-Z, however, none of the other four loci analyzed, with the possible exception of Aat-Z for apple flies, showed a distinct pattern of clinal variation among local populations. However, Mpi, Dia-Z and Had do display latitudinal allele frequency clines when analyzed on a broader geographic scale across the midwestem United States (Chapter 4). For a number of reasons discussed in Chapters 3 and 4, secondary contact is an unlikely explanation for the observed frequency 187 Clines. Instead, environmental factors affecting R. pomonella appear to be experienced ill a graded fashion from north to south, with the two races being differentially affected at a given latitude. Environmental gradients are rarely exact, however, and vagaries in local environmental conditions can obscure broader geographic patterns of genetic variation. This could account for why allele frequencies for Mpi, Did-2 and Had were not correlated with latitude among local populations despite showing clinal patterns of variation across the Midwest. Differences in micro-environmental conditions could also explain the pattern of intra-host variation at site B. Although apple flies at site B had higher levels of intra-host variation within years than hawthorn flies, hawthorn populations were more variable across years. This suggests that differences exist in the environmental "buffering capacities" or "selective constraints" imposed by the two species of host plants, with flies attacking hawthoms being more acutely affected by environmental fluctuations than flies infesting apples. Buffering capacities may vary more among individual apple trees than hawthorn trees, however, accounting for the higher levels of intra-host variation for apples within years. Indirect support for this hypothesis comes from the fact that apple tree #1 at site B, the most variable apple tree across years, also deviated the most in allele frequencies from the other apple trees within years (Tables 50-53). In addition, egg to pupal survivorship is known to fluctuate widely among different varieties of apples (Phipps and Dirks, 1933b; Reissig, 1979), with flies surviving better on earlier, sweeter varieties. Reciprocal egg transplant experiments, among different apple and hawthorn trees at site B, are needed to directly test the environmental buffering hypothesis. 188 The discussion has thus far concentrated on the importance of deterministic factors in influencing the genetic structure of fly populations. However, stochastic processes undoubtedly interact with selection to shape local and micro geographic pattems of genetic differentiation. Aat—Z represents the best example of this. High levels of intra-host variation exist for Ant-221, Aat-250 and Act-2 75 among local hawthorn populations. The pattern of differentiation for these alleles appears to be random among sites which suggests the action of genetic drift. Aat~2 gene frequencies are not totally dictated by chance, however. Allele frequencies for Act-2100 are generally higher in hawthom than apple populations (Tables 52, 5 3, 55). In addition, genotypic frequencies for Aer-2 reveal a significant trend for an excess of homozygotes (Table 47) and deviate from Hardy-Weinberg equilibrium more often than would be expected by random chance (Table 47). The excess of homozygotes for Aer-2 could be due to selection, errors in enzyme scoring caused by a silent alle1e(s), positive assortative mating within host populations or a Wahlund effect resulting from population subdivision on a fine scale. The latter possibility seems unlikely because none of the other five loci analyzed had a surplus of homozygotes (Table 47). Population sub-structuring should affect neutral genes in an equivalent manner. Consequently, the lack of a significant excess of homozygotes at loci besides Aat-Z argues against a Wahlund effect. Positive assortative mating within apple and hawthonl populations based on Aat-Z genotypes is also unlikely. Did-2 is closely linked to Aat—Z (Chapter 1) and non-allelic genes for these two loci show substantial amounts of linkage disequilibrium in natural populations (Chapters 2, 3). If non-random mating were occurring relative to Aat-Z, its effects should 189 also be apparent for Dia-Z. However, Die-2 had an excess of heterozygotes thereby making assortative mating an improbable scenario. Little information is currently available on the frequencies of null alleles in Rhagoletis populations. Null alleles appear to be relatively rare in natural populations, however (Langley et al., 1981). In addition, no individual was observed to be homozygous for a null allele out of a total of 2,729 flies scored in the study. Although we cannot completely rule out the possibility of null alleles, selection at or near the Aat-Z locus is the most probable explanation for the excess of homozygotes. The loci analyzed in this study therefore appear to represent a continuum in terms of the inter-action of evolutionary processes. Me and Acon-Z form one side of the spectrum with allele frequencies for these two loci primarily determined by selection. In contrast, genetic drift may play a larger role in influencing local patterns of variation for Aer-2 and Had. There is no reason to assume, however, that selection acts directly on M e, Acon-Z, Mpi, Die-2, Act-2 or Had. The map distances of these six loci to genes actually under differential selection must, therefore, also be considered when interpreting the relative importance of stochastic versus deterministic processes. To quantify the interplay between natural selection and genetic drift requires detailed analyses of the distribution and movement of adult flies. First, estimates of effective population sizes are needed for local hawthorn and apple populations. Second, we must determine whether adults confine their reproductive activities to a single tree (perhaps the same tree they infested as larvae) or several different trees at a site. Finally, neighborhood sizes must be established for R. pomonella which require estimates of migration rates among local populations. Previous work indicates that R. 190 pomonella adults can travel over distances of up to 2 km (Phipps and Dirks, 1933b; Boume et al., 1934; Maxwell, 1968) but that most flies disperse less than 60 m from release plants (Neilson, 1971; Buriff, 1973; Reissig, 1977). Maxwell (1968) and Reissig (1977) both report the proportion of apple flies remaining on a release tree as approximately 10%. This implies that adult flies distribute their reproductive capacities among a number of different apple or hawthorn trees. If true, then either differential selection on larvae or differential fecundity among adults must be responsible for the observed microgeographic genetic variation among apple trees at site B. In addition to being spatially patchy, host resources are also temporally variable. Partial or complete fruit failure can dramatically affect population structure. For example, in mast years entire local sites can be virtually devoid of host fruit. On a microgeographic scale, hawthorn trees #2 and #3 at site B usually had large fruit loads. However, these two trees bore no fruit in 1987 . Adult flies emerging from under hawthorn trees #2 and #3 in 1987 were, therefore, forced to disperse in search of suitable host fruit. Such forced migrations would greatly increase mixing within and among local fly populations and could account for the general trend for an excess of heterozygotes for loci in this study (Table 47). Ill addition, adult flies may not randomly recolonize hawthorn trees #2 and #3 in subsequent years. Founder events could therefore play an important role in affecting the pattern of genetic differentiation at site E. The diapause characteristics of R. pomonella may ameliorate some of the effects of mast years, however. In both the field and the laboratory, a certain proportion of pupae (ca. 10%) require exposure to more than one cycle of chilling and heating before eclosing as adults (Phipps and Dirks, 1933b). Adults emerging after two winters would tend to homogenize gene 191 frequencies over years for trees experiencing fruit failure provided, of course, that the loci analyzed are not involved either directly or indirectly with diapause termination. This later assumption may not be true, however, as preliminary studies indicate a relationship between allele frequencies for Me, Acon-Z and Had and the timing of adult eclosion for the hawthorn race (Feder et al., manuscript in preparation). Continued monitoring of hawthorn trees #2 and #3 would help tease apart how diapause and founder effects influence gene frequency distributions within and among fly populations. The results of this study indicate that local and microgeographic genetic variation for hawthorn and apple flies are a microcosm of the patterns observed across eastern North America. Detailed examination of local demes will therefore provide useful information concerning the processes involved in host specialization and population divergence. Further studies are needed to discern exactly how selection, drift and migration interact to produce the fine level of genetic subdivision observed for R. pomonella. Perhaps foremost, we must identify the nature and mode of action of selective factors differentially affecting apple and hawthorn populations. Previous studies indicate that ambient temperature has an important influence on the phenology of host-parasite interactions for R. pomonella (Prokopy, 1968; Reissig et al., 1979; also see Chapter 4). Temperature is a key factor in the initiation, maintenance and termination of diapause in these flies (Prokopy, 1968; Reissig et al., 1979) and, of course, has a direct effect on the phenology of fruit maturation for host plants. Apple and hawthorn flies do, in fact, differ in the timing of adult eclosion with apple flies emerging consistently earlier than hawthom flies in both the 192 laboratory and the field (Diehl, 1984; Smith, 1986, 1988; Feder er al., manuscript in preparation). Temperature also correlates with latitude, which could account for the observed north-south frequency clines in R. pomonella. The temperature/development hypothesis therefore requires serious consideration and further empirical testing. Positive correlations between genetic diversity and environmental variation have been documented for populations both in the laboratory (Powell, 1971; McDonald and Ayala, 1974; Powell and Wistland, 1978) and in the field (Clarke, 1968; Berger, 1971; Dobzhansky and Ayala, 1973; Kettlewell, 1973; Taylor and Powell, 1976; Saul et al., 1978; Mully et al., 1979; Steiner,l979; Franklin, 1981; Barker et al., 1986; Lynch, 1987). The finding of significant allozyme variation between host associated races of R. pomonella indicates that in addition to environmental heterogeneity in time and space, biotic considerations related to host-parasite interactions can also promote and maintain genetic polymorphism in populations. Furthermore, because R. pomonella is an economically important pest species, much is known about the fly's ecology, behavior and natural history (see review by Boller and Prokopy, 1976). This information, combined with the recent formation of several new host races in the species (Herrick, 1920; Bush, 1966; Shervis er al., 1970; Prokopy and Bush, 1972; Prokopy and Berlocher, 1980) makes R. pomonella a unique organismal system for understanding evolutionary processes within a real time framework. In addition, many of the sibling species in the R. pomonella group, although distinct in nature, can be hybridized in the laboratory to produce viable and fertile F1 progeny. Experiments can therefore be performed to elucidate the genetic basis of traits responsible for restricting gene flow among R. pomonella flies. 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Chapter 6 Concluding Summary and Remarks "One would think that it should no longer be necessary to devote much time to this topic, but past experience permits one to predict with confidence that the issue will be raised again at regular intervals. Sympatric speciation is like the Lemaean Hydra which grew two new heads whenever one of its old heads was cut off. There is only one way in which final agreement can be reached and that is to clarify the whole relevant complex of questions to such an extent that disagreement is no longer possible". 13. Mayr (1963, pg. 451) In this dissertation, I have shown that apple and hawthorn populations of R. pomonella are genetically differentiated host races which arose in sympatry. I first reported the observation of significant inter-host allele frequency variation for six allozymes (Me, Acon-Z, Mpi, Dia-Z, Aat-Z and Had) at a field site near the town of Grant, in western Michigan. A number of alternative, but not mutually exclusive, causal explanations were present which could account for the genetic difference. Most importantly, however, adults captured directly from off of host trees showed a similar pattern of inter-host variation as larvae reared from host fruits. Adult flies are therefore not randomly migrating between different species of host 200 201 plants and, as a consequence, hawthorn and apple flies are not randomly mating in nature. Differential host utilization is therefore a key factor restricting gene flow between the host races; a finding consistent with predictions of sympatric speciation models in which host race formation represents the initial stage of the divergence process. I next verified a Mendelian mode of inheritance and determined map positions for the six allozymes displaying allele frequency differences between the host races. Did-2 and Aat-Z were shown to be separated by a distance of 3.2 centimorgans on linkage group I, while Me, Acon-Z, and Mpi were found to be tightly linked on chromosome 11. Had was localized on linkage group III. The six loci showing differentiation between apple and hawthorn populations therefore mapped to only three specific regions of the genome. A genetic basis of inheritance and linkage associations were also determined for three other previously unresolved allozymes. One of these three loci, Aspartate amino-tran.sferase-I (Aat-I ), was found to be sex linked and indicated for the first time that males are the heterogametic (XY) sex in R. pomonella. In addition, significant gametic disequilibrium was observed between pairs of linked, non-allelic genes in the laboratory strain used for the genetic mapping experiments. The pattem of linkage disequilibrium for non-diapausing flies was different from that seen in natural populations, however, suggesting that the laboratory line has become genetically modified during culture. A geographic study of allozyme variation was then conducted for hawthorn and apple populations from across the eastern United States and Canada. The results showed that host associated genetic divergence is widespread across the range of R. pomonella and is primarily due to the same six loci which varied at the Grant, Michigan site. Although genetic 202 variation was much less among apple than among hawthorn populations across eastern North America (consistent with the apple race having gone through a recent bottleneck), the pattern of geographic differentiation gave no genetic clue as to the original source of the apple race. In addition, high levels of linkage disequilibrium were observed between loci within, but not between, each of the three genomic regions displaying host related differences. The patterns of disequilibrium among loci were similar, however, between apple and hawthorn flies. Therefore, although at least three specific regions of the genome of R. pomonella are co-evolving , the relationships among genes within these regions are the same for the two host races. Consequently, it is just the frequencies of certain gene or chromosomal "blockS" which differs between apple and hawthorn populations; a result which suggests that inversion polymorphisms exist for these regions and are promoting hitchhiking effects by reducing recombination among linked loci. Furthermore, epistatic interactions were not found between the different chromosomal regions displaying racial variation. Taken together, these data indicate that host race formation and, by implication, speciation, in the R. pomonella group involves genetic ' changes at only a few key loci, rather than a "revolution" involving a restructuring of genetic interactions throughout the genome. Latitudinal allele frequency clines were also found among both apple and hawthorn populations for a majority of the allozymes displaying inter- host variation. The slopes of the allele frequency clines were different for apple and hawthom races, however, being much steeper among hawthorn than apple populations. Inter-host genetic differentiation is therefore superimposed on clinal patterns of variation within the host races such that the magnitude of host associated divergence is a function of latitude. The 203 allele frequency clines suggest that the host races are not experiencing uniform selection pressures across their ranges but instead may be strongly influenced by local environmental conditions. The configurations of the allele frequency clines do, in fact, implicate ambient temperature as an important environmental parameter affecting host-parasite interactions for R. pomonella. Allele frequencies for two loci (Aconitase-Z and Malic enzyme) in the hawthorn race correlated with irregularities in isothermal clines for growing degree days (base 500 F) in the states of Wisconsin and Michigan. Furthermore, allele frequencies changed most dramatically for both apple and hawthorn populations across three areas in the Midwest that mark major ecological transition zones. Variation in voltinism and host plant associations are now known for a number of different phytophagous insects across these three regions indicating that environmental changes within these areas have a general impact on the evolution of life history traits for insects. Finally, I examined local and microgeographic genetic variation among and between apple and hawthorn populations within a 60 km2 area surroundinggthe original field site near Grant, Michigan. The results indicated that local and microgeo graphic genetic differentiation for these flies are a microcosm of the patterns seen across eastern North America. Even for trees separated by distances of less than 100 meters at the Grant site, Malia Enzyme] 00 and Aconitase-295 allele frequencies were always significantly higher for hawthom than apple flies every year over a four year period from 1984 to 1987. The two loci also showed a similar pattern of inter-host differentiation across 12 local populations analyzed in 1986. However, the local pattern of genetic variation was not identical to that seen at the Grant site as allele frequencies for Me and Acon-Z showed a general 204 correlation with latitude even across the limited area surveyed in the study. Although genetic drift and founder effects undoubtedly shape the fine scale spatial and temporal pattern of genetic variation for R. pomonella, differences in host recognition and host related survivorship had to be invoked to account for the maintenance of genetic differentiation between apple and hawthorn races. The data therefore agreed with the niche variation hypothesis that differential selection in heterogeneous environments promotes genetic polymorphism and lent further support to a sympatric mode of divergence for R. pomonella. Several important questions still need to be answered concerning speciation in the R. pomonella group, however. First, we need to have a better understanding of the factors involved in differentiating R. pomonella populations. This requires establishing the extent of and mechanisms responsible for host plant fidelity and host associated survivorship, determining exactly how temperature acts as a differential selective factor, and estimating levels of effective gene flow among and between apple and hawthorn populations across the range of R. pomonella in North America. Second, we must more accurately quantify the extent and pattern of genetic divergence between host races and sibling species in the group. At least three genomic regions show host associated allele frequency differences. Are these the only regions of the genome containing genes responsible for the formation of the apple race or are more, as yet unidentified, regions involved? Do sibling species in the group show greater amounts of genetic variation in the same regions of the genome which display racial differences or are species specific mutations randomly scattered throughout the genome? What is the nature of genetic change within genomic regions differing among the host races and sibling species (do base pair 205 substitutions, additions or deletions predominate?) and what phenotypic traits do these regions encode? High levels of linkage disequilibrium were found between non-allelic genes within the three regions of the genome displaying allele frequency differences between apple and hawthorn flies. Is linkage disequilibrium common throughout the genome of these flies or is disequilibrium confined only to those specific regions diverging between the host races and sibling species? Are inversion polymorphisms more prevalent in those regions of the genome displaying linkage disequilibrium? Third and finally, we have to demonstrate that host associated traits, such as differential host recognition, are directly responsible for the development of reproductive isolation among higher taxa in group. In other words, we must show that host races are, in fact, incipient species which may have reached the evolutionary point of no return. An important point mentioned in this regard is whether host fidelity behaviors are constant across the distribution of a host race. If they are and barring extinction, then host races should be considered to be potential species. As a post-doctoral fellow at Princeton University and later as a faculty member at a major research University, I plan to continue work on the R. pomonella group through a series of experiments addressing the issues raised above. Field experiments will be performed to measure levels of intra- and inter-host gene flow and to identify and characterize specific phenotypes related to host recognition and host associated development that are restricting gene flow between apple and hawthorn populations. Molecular genetic studies are currently underway with Dr. Martin Kreitrnan of Princeton University to construct an extensive restriction site polymorphism linkage map for R. pomonella. The development of such a map will let us comprehensively screen the genome of these flies for genetic 206 differentiation. In addition, the linkage map will provide a large number of genetic markers evenly distributed across the genome thereby making it possible to resolve potentially polygenic traits related to host preference and development, into discrete and mappable Mendelian factors. The feasibility and power of this strategy has recently been demonstrated by Paterson et al. (1988) working on the domestic tomato, Lycopersicon esculentum. Dr. Eric Lander of the Whitehead Institute and Harvard University, a co-researcher on the tomato project, has agreed to lend his expertise and computer programs in a collaborative effort with Dr. Kreitman and myself to accomplish similar phenotypic mapping experiments for Rhagoletis. What makes the R. pomonella group particularly amenable to genetic studies of speciation is that several pairs of sibling species in the complex, although genetically distinct in nature, can be hybridized in the laboratory to produce viable and fertile F1 progeny which can be backcrossed to either parental type. It will therefore be possible to determine whether genetic changes affecting phenotypes responsible for host shifts also form the underlying basis for reproductive isolation among higher taxa in the group. 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