THE FORAGING HABITS OF BOTTLENOSE DOLPHINS: INSIGHTS INTO TEMPORAL, DEMOGRAPHIC, AND INDIVIDUAL VARIATION By Samuel Rossman A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of Zoology–Doctor of Philosophy Ecology, Evolutionary Biology and Behavior–Dual Major 2014 ABSTRACT THE FORAGING HABITS OF BOTTLENOSE DOLPHINS: INSIGHTS INTO TEMPORAL, DEMOGRAPHIC, AND INDIVIDUAL VARIATION By Samuel Rossman Bottlenose dolphins (Tursiops truncatus) are large apex carnivores that often live in close proximity to metropolitan areas. As a result, they experience disturbances such as habitat alteration, competition with humans for food resources, and anthropogenic injury and mortality. Understanding variation in foraging habits of bottlenose dolphins over time and within populations reflects how these predators use and respond to changes in habitat and prey availability. Stable isotope analysis provides powerful insight into the foraging habitat and tropic level (foraging habits) of top predators. Carbon isotope values (δ13C) differentiate between seagrass (c.a. 12‰) and nonseagrass (phytoplankton and mangrove, < -15 ‰) based food webs in coastal estuaries and nitrogen isotope values (δ15N) increase with trophic level. I evaluated temporal, demographic and individual variation in the foraging habits of bottlenose dolphins resident to Sarasota Bay, Florida, using stable isotope analysis. Chapter one examines bottlenose dolphin response to a series of disturbances. From 1991 to 2010, bottlenose dolphin showed a significant decrease in δ 13C values and a significant increase in δ15N values, trends likely related to changes in habitat use after a 1995 commercial net fishing ban. Across a larger time period, bottlenose dolphin δ15N values significantly increased from 1944 to 1990, then data became variable. This is likely related to an initial increase and subsequent decline in anthropogenic nitrogen loading to Sarasota Bay which contributes 15N enriched nitrogen to the system. These data suggest that environmental legislation is effective in remediating anthropogenic nutrient excess in food webs. The second chapter examines the foraging habits of three demographic groups: male, female and juvenile bottlenose dolphins. Isotope values of common bottlenose dolphin prey fish were used to inform a Bayesian mass-balance model to estimate the abundance of certain groups to the diet of males, females, and juveniles. Low trophic level, seagrass associated prey are important for all demographic groups. Bayesian standard ellipses identified the degree of variability in foraging habits. The ellipse center identifies the mean isotope value for a demographic group and the ellipse size and shape determined from a covariance matrix indicates the degree of variation in the demographic group's foraging habits. While males show relatively low variability, the female standard ellipse indicates large variability in foraging habitat and trophic level. Female bottlenose dolphin foraging habits are examined further in chapter three, which investigates individual specialization. Individual specialization results from each individual using a subset of the resources used by the population. Multiple chronological isotope samples from the same individual allow the partitioning of isotopic variation (total niche width, TNW) into a within individual component (WIC, high in generalists) and a between individual component (BIC, high in individual specialists). Isotope analysis of sequential growth layers from teeth indicate that BIC constitutes 60% of TNW for δ15N and 88% of TNW for δ13C, indicative of a large degree of individual specialization. The incidence of individual specialization likely results from processes associated with learning, social structure, and intraspecific competition. ACKNOWLEDGMENTS While my name alone appears on the author line this work would not have been possible without the numerous scientists who are my collaborators, mentors, and friends. I would like to offer a special thanks to: My adviser, Peggy Ostrom, your confidence in me as a scientist was both humbling and inspiring and without it this dissertation would not exist. Thank you. Nélio Barros, whose passion for dolphin biology and conservation planted the seeds which grew into this dissertation. While he is not here to see the fruits of his efforts I am honored that I could contribute to his legacy. Randall Wells, who has been a wonderful mentor demonstrating excellence as a scientist, leader, and conservationist. Hasand Gandhi, who was always willing to give of his time and effort and whose patience with an inexperienced graduate student knew no bounds. Dick Hill, whose mentorship taught me the power of ideas and that the merit of a scholar derives from the rigor their philosophy. Craig Sticker, who taught me that good friends make the best collaborators. Josh Haslun, Briana Hauff and Kateri Salk who reminded me science is fun. I would also like to thank the countless others who have given of their time and effort to make this work possible: Nathaniel Ostrom, Brian Mauer, Elise Zipkin, Elizabeth Berens McCabe, Aleta Hohn, Anne Wiley, Ramona Beckman, Aaron Barleycorn, Brian Balmer, Jason Allen, Jenn Yordy, Gretchen Lovewell and everyone involved in Mote Marine Lab’s Stranding Investigations Program, the volunteers of the Sarasota Dolphin Research Program. On a personal note: A special thanks to my mom and dad, Bruce and Linda Rossman, whose lack of concern for my future is the greatest vote of confidence I have ever received. And Heather whose love and support didn’t just help get me through, it gave me a reason to do it. iv A note on authorship: I have had the fortunate pleasure to collaborate and publish with a large network of scientists. The first chapter of my dissertation is published in Marine Mammal Science with coauthors: Nélio B. Barros, Peggy H. Ostrom, Craig A. Stricker, Aleta A. Hohn, Hasand Gandhi, and Randall S. Wells. Chapter two is also published in Marine Mammal Science with coauthors: Elizabeth Berens McCabe, Nélio B. Barros, Hasand Gandhi, Peggy H. Ostrom, Craig A. Stricker, and Randall S. Wells. When chapter three is submitted for publication coauthors will be Megan Stolen, Nélio B. Barros, Hasand Gandhi, Peggy H. Ostrom, Craig A. Stricker, and Randall S. Wells. v TABLE OF CONTENTS LIST OF TABLES…………………………………...…………………………………………viii LIST OF FIGURES……………………………………………………………………………..ix CHAPTER 1 RETROSPECTIVE ANALYSIS OF BOTTLENOSE DOLPHIN FORAGING: A LEGACY OF ANTHROPOGENIC ECOSYSTEM DISTURBANCE…………………………………...1 ABSTRACT………………………………………………………………………………1 INTRODUCTION………………………………………………………………………..2 METHODS……………………………………………………………………………….5 Sample Site and Acquisition…………………………………………………...5 Sample Preparation……………………………………………………………..8 Statistical Analysis………………………………………………………………9 RESULTS………………………………………………………………………………10 DISCUSSION…………………………………………………………………………..15 LITERATURE CITED………………………………………………………………….21 CHAPTER 2 FORAGING HABITS IN A GENERALIST PREDATOR: SEX AND AGE INFLUENCE HABITAT SELECTION AND RESOURCE USE AMONG BOTTLENOSE DOLPHINS……………………………………………………………………………………..26 ABSTRACT…………………………………………………………………………….26 INTRODUCTION………………………………………………………………………27 METHODS……………………………………………………………………………...30 Sample Site and Acquisition………………………………………………….30 Sample Preparation……………………………………………………………31 Statistical Analysis……………………………………………………………..31 RESULTS………………………………………………………………………………34 DISCUSSION…………………………………………………………………………..40 LITERATURE CITED………………………………………………………………….47 CHAPTER 3 INDIVIDUAL SPECIALIZATION IN THE FORAGING HABITS OF FEMALE BOTTLENOSE DOLPHINS LIVING IN A TROPHICALLY DIVERSE AND HABITAT RICH ESTUARY……………………………………………………………………………….52 ABSTRACT..…………………………………………………………………………...52 INTRODUCTION……………………………………………………………………....53 METHODS……………………………………………………………………………...57 Sample Site and Acquisition………………………………………………….57 Sample Preparation……………………………………………………………57 Statistical Analysis…………………………………………………………..…58 RESULTS………………………………………………………………………………62 vi DISCUSSION…………………………………………………………………………..70 LITERATURE CITED………………………………………………………………….77 vii LIST OF TABLES Table 1. Bottlenose dolphin prey species δ13C and δ15N values (means ± standard deviation), the number of samples used to determine the average isotope value (n) dietary indicators, SCA and DNA and prey cluster designation. SCA and DNA are the fractional contribution of each species to the diet of bottlenose dolphins as determined by stomach content analysis or molecular prey detection (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). Prey cluster refers to the cluster designation as determined by K means cluster analysis. Asterisk indicates instances where Dunshea et al. 2013 report genus sp., the genus and species are provided here……………………………………………………………………………………………...35 Table 2. ANOVA results for competing models where δ15N and δ13C values are a function of individual and/or age class. Deviance information criterion (DIC) values are used for model selection. The lowest DIC value identifies the model with the highest predictive capacity. The R2 value indicates the amount of variation in the dependent variable explained by the model. Our Bayesian treatment of the data provides a 95% CI for the R2 denoted by a lower bound (CI: 2.5%) and an upper bound (CI: 97.5%)…….63 viii LIST OF FIGURES Figure 1. Distribution of habitats used by bottlenose dolphins resident to Sarasota Bay, Florida…………………………………………………………………………………………….7 Figure 2. δ13C, δ34S, and δ15N values of bottlenose dolphins and percentage of observed feedings in seagrass habitat. Percentage of observed feedings in seagrass habitat are from Barros and Wells (1998). Lines indicate the best-fit trend between percent of feedings observed in seagrass and isotope values…………………………...11 Figure 3. δ13C, δ34S, and δ15N values of muscle from 1991-2010. Open symbols indicate calves <2.5 yr of age while closed symbols are individuals >2.5 yr old. Lines indicate the best-fit trend between year and isotope values………………………………13 Figure 4. δ13C values of collagen isolated from the crown tip dating from 1944 to 2007. Closed circles represent the time period of increasing nutrient loading (1944–1989) and the open circles represent the time period of nutrient loading mitigation (1990– 2007)…………………………………………………………………………………………….14 Figure 5. δ15N values of collagen isolated from the crown tip dating from 1944 to 2007. Closed circles represent the time period of increasing nutrient loading (1944–1989), the open circles represent the time period of nutrient loading mitigation (1990–2007) and triangles show the human population size of Sarasota and Manatee Counties summed……………………………………………………………………………………….14 Figure 6. δ13C and δ15N values of prey clusters and bottlenose dolphin skin from different demographic groups including males (>6 yr old), females (>6 yr old) and juveniles (2 to 6 yr old). Prey clusters show mean with error bars depicting the standard deviation. Prey clusters were adjusted for trophic enrichment (cluster average + TEF). TEF estimates derive from this study (δ13C: 0.0‰, δ15N: 2.0‰), not the literature…38 Figure 7. SIAR results for bottlenose dolphin demographic groups: juveniles (J; 2-6 yr old males and females), females, (F; >6 yr old) and males (M; >6 yr old). Horizontal lines within boxes represent mean dietary contributions of each prey cluster to the demographic group. Boxes enclose the 50% credible interval and vertical lines with end caps depicting the 95% credible interval. Cluster 1, contains snook, ladyfish, and spot. Cluster 2 contains seatrout and crevalle jack. Cluster 3 contains toadfish, seagrass pinfish, pigfish, red drum, lane snapper, sheepshead, mojarra, and striped mullet. Cluster 4 contains nonseagrass prey fish, threadfin herring, nonseagrass pinfish, and scaled sardine.…………………………………………………………………………………39 ix Figure 8. Carbon and nitrogen isotope values of prey clusters and standard ellipses controlled for small sample size (SEAc) for female, male and juvenile bottlenose dolphins. The upper right inset table provides SEAc area (‰2), mean Bayesian standard ellipse area (SEAb) (‰2), and the lower (2.5%) and upper (97.5%) bounds for the 95% credible interval around the mean SEAb for males (M; >6 yr old), females (F; >6 yr old), and juveniles (J; 2 to 6 yr old)………………………………………………………………..40 Figure 9. The frequency of an isotope value over the lifetime of three individuals is depicted by red, blue and yellow curves in panels A and B. Arrows at the bottom of the curves reflect the degree of variation in isotope value over the lifetime of an individual also termed the within individual component (WIC) of the population’s isotope variation. Arrows between curves reflect the between individual component (BIC) of the isotopic variation in the population. A) Isotope frequency curves for individual specialists, each with a narrow range in isotope values. In this case BIC is larger than WIC. B) Isotope frequency curves for individual generalists, each with a wide range in isotope values. In this case BIC is much smaller than WIC. C) Microdrilled tracks (green lines) imposed over a photograph of a bucco-lingual longitudinal section of a dolphin tooth. The table shows age class for each track and hypothetical δ13C data for two individuals. D) Histograms for the hypothetical isotope data in panel C. The large BIC compared to WIC indicates that these dolphins are individual specialists……………………………...55 Figure 10. δ15N values from bottlenose dolphin teeth for five age classes covering the lifetime of the individual. Age class >15 is adult. Age classes were determined from bottlenose dolphin tooth ontogeny. Individuals are differentiated by color and Sarasota Dolphin Research Program identification codes given in the figure legend. The inset shows average δ15N values for each age class (closed triangles) and associated credible intervals (bars) from Bayesian ANOVA……………………………………………64 Figure 11. δ13C values from bottlenose dolphin teeth for five age classes covering the lifetime of the individual. Age class >15 is adult. Age classes were determined from bottlenose dolphin tooth ontogeny. Individuals are differentiated by color and Sarasota Dolphin Research Program identification codes given in the figure legend……………65 Figure 12. An individual’s isotope value as and adult plotted against its isotope value as a calf, A) carbon isotope values and B) nitrogen isotope values. Calf δ13C or δ15N value is the average of age classes 1-2 yr and 2-4 yr and adult isotope values is age class > 15 yr. Individuals are differentiated by color (same color scheme as earlier figures) and Sarasota Dolphin Research Program identification codes given in the figure legend. Regression equations are shown in the bottom right of each panel. For δ 15N the 95% credible interval for the slope was 0.38-1.06 and for the intercept it was -0.56-4.44. For δ13C the 95% credible interval for the slope was 0.72-1.14 and for the intercept it was 0.86-1.34. The 95% credible intervals for the slopes are depicted on the graphs as grey dashed lines. R2 values and their 95% confidence intervals are shown in the lower right of each graph. The R2 value documents the proportion of the variance in adult isotope values that can be explained by calf isotope values……………………………………….66 x Figure 13. Isotope standard ellipses representing variation in δ13C and δ15N values for each individual over their lifetime. Mean δ13C and δ15N values for each individual define the center of the standard ellipse and the shape and orientation are determined by a covariance matrix. Individuals appear in three non-overlapping groups. Compared to the population mean (-10.5‰ and11.1‰ for δ13C and δ15N respectively) group one is defined by high δ15N values and low δ13C values, group two has low δ15N values and high δ13C values, and group three possess low δ15N values and intermediate δ13C values. Individuals are differentiated by color using the same scheme as in earlier figures. Sarasota Dolphin Research Program identification codes given in the figure legend…………………………………………………………………………………………...68 Figure 14. Maps of Sarasota Bay depicting habitat distribution (left) and observational standard ellipses generated from the latitude and longitude data from sightings (right). Data for habitat use was obtained from the Southwest Florida Water Management District (2010). Inset depicts location of Sarasota Bay in relation to the state of Florida. Colors represent different habitats in Sarasota Bay as defined in the figure legend. Individuals in the observational standard ellipse maps are differentiated by color (same color scheme as earlier figures) and Sarasota Dolphin Research Program identification codes given in the figure legend…………………………………………………………….69 xi CHAPTER 1 RETROSPECTIVE ANALYSIS OF BOTTLENOSE DOLPHIN FORAGING: A LEGACY OF ANTHROPOGENIC ECOSYSTEM DISTURBANCE ABSTRACT We used stable isotope analysis to investigate the foraging ecology of coastal bottlenose dolphins (Tursiops truncatus) in relation to a series of anthropogenic disturbances. We first demonstrated that stable isotopes are a faithful indicator of habitat use by comparing muscle isotope values to behavioral foraging data from the same individuals. δ13C values increased, while δ34S and δ15N values decreased, with the percentage of feeding observations in seagrass habitat. We then utilized stable isotope values of muscle to assess temporal variation in foraging habitat from 1991 to 2010 and collagen from tooth crown tips to assess the time period 1944 to 2007. From 1991 to 2010 δ13C values of muscle decreased while δ34S values increased, indicating reduced utilization of seagrass habitat. From 1944 to 1989 δ13C values of the crown tip declined significantly, likely due to a reduction in the coverage of seagrass habitat, and δ15N values significantly increased, a trend we attribute to nutrient loading from a rapidly increasing human population. Our results demonstrate the utility of using marine mammal foraging habits to retrospectively assess the extent to which anthropogenic disturbance impacts coastal food webs. 1 INTRODUCTION Coastal marine ecosystems can be impacted by a multitude of anthropogenic disturbances including pollution, habitat alteration, overfishing, and climate disruption. Ecosystem change is often difficult to document because disturbances occur across multiple temporal scales and the vast majority of ecological studies span only a few years (Knowlton and Jackson 2008). Because of their high trophic position within the food web and their typically long lifespan, large marine predators integrate disturbance across multiple trophic levels and are of particular interest as sentinels of ecosystem change (Sergio et al. 2008). However, collection of consistent, continuous data over large spatial scales is expensive, requires extensive effort, and is generally only available from data associated with commercial fishing. While fisheries catch data have documented profound global declines in predatory fish populations (Myers and Worm 2003), causal mechanisms are difficult to assess. Declining fish stocks are often attributed to intense fishing pressure, but other factors contribute to the diversity and abundance of marine organisms. For example, changes in foraging ecology (trophic level, foraging location) have been implicated as important regulators of population size and distribution of marine organisms (Emslie and Patterson 2007, Österblom et al. 2008). Because top predators rely on energy transfers from each trophic step, they are sensitive to perturbations at any point in the food web. Thus, changes in population size, distribution, or foraging ecology of top predators are indicators of ecosystem change. 2 The study of marine predator foraging ecology traditionally involves stomach content analysis or direct observation of feeding behavior (Barros and Wells 1998). Stomach content analysis usually requires deceased animals and stomachs are often empty and may be influenced by differential digestion and/or cause of death. Direct observation of prey consumption is informative for predators who capture or consume prey at or near the water’s surface but can be time consuming, expensive and may be biased toward prey living in shallow water or high in the water column. Stable isotope analysis of selected tissues from predators is a relatively inexpensive alternative to traditional diet analysis and has a long-standing history in food web studies (Peterson and Fry 1987). Carbon isotope values (δ13C) are valuable because they differ among forms of primary production and are passed up the food web to consumers. Thus, they distinguish organisms from habitats with isotopically unique primary producers (Peterson and Fry 1987). Similar to carbon, sulfur isotope values (δ34S) distinguish consumers who derive nutrition from rooted marine plants vs. phytoplankton (Connolly et al. 2004). Nitrogen isotopes (δ15N) have been extensively used in food web studies because of the strong positive correlation with trophic level (Peterson and Fry 1987, Harrigan et al. 1989, Gould et al. 1997). Isotope analysis of different tissues aids in the assessment of foraging over different time scales or through life history milestones because animal tissues turn over at varying rates. Blood plasma records foraging over a period of days (Hobson 1999) and muscle integrates over many months for large mammals (Sponheimer et al. 2006). Protein from tooth dentin remains metabolically inert once formed and, thus, records foraging at the time of synthesis (Knoff et al. 2008). The teeth of marine mammals, such 3 as bottlenose dolphins (Tursiops truncatus) have annual growth layers (Hohn et al. 1989) in which collagen can be examined to assess isotopic variation of an individual over its lifetime (Mendes et al. 2006, Newsome et al. 2009). The isotope value of collagen in well-preserved tooth and bone can provide a historical record of foraging (Hobson and Sease 1998). Using bone collagen samples from North Sea harbor porpoises (Phocoena phocoena), Christensen and Richardson (2008) attributed a decrease in δ 15N to the declining availability of high trophic level prey from 1848 to present. In a study of dentin from mid-Atlantic bottlenose dolphin teeth, Walker et al. (1999) found no significant increase in δ15N from the 1880’s to the 1980’s suggesting little to no change in dolphin diet over this time period. Unfortunately, information on parameters such as life history, geographic range, migration, sex, and age are often limited for historical samples or those from stranded animals of unknown geographic origin; however, any one of these factors may confound the ability to attribute changes in foraging to disturbance. Data on any subset of these parameters may offer the possibility to partition variance in isotope values and control for factors unrelated to ecological disturbance. Bottlenose dolphins from Sarasota Bay (SB), Florida, have a well established, long-term, residency within SB (Wells et al. 1987, Wells 2003) and thus provide an ideal study population for probing long-term effects of anthropogenic disturbance on foraging ecology. In addition, the Sarasota Dolphin Research Program has collected data on vital rates and a number of other parameters for a multi-generational resident community of ca. 160 dolphins since 1970 (Wells 2009, Bowen et al. 2010). These dolphins have experienced numerous anthropogenic disturbances likely to influence various aspects of 4 their ecology. For example, since about 1950 Sarasota Bay has undergone large-scale changes through coastal construction that altered seagrass coverage. Furthermore, the human population surrounding the bay has tripled since 1970 with associated changes in commercial and recreational fishing pressure, and nutrient inputs (Sarasota Bay National Estuary Program 2010, U.S. Census Bureau 2010). As predators that consume a wide variety of prey items across numerous estuarine and coastal marine habitats (Barros and Wells 1998), bottlenose dolphins are likely influenced by ecosystem disturbance. The purpose of this study was to examine the role of anthropogenic disturbance on the foraging ecology of bottlenose dolphins resident to SB. We first explore the relationship between isotope values and observational foraging data (percentage of feedings in seagrass habitat). We then examined muscle tissue from dolphins stranded between 1991 and 2010 to assess changes in foraging ecology (habitat and trophic level) during a period including the implementation of a 1995 state-wide commercial net fishing ban. To extend our retrospective analysis of foraging ecology to six decades (1944-2007), we examined the isotope values of dentin from the crown tip (external 2-3 mm of the crown) of teeth collected from known SB stranded or live dolphins sampled during health assessments (Hohn et al. 1989). METHODS Sample Site and Acquisition SB is a complex of shallow bays (< 4m deep, 40 km long) on Florida’s central west coast, communicating with the Gulf of Mexico through narrow deep passes separating a 5 series of narrow barrier islands. The study area encompasses a diverse array of habitats including seagrass meadows, mangroves, shorelines and open bay (Fig. 1). All samples were obtained from a long-term resident community of ca. 160 bottlenose dolphins. As part of the Sarasota Dolphin Research Program, most dolphins from SB are identifiable and of known age and sex (Wells 2003, 2009). Some of the dolphins included in this study were also reported on in Barros and Wells (1998). Thus, we were able to compare isotope values from this study to the percentage of observed feedings in seagrass habitat, documented in Barros and Wells (1998), for the same individuals. Observational data on seagrass foraging and isotope values of muscle tissue are reported for six individuals, identified by freeze brand number (FB): FB19, FB21, FB31, FB41, FB57, FB98. Four of the individuals used for observation-isotope comparison died in 1991, the other two stranded in 1994 and 1996. Thus, all but one individual died prior to the net ban. 6 Figure 1. Distribution of habitats used by bottlenose dolphins resident to Sarasota Bay, Florida. Samples of muscle tissue from SB individuals were obtained from stranded, deceased dolphins (n = 41) recovered and sampled by Mote Marine Laboratory’s Stranding Investigations Program during 1991 - 2010. Tooth samples were obtained from live animals under local anesthesia during brief capture-release health assessments (n = 27) (Hohn et al. 1989) or from stranded, deceased dolphins (19842009) (n = 40, total for crown tip data set n = 67). 7 Sample Preparation Muscle tissue was freeze-dried, lipid extracted, and homogenized to a fine powder in a ball and capsule amalgamator (Crescent Industries). Aliquots (1 mg) were transferred to tin capsules for stable carbon and nitrogen isotope analysis. Stable sulfur isotopes were analyzed separately by weighing 6 mg of sample into tin capsules amended with 2 mg of vanadium pentoxide. The external 2-3 mm of the crown of the tooth (crown tip) was used for isotope analysis. This material is formed prior to one year of age during gestation and early development and is therefore an indicator of maternal diet. Ages used in this study were obtained from dolphins of known age via observation or quantification of growth layer groups (GLG) in teeth (Hohn et al. 1989). The crown was separated using a Dremel tool and demineralized in HCl (1N) for 72 hours leaving behind a collagenous replica of the tooth. The replica was then dried, and lipid extracted. We were able to extract the oldest material, the crown tip, by sectioning 2-3 mm of collagen from the apex of the crown. Collagen samples (1 mg) were transferred to tin cups for δ13C and δ15N analysis. Insufficient mass precluded sulfur isotope analysis. Aliquots of muscle and tooth collagen were analyzed for stable carbon and nitrogen isotopic composition using an elemental analyzer (Eurovector) interfaced to an Isoprime mass spectrometer (Elementar). Samples were analyzed for sulfur isotopic composition using an elemental analyzer (Costech Analytical) interfaced to a mass spectrometer (Thermo-Finnegan DeltaPlus XP). Isotope values are expressed as: 8 δX = {(Rsample / Rstandard ) – 1} x 1,000 Where X represents 13C, 34S, or 15N and R represents the abundance ratios: 34S/32S, 13C/12C, or 15N/14N respectively. In-house standards used for δ13C and δ15N were calibrated with respect to international standards VPDB and air, respectively. NBS127 (21.1‰) and IAEA-SO-6 (−34.05‰) were used to normalize δ34S data to V-CDT. Inhouse standard precision is +/- 0.2‰ for δ13C, δ34S and δ15N values. Statistical Analysis All data were approximately normal and homoscedastic. To test the relationship between isotope values of muscle (δ13C, δ34S or δ15N) and the percentage of observed feedings in seagrass, we used a linear regression model and a random bivariate resampling for 1,000 permutations. For muscle tissue samples collected from 1991 to 2010 we used a general linear model (GLM) with δ13C, δ34S and δ15N as dependent variables and age, sex, weaning status, season and year as independent variables. While most calves are nutritionally weaned at 18 to 20 months (Perrin and Reilly 1984), calves with ages up to 2.5 years were grouped as pre-weaned to minimize the contribution of a maternal isotope signal. Thus the variable “weaning/sex” consists of dolphins divided into classes of male (n = 9), female (n = 25) or pre-weaned calf (n = 8). For the variable “season”, dolphin isotope data were grouped by seasons based on the calendar date of stranding: spring (21 April-6 June, n = 8), summer (21 June-20 September, n = 24), fall (21 September-20 December, n = 3) and winter (21 December21 April, n =6). Categorical variables (sex/weaning or season) with a significant effect 9 on isotope value were further examined for differences between groups with Tukey's post-hoc pair wise comparisons. For teeth collected from live animals, the date of birth was back-calculated from the age at date of collection. Isotope values from the crown tip reflect the diet of bottlenose dolphins prior to age one. We used an analysis of covariance (ANCOVA) in which δ13C and δ15N values were modeled with a continuous variable, “year,” and a categorical variable, nutrient loading, separating two time periods that markedly differed with regard to nutrient loading (prior to and after 1989) (Tomasko et al. 2005). Carbon isotope values from the crown tip were corrected 0.2‰ per decade to account for changes in the δ13C of atmospheric CO2 due to the burning of fossil fuels (Suess effect) (Quay et al. 2003). There should be no influence of sex or age on crown tip isotope values as the crown tip is formed prior to one year of age and exclusively influenced by maternal foraging ecology. Statistical tests were conducted in R 2.14 (R Foundation for Statistical Computing 2011). RESULTS Carbon isotope values of muscle indicated a significant positive regression with percentage of observed foraging in seagrass habitat (Fig. 2A; n = 6, regression with bivariate resampling, r2 = 0.807, P < 0.001); δ15N and δ34S values were inversely related to observed foraging in seagrass habitat (Fig. 2B, 2C, n = 6, regression with bivariate resampling, δ34S: r2=0.836, δ15N: r2 = 0.952, δ34S and δ15N: P < 0.001). 10 Figure 2. δ13C, δ34S, and δ15N values of bottlenose dolphins and percentage of observed feedings in seagrass habitat. Percentage of observed feedings in seagrass habitat are from Barros and Wells (1998). Lines indicate the best-fit trend between percent of feedings observed in seagrass and isotope values. 11 For muscle samples collected from strandings (1991 to 2010), the results of the GLM model explained a significant portion of the variance for carbon and nitrogen isotope values but not sulfur (δ13C : n = 41, F5, 35 = 4.17, P = 0.004, δ34S: n=39, F5, 33 = 1.81, P = 0.1383, δ15N: n = 41 F5, 35 = 6.24, P < 0.001,). Age was not a significant factor for any of the three isotope values (δ13C: t35 = 1.14, P = 0.29, δ34S: t33 = 1.12, P = 0.23, δ15N: t35 = 1.08, P = 0.29). Weaning/sex was a significant determinant of δ13C (F2, 38 = 6.85, P = 0.002) and δ15N (F2, 38 = 15.05, P < 0.001) but not δ34S (F2, 36 = 0.62, P = 0.544). Pre-weaned calves had higher δ13C values compared to males but did not significantly differ from females (pre-weaned vs. males, t35 = 2.33, P = 0.026, preweaned vs. females t35 = 1.71, P = 0.095). Pre-weaned calves had significantly higher nitrogen isotope values compared to both males and females (pre-weaned vs. males, t35 = 2.61, P = 0.013, pre-weaned vs. females, t35 = 4.04, P < 0.001). Males and females were not significantly different for carbon or nitrogen isotope values (δ13C: t35 = 0.78, P = 0.710, δ15N: t35 = 1.48, P = 0.310). Season was not significant for any of the three isotopes (δ13C: F3, 37 = 0.73, P = 0.543, δ34S: F3, 35 = 1.12, P = 0.353, δ15N: F3, 37 = 0.03, P = 0.993). Carbon isotope values significantly decreased as a function of year, while sulfur isotope values significantly increased with year (δ13C: Fig. 3A, t35 = 2.32, P = 0.026, δ34S: Fig. 3B, t33 = 2.63, P = 0.013). Nitrogen isotope values showed no significant trend with year (Fig. 3C, t35 = 0.50, P = 0.62). 12 Figure 3. δ13C, δ34S, and δ15N values of muscle from 1991-2010. Open symbols indicate calves <2.5 yr of age while closed symbols are individuals >2.5 yr old. Lines indicate the best-fit trend between year and isotope values. 13 Figure 4. δ13C values of collagen isolated from the crown tip dating from 1944 to 2007. Closed circles represent the time period of increasing nutrient loading (1944–1989) and the open circles represent the time period of nutrient loading mitigation (1990–2007). Figure 5. δ15N values of collagen isolated from the crown tip dating from 1944 to 2007. Closed circles represent the time period of increasing nutrient loading (1944–1989), the open circles represent the time period of nutrient loading mitigation (1990–2007) and triangles show the human population size of Sarasota and Manatee Counties summed. 14 For data from the tooth crown tip spanning the time period 1944-2007 an ANCOVA for both δ13C and δ15N explained a significant portion of the variance (δ13C : Fig. 4, n = 67, F2, 64 = 4.97, P = 0.001, δ15N: Fig. 5, n = 67, F2, 64 = 10.68, P < 0.001). For carbon and nitrogen isotope values both year and nutrient loading had a significant effect in the ANCOVA model (δ13C: Fig. 4, year: t64 = 3.05, P = 0.003, nutrient loading: t64 = 2.72, P = 0.008, δ15N: Fig. 5, year: t64 = 4.38, P < 0.001, nutrient loading: t64 = 2.04, P = 0.045). DISCUSSION Our multi-decadal study of bottlenose dolphin foraging ecology documents large temporal variation in the δ13C, δ15N and δ34S values of individuals resident to SB. Because our study population emphasizes use of inshore bay, sound, and estuary habitats over the open waters of the Gulf of Mexico (Wells et al. 1987, Wells 2003), isotopic differences derive primarily from variation in foraging habits within SB. Isotopic variation is useful because it can provide insight into the ecology of organisms and historical changes in environmental conditions (Newsome et al. 2010) particularly in near-shore environments. Carbon isotope values have long been used to distinguish seagrass from non-seagrass based food webs (Peterson and Fry 1987, Harrigan et al. 1989). Similarly, δ34S values of consumers frequenting nearshore seagrass habitats are unique compared to those utilizing non-seagrass habitat (Barros et al. 2010). This is because sulfur isotopes distinguish rooted and non-rooted phototrophs and these differences are passed up the food web. The uniquely low δ 34S values of rooted plants, such as seagrass, derive from the incorporation of 15 34S-depleted sulfides, common in reducing sediments (Brunner and Bernasconi 2005, Connolly et al. 2004, Oakes and Connolly 2004). However, we cannot rule out the possibility that low δ34S values are influenced by the transfer of sulfur from the terrestrial environment (δ34S value approximately 0‰) into estuaries where it is taken up by benthic plants and incorporated into the food web (Trust and Fry 1992). Regardless, individuals with low sulfur isotope and high 13C values likely derive proportionally more nutrition from seagrass-based food webs than open water areas within SB (Bottcher et al. 2006). While δ13C and δ34S values are established indicators of habitat use, few studies of wild populations have compared the isotope value of highly mobile organisms to their habitat of origin. This requires an isotope study that is coordinated with tagging or observational efforts, both of which can be quite expensive and labor intensive. Thus, we took the unique opportunity to compare our isotope values to previously reported observational data for six individuals. δ13C values are positively correlated with percent observations in seagrass and δ34S are negatively correlated with the observational data suggesting a close association between observational data on habitat use and stable isotopes. Thus, it appears that dolphins frequenting seagrass habitat also derived their carbon and sulfur from seagrass based food webs. Like δ13C and δ34S, δ15N values also vary as a function of percent observations foraging in seagrass habitat. δ15N values significantly decrease as the percentage of observed feeding in seagrass increases (Fig. 2). This may result from variation in the isotope composition of nutrients supplied to the base of the food web (Dillon and Chanton 2008, Graham et al. 2010). Alternatively, prey trophic level and availability vary by habitat and may also be important controls on δ15N values. For example, pinfish are 16 a dominant dietary item of SB dolphins, are frequently associated with seagrass, and often derive a large portion of their diet from seagrass (Luczkovich and Stellwag 1993, Barros and Wells 1998). Thus, bottlenose dolphins utilizing seagrass habitats would likely forage at a low trophic level. In contrast, low trophic level fish that are abundant in open water habitats (e.g., clupeids) are not common dietary items of bottlenose dolphins (Barros and Wells 1998, Berens McCabe et al. 2010, Gannon et al. 2009). Thus, there may be a tendency for dolphins from non-seagrass habitats to feed at higher trophic levels than those that forage in seagrass, consistent with the observed trend in δ15N. Muscle isotope data provide foraging information from 1991 to 2010. Among the variables we tested only weaning status and year had a significant influence on δ13C and δ34S values. Calves less than 2.5 years old had significantly higher δ13C values than older individuals. High δ13C values are likely the result of both trophic enrichment and the use of seagrass habitats as a nursery ground for Sarasota Bay dolphins (Wells 1991, 1993). In addition to weaning and year, several other factors (e.g., predator distribution or boat traffic) could influence foraging ecology and contribute to the large variation we observed in our data. Our observational data suggest that SB dolphins demonstrate some degree of individual foraging specialization that may also contribute to the wide range of isotope values observed for muscle data from 1991 to 2010. Despite this, the significant influence of year on δ13C and δ34S values suggests that the use of non-seagrass habitats by bottlenose dolphins in Sarasota Bay increased from 1991 to 2010 consistent with observations of increased use of open bay habitat by SB dolphins in recent years (Wells 2003). A state-wide net fishing ban may have been a 17 salient factor contributing to this trend. Prior to 1995 dolphins were likely in competition with the fishery for some prey species. As a consequence, prior to 1995 dolphins may have been forced to consume species of no commercial value that derive their carbon primarily from inshore seagrass habitats (i.e., pinfish) (Berens McCabe et al. 2010). However, decreased abundance of predator sharks and increased boat traffic in shallow water may also contribute to the trend in δ13C (Wells 2003). δ15N values showed no significant change between 1991 and 2010.This suggests that factors other than habitat use are impacting δ15N values, a possibility that can be explored further with our longterm tooth crown tip data set. Analyses from tooth crown tips enable us to examine temporal records of bottlenose dolphin foraging ecology from 1944 to 2007, as teeth have been collected from known resident dolphins born as early as 1944. Even after the Suess correction, δ13C values significantly declined from 1944 to 1989; a trend that would be falsely inflated if the data had not been corrected. The temporal decrease in δ 13C values likely results from a 25% decrease in SB seagrass cover from 1950 to 1989 (Tomasko et al. 2005). In contrast to δ13C values, δ15N values of crown tips increase from 1944 to 1989. This trend likely reflects an increase in wastewater loading to Sarasota Bay (Tomasko et al. 2005). The 15N-enriched nutrients typical of wastewater are taken up by phototrophs, are passed to consumers, and result in elevated δ15N values throughout the food web (Macko and Ostrom 1994, Cole et al. 2005, Schlacher et al. 2005). The increase in δ15N values from 1944 to 1989 is proportional to the increase in the human population size of Sarasota and Manatee Counties combined, the two counties 18 encompassing Sarasota Bay (Fig. 5) (U.S. Census Bureau 2010). After 1989, total nitrogen loading was dramatically reduced due to advances in the treatment of wastewater. In 1988 the total nitrogen entering SB was estimated at 905,386 kg compared to 488,981 kg in 1990 and a baseline of 191,419 kg in 1890 (Tomasko et al. 2005). The absence of a temporal trend in δ15N values after 1989 likely reflects a response of the ecosystem to reduced influence of 15N-enriched wastewater. Like the post-1989 tooth data, δ15N values of muscle tissue show no relationship with time from 1991 to 2010. The observation that only carbon and sulfur isotope data suggest an increased use of non-seagrass foraging habitats during this period is enigmatic in that all three isotopes correlate with the percentage of observed foraging in seagrass habitat (Fig. 2). The influence of habitat use on δ15N values may be confounded by other variables. For example, the expected increases in δ15N values of dolphins resulting from a higher propensity to forage in open water habitat may be obscured by a decrease in nutrient loading and associated with a decline in the contribution of 15N enriched nutrients to the food web. In addition to the effects of nutrient loading on nitrogen isotope data, δ13C values of primary producers may be impacted. For example, phytoplankton blooms stimulated by nutrient loadings can reduce dissolved CO2 concentrations and increase δ13C of phototrophs (Popp et al. 1998). However, δ13C values declined from 1944 to 1989. Thus, we propose an alternative explanation that addresses the temporal trends in all three isotopes in the context of historical changes to SB. For much of the last half century, SB experienced a slow, steady decline in health that is strongly related to nitrogen pollution. Nitrogen loadings in 1989 were 4.7 19 times higher than they were in 1890, a phenomenon linked to increased inputs from wastewater, storm water, and groundwater (e.g., from septic systems) as human population and development increased (Tomsko et al. 2005). The excess nitrogen stimulated algal growth which, in turn, reduced light penetration and caused widespread declines in seagrass across the bay through ca. 1989 (loss of 25% of total seagrass coverage1950-1988) (Tomasko et al. 2005). The recovery of seagrass after 1989 is, in part, a response to the Grizzle-Figg legislation of August 1988 passed by the Florida state legislature (Section 403.086, Florida Statutes). This legislation placed limits on the amount of nitrogen in wastewater discharge and promoted wastewater recovery efforts. From 1988 to 1990 nitrogen loads into SB decreased 46% (Tomasko et al. 2005). Since then improvements in water treatment technology resulted in further reduction of nitrogen loading bay-wide. Today SB receives a nitrogen load equivalent to only 5% of the 1988 value (Sarasota Bay National Estuary Program 2010). Since 1988, an improvement in water clarity has been accompanied by a 24% increase in seagrass acreage compared to 1950 values (Sarasota Bay National Estuary Program 2010). The undulation in nitrogen loadings and associated seagrass coverage are recorded in the carbon, sulfur, and nitrogen isotope data preserved within various dolphin tissues. We demonstrate that changes in foraging patterns that correlate with perturbations to the SB ecosystem have been propagated throughout the food web from the earliest time we investigated, the 1940’s. Thus, marine mammals are not only sentinels of marine ecosystem health (Wells et al. 2004, Bossart 2010) but can provide historical context for past ecological change, providing compelling data related to human disturbance. 20 LITERATURE CITED 21 LITERATURE CITED Barros, N. B., P.H. Ostrom, C. A. Stricker and R. S. Wells. 2010. 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Zoo Biology 28:1-17. 25 CHAPTER 2 FORAGING HABITS IN A GENERALIST PREDATOR: SEX AND AGE INFLUENCE HABITAT SELECTION AND RESOURCE USE AMONG BOTTLENOSE DOLPHINS ABSTRACT This study examines resource use (diet, habitat use, and trophic level) within and among demographic groups (males, females, and juveniles) of bottlenose dolphins (Tursiops truncatus). We analyzed the δ13C and δ15N values of 15 prey species constituting 84% of the species found in stomach contents. We used these data to establish a trophic enrichment factor (TEF) to inform dietary analysis using a Bayesian isotope mixing model. We document a TEF of 0‰ and 2.0‰ for δ13C and δ15N, respectively. The dietary results showed that all demographic groups relied heavily on low trophic level seagrass-associated prey. Bayesian standard ellipse areas (SEAb) were calculated to assess diversity in resource use. The SEAb of females was nearly four times larger than that of males indicating varied resource use, likely a consequence of small home ranges and habitat specialization. Juveniles possessed an intermediate SEAb, generally feeding at a lower trophic level compared to females, potentially an effect of natal philopatry and immature foraging skills. The small SEAb of males reflects a high degree of specialization on seagrass associated prey. Patterns in resource use by the demographic groups are likely linked to differences in the relative importance of social and ecological factors. 26 INTRODUCTION The use of particular food resources or habitats by members of a population impacts the intensity of intraspecific competition, social interactions, and risk of predation or parasitism (Bolnick et al. 2003). Further, a wealth of recent literature documents that ecological inequality within a population results in differential use of the total resource pool (e.g., habitat or prey type) by individuals or assemblages within that population (Bolnick et al. 2003, Newsome et al. 2009, Torres and Read, 2009). Such intraspecific variation in resource use can confer both benefit and detriment to the long-term viability of a population. For example, differential habitat use among assemblages within a population can result in increased population viability amid the loss of a specific habitat type (Tyler and Rose 1994). However, loss of a habitat upon which all or most juveniles are dependent would likely result in population decline, emphasizing the importance of studying variation in resource use among demographic groups (Dahlgren et al. 2006). The impact on certain demographic groups, and thus population viability, is of particular concern for wildlife populations in close proximity to human development because resources within these communities are more likely to experience disturbance (e.g., habitat loss, competition with humans for resources). Marine mammals are of particular interest as they are large predators that often inhabit metropolitan coastal areas where habitats have undergone degradation and increased fishing pressure. The bottlenose dolphins (Tursiops truncatus) of Sarasota Bay (SB), FL, represent a model system to study patterns in resource use within and between demographic groups. SB dolphins are year-round, multi-generational residents that have been intensively studied for nearly five decades (Wells et al. 1987; Wells 2003, 2014). 27 Previous stomach content studies of stranded deceased dolphins from the SB population (Barros and Wells 1998, Berens McCabe et al. 2010) provide estimates of diet that reflect recently ingested prey. Additionally, dolphin foraging has been assessed using molecular prey detection on fecal samples (Dunshea et al. 2013). Unlike stomach content analysis, molecular prey detection is not limited to salvaged individuals. However, the time period represented by the molecular data is similarly short. Together stomach content data and molecular prey detection are excellent indicators of the prey species commonly consumed by SB bottlenose dolphins. Yet, to date, there is no information on potential differences in resource use among demographic groups within the long-term resident community. Carbon and nitrogen stable isotope analysis of bottlenose dolphin tissues complements stomach content and molecular techniques by providing information on habitat use, trophic position, and diet over a long time period (half-life of months for skin and years for muscle) (Newsome et al. 2010). The foraging habits of a large number of individuals can be obtained because, in addition to tissues from salvaged animals, analysis can be conducted on biopsies from extant members of the population. Unique types of information can be derived from stable isotope data. Carbon isotope values (δ13C) are indicators of primary production at the base of the food web. δ 13C values differentiate seagrass from phytoplankton and nonseagrass habitat (mangrove and open bay) (Peterson and Fry 1987). For Sarasota Bay bottlenose dolphins, high δ13C values indicate frequent foraging in seagrass habitat (Rossman et al. 2013). Nitrogen isotope values (δ15N) generally increase by 3‰-4‰ with each step in the food chain, offering a good indicator of trophic level (Peterson and Fry, 1987); although, recent 28 studies indicate trophic dynamics may be lower for high trophic level organisms (Hussey et al. 2014). The information provided by stable isotope analysis is particularly valuable for cryptic foragers such as bottlenose dolphins who capture and consume prey underwater. Because of the ecological information derived from stable isotope approaches, mass-balance models using multiple isotopes are well established tools for determining the relative contribution of various prey sources to a population’s diet (Harrigan et al. 1987, Phillips et al. 2005). Recently, dietary assessments using stable isotopes have been advanced via the development of Bayesian mass balance models. By incorporating variability in prey and consumer isotope values, Bayesian diet modeling programs, such as Stable Isotope Analysis in R (SIAR) (Jackson et al. 2011) have a unique advantage over earlier mass balance models (Harrigan et al. 1989, Phillips et al. 2005). Unlike the earlier models that report the fractional contribution of prey to the diet as a range, Bayesian models provide a true probability distribution for each prey item (Parnell et al. 2010). While SIAR provides an estimate of the average contribution of each prey item to the diet, the degree of variation within a population or demographic group is also an important descriptor of foraging ecology. Stable isotope Bayesian ellipses in R (SIBER) (Jackson et al. 2011) uses δ13C and δ15N values to construct ellipses that represent two dimensional equivalents of the standard deviation. While these ellipses were originally intended to compare isotopic variability among species within a community they can also be used to quantify variability within and between demographic groups and to infer differences in habitat use and trophic diversity. 29 In this study we assess resource use (diet, habitat use, and trophic level) among male, female, and juvenile bottlenose dolphins (demographic groups). We first compare diet among the groups using stable isotope-based Bayesian dietary estimation. We then compare variation in resource use among the groups via stable isotope Bayesian standard ellipses. These tools provide important insight into a cryptic forager and the manner in which the unique ecology of the demographic groups relates to resource use at the population level. METHODS Sample Site and Acquisition SB is a complex series of shallow bays (<4m deep, 40 km long) on the central west coast of Florida, communicating with the Gulf of Mexico through narrow, deep passes separating a series of narrow barrier islands. The study area encompasses a diverse array of habitats, including seagrass meadows, mangrove fringing forests, humanaltered shorelines, and open bay (Rossman et al. 2013). Fish commonly found in the diet of bottlenose dolphins were collected for isotopic analysis during fish abundance surveys 2009-2012 (Table 1) (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). In total, 15 species and 234 individual samples were processed for isotope analysis. Sampling targeted fish between 100 and 300 mm, the size range most often found in stomach contents of bottlenose dolphins (Barros and Wells 1998). Bottlenose dolphin skin samples were obtained from a community of ca. 160 individuals, mostly of known age and sex that are resident to SB (Wells 2003, 2009). Skin samples were taken during health assessments when dolphins were briefly captured, biopsied, 30 and released (Wells et al. 2004). In the field, tissues were stored in liquid nitrogen and retained frozen prior to analysis. Isotope values for bottlenose dolphin muscle tissue used to determine the trophic enrichment factor (TEF) were taken from Rossman et al. (2013). Because muscle data derive from stranded, deceased dolphins it is independent from the skin samples used for diet estimation in SIAR. Sample Preparation White muscle tissue from fish and bottlenose dolphin skin were freeze-dried, lipid extracted, and homogenized to a fine powder in a high-energy ball mill (SPEX SamplePrep) and a 1 mg aliquot of homogenate was transferred to tin capsules for stable carbon and nitrogen isotope analysis. Isotope values were determined using an elemental analyzer (Eurovector) interfaced to an Isoprime mass spectrometer (Elementar). Isotope values are expressed as: δX = {(Rsample / Rstandard ) – 1} x 1,000 where X represents 13C or 15N, and R represents the abundance ratios: 15N/14N 13C/12C or respectively. In-house standards used for δ13C and δ15N were calibrated with respect to international scales V-PDB and air respectively. In-house precision was +/0.2‰ for δ13C and δ15N values. Statistical Analysis To delineate factors impacting prey fish isotope values, we assessed the influence of standard length, habitat, season, and location on δ13C and δ15N values of each of five prey fish species whose sample size was sufficient for general linear modelling (GLM). 31 These species included spot, Leiostomus xanthurus; spotted seatrout, Cynoscion nebulosus; pigfish, Orthopristis chrysoptera; pinfish, Lagodon rhomboides; and sheepshead, Archosargus probatocephalus. The variable habitat included three levels: seagrass, mangrove, and open bay. Tukey’s HSD was used to test for pairwise differences in mean δ13C or δ15N value between habitats. For the variable “season”, fish were grouped based on the calendar date of capture: spring (21 April-6 June), summer (21 June-20 September), fall (21 September-20 December), and winter (21 December21 April). For the variable location, latitude and longitude were combined into a single variable via principal components analysis (PCA). The first PCA, retained for modeling efforts as the variable “location”, explained 97% of the variation in latitude and longitude. All statistical analyses were conducted in R 3.0.1 (R Development Core Team 2013). Bottlenose dolphin demographic groups were defined as follows: males (>6 yr of age), females (>6 yr of age), and juveniles (2 to 6 yr of age). Dolphins younger than 2 yr of age are not included in health assessments and, thus, not represented in this study. Nearly all calves leave their mothers around 6 yr of age, thus the age ranges for males and females (>6 yr of age) only reflect foraging by males and females independent from their mothers (Wells 1991). The package, Stable Isotope Analysis in R (SIAR) 4.2 (Parnell and Jackson 2013) was run within R 3.0.1 (R Development Core Team 2013) to provide dietary estimates for each bottlenose dolphin demographic group. SIAR requires isotope values for consumers, isotope values of prey species, and a TEF. Because SIAR cannot differentiate prey items with similar isotope values (Phillips et al. 2005), we used a k-means cluster analysis to group prey fish into four clusters. The 32 resulting clusters differed by trophic level and/or source of primary production at the base of the food web. The TEF value used in this study was based on stomach content data, molecular prey detection, prey isotope values, and muscle isotope values of stranded deceased dolphins from SB. First, a weighted average δ13C value of bottlenose dolphin diet was calculated as follows: Where δ13Cd is the average carbon isotope value of bottlenose dolphin diet, Fi is the fractional contribution of diet item i based on stomach content analysis or molecular prey detection (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013), and δ13Ci is the average carbon isotope value of diet item i as reported in this study. To determine the δ13C TEF the isotope value of the bottlenose dolphin diet (δ13Cd) was subtracted from the average SB dolphin muscle δ13C value (Rossman et al. 2013). The same method was then applied to determine the TEF for δ15N. With only two TEF values we could not provide an estimate of variance associated with trophic fractionation which was assumed to be negligible compared to other sources of isotopic variation. Because the TEF derives from isotope values of bottlenose dolphin muscle and the dietary estimates used isotope values of skin, the TEF determination was independent of data used in Bayesian dietary estimation. Stable isotope Bayesian ellipses in R (SIBER) including standard ellipse areas were produced using SIAR (Jackson et al. 2011). To test for significant differences we ran 100,000 Markov-chain Monte Carlo iterations for SEAb and constructed 95% credible intervals around the mean of each subgroup. The probability that there was a 33 significant difference in SEAb between demographic groups was determined by calculating the proportion of times the posterior estimate for one demographic group was smaller than another (Turner et al. 2010). We considered the two SEAb to be significantly different when no more than 5% of the posterior estimates for one group were smaller than those of another group (α = 0.05). For graphical representations we used standard ellipse areas controlled for small sample size (SEAc). RESULTS We assessed isotope values of prey species constituting 81% (stomach content analysis) or 84% (molecular prey detection) of bottlenose dolphin diet (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). Species average δ13C values ranged from -17.5‰ (ladyfish, Elops saurus, and threadfin herring, Opisthonema oglimum) to -12.9‰ (striped mullet, Mugil cephalus), and average δ15N values ranged from 7.8‰ (mojarra, Gerreid sp.) to 11.7‰ (ladyfish) (Table 1). Habitat, length, season, and location did not significantly influence the isotope values of pigfish, spot, sheepshead, or spotted seatrout. Pinfish δ13C values were significantly related to habitat and location (F2, 42 = 36.09, P < 0.001, F1, 42 = 5.20, P = 0.028, respectively). δ13C values decreased from northwest to southeast and from seagrass (mean ± standard deviation: -13.7‰ ± 1.2‰) to open bay (-15.5‰ ± 1.0‰) to mangrove habitat (-17.1‰ ± 1.0‰) (seagrass vs. open bay: P < 0.001, seagrass vs. mangrove: P < 0.001, mangrove vs. seagrass: P < 0.001). Length and season did not appear to influence pinfish δ13C values. Pinfish δ15N values demonstrated a significant relationship with habitat and length (F2, 42 = 6.43, P =0.004, F1, 42 = 5.80, P = 0.021, respectively) but not location or 34 Table 1. Bottlenose dolphin prey species δ13C and δ15N values (means ± standard deviation), the number of samples used to determine the average isotope value (n) dietary indicators, SCA and DNA and prey cluster designation. SCA and DNA are the fractional contribution of each species to the diet of bottlenose dolphins as determined by stomach content analysis or molecular prey detection (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). Prey cluster refers to the cluster designation as determined by K means cluster analysis. Asterisk indicates instances where Dunshea et al. 2013 report genus sp., the genus and species are provided here. 35 season. δ15N values of pinfish increased with length and were higher in open bay vs. seagrass habitat (9.3‰ ± 0.5‰ vs. 8.0‰ ± 1.3‰, P = 0.003). δ15N values from mangrove pinfish (8.6‰ ± 0.7‰) did not significantly differ from those of seagrass or open bay. The K-means cluster analysis of prey fish isotope values combined fish species that shared a common food web base (δ13C values) and trophic level (δ15N values) (Fig. 6). High δ13C values are indicative of seagrass based food webs (e.g., seagrass grazing pinfish, -13.7‰) and low δ13C values are associated with open bay and mangrove primary production (e.g., clupeids whose food web is generally phytoplankton based: threadfin herring, -17.5‰, scaled sardine, Harengula jaguana, -16.2‰). Cluster 1, contained high trophic level nonseagrass prey and included snook (Centropomus undecimalis), ladyfish, and spot. Cluster 2 consisted of high trophic level prey associated with seagrass and consisted of seatrout and crevalle jack (Caranx hippos). Cluster 3 included low trophic level, seagrass-associated species and consisted of Gulf toadfish (Opsanus beta), seagrass pinfish, pigfish, red drum (Sciaenops ocellatus), lane snapper (Lutjanus synagris), sheepshead, mojarra, and striped mullet. Cluster 4 contained low trophic level nonseagrass associated prey and consisted of threadfin herring, nonseagrass pinfish, and scaled sardine. Because pinfish isotope values significantly differed between habitats, pinfish were separated by habitat prior to the cluster analysis. This resulted in cluster 3 containing seagrass pinfish and cluster 4 containing nonseagrass pinfish with low δ13C values (open bay and mangrove). The mean isotope values and associated standard deviation for all species within a cluster 36 were used to estimate cluster averages and standard deviation, which were implemented as sources in the Bayesian dietary estimation. The weighted average δ13C and δ15N of SB bottlenose dolphin diet based on the relative contribution of prey from stomach content analysis or molecular prey detection was -14.2‰ and 8.9‰ and -14.5‰ and 8.9‰ respectively (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). Given the average isotope value for bottlenose dolphin muscle (-14.4‰ and 10.8‰ for δ13C and δ15N, respectively) the TEF estimate based on stomach content analysis was -0.1‰ for δ13C and 2.0‰ for δ15N. The TEF estimate based on molecular prey detection was 0.1‰ for δ13C and 2.0‰ for δ15N. The TEF used in this study was an average of the two values: 0.0‰ for δ 13C and 2.0‰ for δ15N.The mean skin isotope values, reported as mean ± standard deviation, for the three demographic groups were similar to one another: juveniles (δ13C = -14.9‰ ± 0.9‰, δ15N = 10.6‰ ± 0.6‰, n = 14), females (δ13C = -14.6‰ ± 1.3‰, δ15N = 11.2‰ ± 0.9‰, n = 14) and males (δ13C = -14.2‰ ± 0.4‰, δ15N = 10.7‰ ± 0.7‰, n = 14) (Fig. 6). 37 Figure 6. δ13C and δ15N values of prey clusters and bottlenose dolphin skin from different demographic groups including males (>6 yr old), females (>6 yr old) and juveniles (2 to 6 yr old). Prey clusters show mean with error bars depicting the standard deviation. Prey clusters were adjusted for trophic enrichment (cluster average + TEF). TEF estimates derive from this study (δ13C: 0.0‰, δ15N: 2.0‰), not the literature. The results of the Bayesian mass balance model, given as mean ± standard deviation, showed that juveniles consumed prey cluster 3 in the highest proportion (0.58 ± 0.09) (Fig. 7) followed by cluster 4 (0.31 ± 0.11), cluster 1 (0.06 ± 0.05), and cluster 2 (0.05 ± 0.05). Females consumed cluster 3 in the highest proportion (0.60 ± 0.11), followed by cluster 4 (0.20 ± 0.12), cluster 2 (0.11 ± 0.08), and cluster 1 (0.09 ± 0.07). Males consumed prey cluster 3 in the highest proportion (0.71 ± 0.07) followed by cluster 4 (0.14 ± 0.08), cluster 2 (0.09 ± 0.06), and cluster 1 (0.06 ± 0.05). 38 Figure 7. SIAR results for bottlenose dolphin demographic groups: juveniles (J; 2-6 yr old males and females), females, (F; >6 yr old) and males (M; >6 yr old). Horizontal lines within boxes represent mean dietary contributions of each prey cluster to the demographic group. Boxes enclose the 50% credible interval and vertical lines with end caps depicting the 95% credible interval. Cluster 1, contains snook, ladyfish, and spot. Cluster 2 contains seatrout and crevalle jack. Cluster 3 contains toadfish, seagrass pinfish, pigfish, red drum, lane snapper, sheepshead, mojarra, and striped mullet. Cluster 4 contains nonseagrass prey fish, threadfin herring, nonseagrass pinfish, and scaled sardine. Females had the largest SEAb at 3.59‰2 (95% CI: 2.15-6.00‰2) followed by juveniles at 1.93‰2 (95% CI: 1.10-3.21‰2), and males at 1.29‰2 (95% CI: 0.77- 2.14‰2) (Fig. 8). The SEAb of males was significantly smaller than that of females (P = 0.003) but not juveniles (P = 0.144). The SEAb of juveniles was significantly smaller compared to the SEAb of females (P = 0.046). SEAc was calculated for graphical representations of standard ellipse area (Fig.8). 39 Figure 8. Carbon and nitrogen isotope values of prey clusters and standard ellipses controlled for small sample size (SEAc) for female, male and juvenile bottlenose dolphins. The upper right inset table provides SEAc area (‰2), mean Bayesian standard ellipse area (SEAb) (‰2), and the lower (2.5%) and upper (97.5%) bounds for the 95% credible interval around the mean SEAb for males (M; >6 yr old), females (F; >6 yr old), and juveniles (J; 2 to 6 yr old). DISCUSSION Male, female, and juvenile bottlenose dolphins possess unique combinations of ecological, physiological, and social constraints (Wells 2003, 2014), all of which may impact how these different demographic groups find and consume prey. We probed differences in the foraging ecology of these three groups using stable isotope analysis and Bayesian modeling. Because our analyses included a large number of prey species (15) we performed cluster analysis to group prey. This resulted in ecologically significant 40 clusters differentiated by source of primary production at the food web base and/or trophic level. Our Bayesian mass balance modeling benefited from a TEF estimate that was, a) based on prey data specific to the SB bottlenose dolphin food web, b) independent of our skin isotope data used in SIAR and c) derived from two independent estimates of population diet, one based on stomach content analysis and the other on molecular prey detection (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). In using the average isotope value of muscle to produce a TEF that was later applied to Bayesian modeling based on skin data, we assumed that the TEF of muscle and skin were similar. This assumption is consistent with the findings of Borrell et al. (2012) and Fernández et al. (2011), who documented identical average δ13C and δ15N values for skin and muscle from cetaceans. For SB bottlenose dolphins, the mean δ13C and δ15N isotope values of skin and muscle differed by less than 0.1‰. The average TEF values calculated in this study were 0‰ for δ13C and 2.0‰ for δ15N. While our δ15N TEF is low compared to the often cited average of 3.4‰ (Post 2002), a growing body of literature documents widespread variability in TEF across and within taxa (McCutchan et al. 2003, Lecomte et al. 2011). Our values are in agreement with a low δ15N TEF expected for a consumers with a high protein diet and who utilize marine environments (Vanderklift and Posand 2003). Results from the Bayesian mass balance model indicate that all bottlenose dolphin demographic groups predominantly depend on low trophic level, seagrassassociated prey fish (prey cluster 3). Among the clusters, prey cluster 3 contains the largest number of species including both prey fish frequently small (e.g., pinfish, pigfish, 41 and mojarra) and more massive prey items (e.g., mullet). Prey cluster 3 is likely the most important dolphin diet because seagrass serves as an excellent foraging habitat, supporting high densities of prey fish and providing safety from predators in SB (e.g., bull sharks) (Barros and Wells 1998, Gannon et al. 2009, Mann et al. 2000, McHugh et al. 2011). Our findings are consistent with those of Barros and Wells (1998) documenting seagrass as an important habitat for bottlenose dolphins. In addition to prey cluster 3, juveniles, in particular, appeared to consume low trophic level, nonseagrass prey (cluster 4) to a larger extent than male or females. This may be related to physiological and behavioral constraints that are unique to juveniles. The acquisition of foraging skills by calves is likely a slow process; upon nutritional weaning (typically in second year of life), calves may not yet possess skills associated with complex foraging behavior typical of adults. For example, the detection and capture of prey species associated with structures (e.g., Gulf toadfish) or fast-moving high trophic level fish may be too difficult for young dolphins (Berens McCabe et al. 2010). The small gape size of juveniles may work in conjunction with undeveloped foraging skills to constrain diet to small, easily detectable, low trophic level prey, such as all members of prey cluster 4 and pinfish, pigfish and mojarra in prey cluster 3. However, the finding that high trophic level prey were not a large contributor to the diet of any demographic group is consistent with the observation that high trophic level prey species occur in only low abundances and may be too energetically costly for consumption at the population level. An increasing body of literature suggests that variation in resource use within and between individuals of a population is an important ecological parameter that has 42 profound implications for conservation biology (Bolnick et al. 2003, Johnson et al. 2009). To assess variation in the foraging behavior between male, female, and juvenile bottlenose dolphins, we used SEAb as a quantitative indicator of variation in resource use (Jackson et al. 2011). Male and female bottlenose dolphins appear widely divergent in their diversity of resource use. Males possess a significantly small SEAb, nearly one fourth the size of the female SEAb. The small SEAb size indicates that differences in foraging habits among males are small. Even though most male bottlenose dolphins possess home ranges larger than those of females (Wells 2003, Urian et al. 2009) and have access to numerous habitat types, the position and small size of the male standard ellipse indicates a predominant reliance on seagrass-associated prey. This may occur because seagrass habitat has one of the highest densities of prey fish of any habitat (Gannon et al. 2009) often including numerous large prey species (e.g., mullet), which generally provide more calories compared to smaller fish. Because gape size can be a constraint, the larger gape size of males offers an advantage. More importantly, consuming large prey allows males, relative to females and juveniles, to maximize their caloric intake while minimizing energy expenditure. In contrast to the males, the large SEAb of females indicates broader foraging habits. The large SEAb predominately derives from the wide range of δ13C values, an indicator of habitat use (i.e., seagrass vs. open water). This suggests that individual female dolphins consistently utilize a subset of available habitats (habitat specialization). Observations of SB bottlenose dolphins suggest a high degree of habitat specialization among females. For example, females occupy smaller home ranges compared to males (Wells 2003, Urian et al. 2009). For reproductively active females, 43 habitat familiarity, predator avoidance, and proximity to familiar female associates favor a small home range and place limitations on foraging habitat. Thus, some females in the SB population may specialize on prey from seagrass habitats while others may consume prey associated with phytoplankton based food webs. Thus, it appears that while most males specialize on seagrass-associated prey, females may specialize on a variety of habitats or prey resources. Furthermore, female bottlenose dolphin habitat selection appears correlated with trophic level. Females who forage in seagrass also consume lower tropic level prey compared to females who forage in open water. This likely results from seagrass associated female dolphins utilizing the abundant low trophic level prey commonly found in seagrass habitat. While low trophic level species are found in open water (e.g, clupeids) they do not substantially contribute to the diet of female bottlenose dolphins as indicated by SIAR results, stomach content analysis and molecular prey detection (Barros and Wells 1998, Berens McCabe et al. 2010, Dunshea et al. 2013). Samples obtained during health assessments are, out of necessity, generally from dolphins traveling in shallow habitats. This possibly introduces a bias favoring individuals who frequently utilize seagrass, a common habitat type for shallow water. However, a bias of this nature would likely impact males and females similarly yet, we document an SEAb for females significantly larger than that of males. Juveniles possessed an intermediate SEAb between males and females. Relative to females, the ellipse for juveniles is similar in spatial orientation but smaller in total area. The shape of the ellipse for juveniles is contracted in δ13C and lower in δ15N compared to females. The similarity in shape between the female and juvenile ellipses is likely the 44 result of maternal habitat selection and/or the high degree of philopatry demonstrated by calves newly independent of their mother (McHugh et al. 2011). The lower δ15N values suggest that juveniles feed at a lower trophic level than females possibly resulting from limitations of a small gape size and less developed foraging skills. Bottlenose dolphins have traditionally been described as opportunistic generalists (Shane et al. 1986). However, recent studies have demonstrated that bottlenose dolphins do not indiscriminately capture and consume prey; instead, they specialize on a subset of available prey, especially soniferous fishes (Berens McCabe et al. 2010), yet the manner in which dietary variability and specialization is partitioned within dolphin populations remains uncertain. In this study, we found an ecologically significant disparity in the diversity of resource use by male and female bottlenose dolphins, with females accounting for the majority of the variation in foraging habits at the population level. Differences in resource use among male, female, and juvenile bottlenose dolphins likely resulted from trade-offs associated with social interactions, predator avoidance, and energetic needs related to body size, activity levels, and reproductive condition. This dichotomy in resource use may have impacts for conservation and management. Because specialization in resource use within a population impacts social interaction and exposure to habitat degradation, certain subsets of the population may be more likely to strand as the result of disturbance. This is because individuals who utilize a particular foraging habitat may be predisposed to stranding or increased mortality if nutritional stress results from habitat loss or disturbance (Johnson et al. 2009). In addition, an elevated mortality risk may result from increased exposure to pathogens or diseased individuals, phenomena that may be promoted by some types of foraging 45 specialization. Consequently, foraging habits may play a critical role in understanding the ecology of phenomena such as unusual mortality events (Gulland and Hall, 2007). 46 LITERATURE CITED 47 LITERATURE CITED Barros, N. B., and R. Wells. 1998. Prey and feeding patterns of resident bottlenose dolphins (Tursiops truncatus) in Sarasota Bay, Florida. Journal of Mammalogy 79:1045-1059. 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Vanderklift, M. A. and S. Ponsard. 2003. Sources of Variation in Consumer-Diet δ15N Enrichment: A Meta-Analysis. Oecologia 136:169-182. Wells, R. S., M. D. Scott and A. B. Irvine. 1987. The social structure of free-ranging bottlenose dolphins. Current Mammalogy 1:247–305. Wells, R. S.1991. Bringing up baby. Natural History. August: 56-62. Wells, R. S. 2003. Dolphin social complexity: Lessons from long-term study and life history. Pages 32-56 in F. B. M. de Waal and P. L. Tyack, eds. Animal social complexity: Intelligence, culture, and individualized societies. Harvard University Press, Cambridge, MA. 50 Wells, R. S., H. L. Rhinehart, L. J. Hansen, et al. 2004. Bottlenose Dolphins as Marine Ecosystem Sentinels: Developing a Health Monitoring System. EcoHealth 1:246– 254. Wells, R. S. 2009. Learning from nature: Bottlenose dolphin care and husbandry. Zoo Biology 28:1-17. Wells, R.S. 2014. Social structure and life history of common bottlenose dolphins near Sarasota Bay, Florida: Insights from four decades and five generations. Pp. 149172 in J. Yamagiwa and L. Karczmarski, eds. Primates and cetaceans: Field research and conservation of complex mammalian societies. Springer, Tokyo, Japan. 51 CHAPTER 3 INDIVIDUAL SPECIALIZATION IN THE FORAGING HABITS OF FEMALE BOTTLENOSE DOLPHINS LIVING IN A TROPHICALLY DIVERSE AND HABITATRICH ESTUARY ABSTRACT We examined the prevalence of individual specialization in foraging habits (foraging habitat and trophic level) of female bottlenose dolphins resident to Sarasota Bay, FL by analyzing time series of stable isotope (δ15N and δ13C) values in sequential growth layer groups within teeth. The isotope data provide a chronology of foraging habits over the lifetime of the individual and allowed us to show that female bottlenose dolphins exhibit a high degree of individual specialization in both foraging habitat and trophic level. The foraging habits used by adult females are similar to those they used as calves and may be passed down from mother to calf through social learning. We also characterized the foraging habits and home range of each individual by constructing standard ellipses from isotope values and dolphin sightings data (latitude and longitude) respectively. These data show that Sarasota Bay bottlenose dolphins forage within a subset of the habitats in which they are observed. Moreover, females with similar observational standard ellipses often possessed different foraging specializations. Female bottlenose dolphins may demonstrate individual specialization in foraging habits because it reduces some of the cost of living in groups, such as competition for prey. 52 INTRODUCTION Predatory populations often meet their energetic needs by consuming prey from multiple trophic levels or food webs. Some populations accomplish this when individuals demonstrate a large degree of foraging diversity by exploiting a wide variety of prey species and/or habitats (individual generalists). In other populations, individuals use only a small subset of prey, or confines foraging to specific habitats (individual specialists). Because individual specialization impacts intraspecific competition, social interactions, and population viability, the degree to which a population is comprised of individual specialists vs. individual generalists has ecological consequences (Bolnick et al. 2003, Matich et al. 2010). Furthermore, as a consequence of foraging specialization, certain individuals may be predisposed to decreased pathogen exposure, increased reproductive success, or decreased risk of predation. Thus, understanding patterns of intraspecific resource use is critical understanding population dynamics (Mann et al. 2000, Darimont et al. 2007, Johnson et al. 2009). Carbon and nitrogen isotope values (δ13C and δ15N) are well-established tracers of foraging habitat and trophic level, respectively (Harrigan et al. 1989, Newsome et al. 2010, Rossman et al. 2013). δ13C values often differ among primary producers (e.g., low values for open water phytoplankton vs. high values for seagrass) that form the base of the food web and δ15N values increase with trophic level (Peterson and Fry 1987, Layman et al. 2011). Stable isotope values of metabolically inert tissues that are formed over time (e.g., growth layers in teeth, scutes, vibrissae) provide a chronological record of an individual’s habitat and trophic level (Mendes et al. 2006, Newsome 2009a, 2009b, Vander Zanden et al. 2010). Such isotope chronologies can be used to evaluate 53 the degree of foraging diversity within and between individuals and, hence, the degree of specialization within a population. The degree of foraging diversity within and between individuals is an indicator of total niche width (TNW). More precisely, TNW is the variance in the δ13C or δ15N values of the population and is partitioned into a within individual component (WIC) and a between individual component (BIC) (Bolnick et al. 2003, Newsome et al. 2009b). WIC is large in populations of individual generalists as each member of the population uses a wide range of habitats and trophic levels (Fig. 9A). In populations of individual specialists, BIC predominates, as individuals are invariant in their range of isotope values (Fig. 9B) (Bolnick et al. 2003, Newsome et al. 2009). Identifying patterns of individual specialization may be particularly important for coastal marine mammals which are subject to habitat loss and compete with humans for prey resources. This is the case for bottlenose dolphins (Tursiops truncatus) in Sarasota Bay, Florida (Rossman et al. 2013). This population is particularly amenable to an investigation of foraging specializations because they are year-round, multigenerational residents that have been extensively studied for more than 43 years (Wells 2003, 2014a, 2014b). Members of the population are generally of known age and reproductive history, deceased individuals are the subject of stomach content and stable isotope analyses, and an extensive observational program has been ongoing since the inception of the Sarasota Dolphin Research Program in 1970 (Barros and Wells, 1998, Wells 2003, 2009, 2014a, Berens McCabe et al. 2010, Rossman et al. 2013, 2014). While Sarasota Bay bottlenose dolphins prefer certain prey types at the population level (Berens McCabe et al. 2010) 54 Figure 9. The frequency of an isotope value over the lifetime of three individuals is depicted by red, blue and yellow curves in panels A and B. Arrows at the bottom of the curves reflect the degree of variation in isotope value over the lifetime of an individual also termed the within individual component (WIC) of the population’s isotope variation. Arrows between curves reflect the between individual component (BIC) of the isotopic variation in the population. (A) Isotope frequency curves for individual specialists, each with a narrow range in isotope values. In this case BIC is larger than WIC. (B) Isotope frequency curves for individual generalists, each with a wide range in isotope values. In this case BIC is much smaller than WIC. (C) Microdrilled tracks (green lines) imposed over a photograph of a bucco-lingual longitudinal section of a dolphin tooth. The table shows age class for each track and hypothetical δ13C data for two individuals. (D) Histograms for the hypothetical isotope data in panel C. The large BIC compared to WIC indicates that these dolphins are individual specialists. 55 and differences in foraging habits exist among demographic groups (Rossman et al. 2014), the degree to which they demonstrate individual specialization remains uncertain. Isotope analysis of sequentially micro-drilled tracks containing one or more growth layers provides a record of the foraging habits (foraging habitat or trophic level) of the individual over its lifetime (Fig. 9C). Low variance in isotope values among the tracks of an individual is consistent with the use of a particular foraging habitat or trophic level over time. In this case, WIC is small and BIC accounts for the majority TNW and the data reflect individual specialization (Fig. 9D). In this study, we assess the degree of individual foraging specialization within a population of bottlenose dolphins resident to Sarasota Bay by establishing an isotope chronology from teeth. Because previous work documented that relative to males, female dolphins exhibited a range in trophic level and higher diversity in foraging habitats, our investigation focuses on this group (Rossman et al. 2014). Additionally, examining female bottlenose dolphins allowed us to evaluate the relationship between foraging habit and reproductive success. To assess if an adult's foraging habit was predetermined by the habits developed as a calf, we modeled individual adult isotope values as a function of their calf isotope values. Finally, we compared isotope and sighting data to determine how foraging habits are related to the habitat associated with the individual’s observed range. 56 METHODS Sample site and acquisition Sarasota Bay is a complex series of shallow bays (< 4m deep, 40 km long) on the central west coast of Florida, communicating with the Gulf of Mexico through narrow, deep passes separating a series of narrow barrier islands. The study area encompasses a diverse array of habitats, including seagrass meadows, channels, mangrove fringing forests, human-altered shorelines, and open bay (Wilkinson 2014). All bottlenose dolphin tooth samples were obtained from females known to the Sarasota Dolphin Research Program, recovered as carcasses by Mote Marine Laboratory’s Stranding Investigations Program (Wells 2014b). Both sighting and reproductive success data were collected as part of the Sarasota Dolphin Research Program’s long term monitoring program (Wells 2003, 2009, 2014a). Sample Preparation Teeth were cut in buccal-lingual longitudinal sections using a water-cooled diamond bladed saw (Buehler IsoMet). Discrete tracks of hydroxylapatite containing one or more growth layer groups (GLGs, Hohn et al. 1989) were extracted with a computer guided micromill (Merchantek) with a drill bit 1 mm in diameter. Five tracks were milled from each tooth to produce hydroxylapatite samples weighing between 1.0 and 2.5 mg. The small size of bottlenose dolphin teeth resulted in some tracks containing more than one GLG. Tracks reflecting older portions of an individual’s lifetime (closer to the pulp cavity) contained more GLGs compared to tracks originating near the neonate line. After milling, teeth were visually inspected under a microscope to determine approximate age 57 classes for each track and validated by a second observer. Age class estimates for tracks 1-5 were 0-1 yr, 1-2 yr, 2-4 yr, 4-8 yr, and >15 yr (referred to as “adult”), respectively. Substantial wear on samples from FB 41 and FB 9 prevented the sampling of age class one. Milled tooth powder was directly deposited into 9x5 mm silver capsules (Costech). Hydroxylapatite was demineralized with 100 µL of 1 N HCl pipetted into each capsule to isolate the organic portion of the tooth, dentin, which makes up approximately 30% by dry weight (Koch 2007). Samples were left at 4oC over night then dried in a 60oC oven. Isotope values were determined using an elemental analyzer (Eurovector) interfaced to an Isoprime mass spectrometer (Elementar Americas Inc.). Isotope values are expressed as: δX = {(Rsample / Rstandard ) – 1} x 1,000 where X represents 13C or 15N, and R represents the abundance ratios: 15N/14N 13C/12C or respectively. In-house standards used for δ13C and δ15N were calibrated with respect to international scales V-PDB and air respectively. In-house precision was +/0.2‰ for δ13C and δ15N values. To ensure isotopic reproducibility, three teeth were sectioned longitudinally to produce two equivalent halves per tooth. The isotope values of corresponding age classes from each half of the tooth were analyzed and the average difference between corresponding tracks was estimated from the data. Statistical Analysis As described below, we used a Bayesian approach to evaluate our statistical models. Female bottlenose dolphin isotope values were modeled as a general linear mixed 58 model containing two categorical explanatory variables, individual and age class, in a two-way ANOVA design. Because we were interested in generalizing the effect of the variable “individual” to females in the bottlenose dolphin population of Sarasota Bay, it was modeled as a random effect (Bolker et al. 2009). We also were interested in estimating the foraging habits associated with specific bottlenose dolphin age classes, and for this reason, the variable “age class” was incorporated into the model as a fixed effect (Bolker et al. 2009). We also constructed reduced models to examine the influence of the variables “age class” or “individual” on isotope values and identified the most predictive model using deviance information criterion (DIC). R2 values for the reduced model containing the variable “individual” are statistically equivalent to BIC/TNW (Newsome et al. 2009). The ratio of BIC/TNW was used as an indicator of the degree of individual specialization with values near 0 indicating that female bottlenose dolphins are generalists and values approaching 1 identifying a high degree of individual specialization. We modeled the relationship between adult δ13C and δ15N values and reproductive success using linear regression. Reproductive success was defined as the number of calves a female produced surviving to age three divided by the number of years from becoming reproductively active until death or from first being observed until death. Our model of the influence of foraging habits on reproductive success is limited by lack of information on environmental variables (e.g. red tide) and other covariables (e.g. body condition) that also may be influential to reproductive success. The model was bivariate because our a priori hypothesis was that foraging habit was the dominant 59 control on reproductive success and an assessment of numerous covariates is beyond the scope of this study. Another goal of this study was to determine if particular foraging habits used as a calf predispose an individual to exploiting the same foraging habits as an adult. To evaluate this possibility, we modeled adult isotope values as a function of their mean calf isotope values, using a linear regression. Calf isotope value was determined by averaging age classes 1-2 yr and 2-4 yr, the time period when a calf is likely to be in close proximity to its mother (Wells 2003, Wells 2014a). We examined individual foraging habits and home range by constructing two sets of standard ellipses using the R package, SIAR (Parnell et al. 2008, Jackson et al. 2011, Rossman et al. 2014). δ13C and δ15N values were used to create standard ellipses representing foraging habits over the lifetime of the individual (“isotope standard ellipses”) and latitude and longitude from sightings were used to construct “observational standard ellipses.” An individual’s mean δ13C and δ15N or mean latitude and longitude define the center of the standard ellipse and the shape and orientation are determined by a covariance matrix (Jackson et al. 2011). Observational standard ellipses were plotted alongside a habitat map of Sarasota Bay to enable a visual comparison of an individual’s sightings and Sarasota Bay habitat types (Wilkinson 2014). While the benefits of Bayesian analysis of mixing models within stable isotope ecology are well known (Parnell et al. 2008), Bayesian interpretation of common hypothesis testing models such as ANOVA and regression is rare. For this reason, we suggest scientists unfamiliar with Bayesian model analysis see Kery (2010). All models 60 in this study were assessed using a Bayesian hierarchical approach with the programs R (R core development team, 2013) and Jags (Plumber, 2003). We ran three Markov Chain Monte Carlo chains for 32,000 iterations with the first 2,000 discarded as burn in. Bayesian analysis requires that priors be specified for model parameters describing the current state of knowledge. We allowed parameter estimates to derive predominately from the data by using vague, uninformative priors. Model convergence was monitored via the R-hat statistic (Gelman and Hill, 2007). The R-hat statistic examines the variance ratio of the MCMC algorithm within and between chains across iterations for each parameter value. R-hat values near one indicate convergence and values below 1.2 are considered acceptable (Gelman and Hill, 2007). All R-hat values in this study were below 1.01. We used the approach of Gelman et al. (1996), to calculate Bayesian p-values which assess the adequacy of our models. We defined a discrepancy value, D, (the summation of the square of the observed values minus the predicted values obtained at each iteration of the MCMC algorithm). By simulating data sets from the posterior distribution and computing the discrepancy measure, Dsim, a reference distribution is computed for the simulated data set. The Bayesian p-values are the probability: P(D>Dsim) (Gelman et al. 1996). Extreme values (less than 0.05 or greater than 0.95) indicate inadequate modeling of the data. All Bayesian p-values in our study were 0.5-0.6 indicating that our models provided an adequate description of the data. Lastly, while model selection involving random effects models is difficult, we used DIC, the most widely used goodness of fit criterion in Bayesian applications (Gelman et al. 2013, Tenan et al. 2014). 61 We express parameter estimates as a mean and credible interval (CI). The latter represents the range which encompasses a 95% probability of containing the true parameter value. For example, CI of the slope from a regression that does not contain zero would indicate a “significant” relationship between the two variables tested. In this study we also incorporated contrasts between successive age classes into our Bayesian analysis. Differences between age classes were identified by probabilities. For example, in a contrast to determining if age class 0-1 is larger than age class 1-2, probability values greater than 0.95 (P>0.95) indicate age class 0-1 is larger than age class 1-2 while low probabilities (P<0.5) indicate age class 1-2 is smaller than age class 0-1. RESULTS Tooth GLG stable isotope values ranged from 9.0‰ to 14.4‰ (mean ± SD: 11.1‰ ± 1.1‰) for δ15N and from -12.3‰ to -8.6‰ (mean ± SD: -10.5‰ ± 1.0‰) for δ13C across all age classes. In our comparison of corresponding age classes of tooth halves, the average differences in δ15N or δ13C was 0.4‰ ± 0.4‰ for three teeth. Given that these data derive from the analysis of tooth halves; the total error is low relative to the analytical reproducibility of 0.2‰. Among the ANOVA models for nitrogen isotope values, DIC indicated the full model with individual and age class provided the best predictive capacity (Fig. 10). The high R2 associated with individual (0.60) indicates a large BIC/TNW compared to WIC/TNW (0.40) (Table 2). Of the 40% of the total isotopic variance accounted for by WIC, 12% (relative to TNW) is explained by the variable “age class.” Contrasts for δ15N values between subsequent age classes showed 0-1 yr was 62 significantly higher than 1-2 yr (P=1.0), 1-2 yr was significantly higher than 2-4 yr (P=0.98), and age class >15 was significantly higher than 4-8 (P=0.99). For δ13C, age class did not account for any of the variance in the data (Table 2). The ANOVA model Table 2: ANOVA results for competing models where δ15N and δ13C values are a function of individual and/or age class. Deviance information criterion (DIC) values are used for model selection. The lowest DIC value identifies the model with the highest predictive capacity. The R2 value indicates the amount of variation in the dependent variable explained by the model. Our Bayesian treatment of the data provides a 95% CI for the R2 denoted by a lower bound (CI: 2.5%) and an upper bound (CI: 97.5%). δ15N model DIC R2 CI: 2.5% CI: 97.5% individual + age class 128.90 0.81 0.76 0.84 individual 175.50 0.60 0.52 0.66 age class 220.90 0.11 0.01 0.19 δ13C model DIC R2 CI: 2.5% CI: 97.5% individual 71.50 0.88 0.85 0.90 individual + age class 80.00 0.88 0.85 0.90 age class 216.90 -0.07 -0.19 0.00 with only “individual” provided the highest predictive capacity, where the R2 indicates a large BIC/TNW and small WIC/TNW with respect to foraging habitat (Fig. 11, Table 2). Reproductive success was not related to adult δ15N or δ13C values (slope CI: 0.38 – 0.10, -0.10 – 0.41, respectively). The 95% CI for the slopes of the regressions describing adult isotope value as a function of calf isotope value did not contain zero, indicating a significant relationship between the two variables (Fig. 12). 63 Figure 10. δ15N values from bottlenose dolphin teeth for five age classes covering the lifetime of the individual. Age class >15 is adult. Age classes were determined from bottlenose dolphin tooth ontogeny. Individuals are differentiated by color and Sarasota Dolphin Research Program identification codes given in the figure legend. The inset shows average δ15N values for each age class (closed triangles) and associated credible intervals (bars) from Bayesian ANOVA. 64 Figure 11. δ13C values from bottlenose dolphin teeth for five age classes covering the lifetime of the individual. Age class >15 is adult. Age classes were determined from bottlenose dolphin tooth ontogeny. Individuals are differentiated by color and Sarasota Dolphin Research Program identification codes given in the figure legend. 65 Figure 12. An individual’s isotope value as an adult plotted against its isotope value as a calf, A) carbon isotope values and B) nitrogen isotope values. Calf δ13C or δ15N value is the average of age classes 12 yr and 2-4 yr and adult isotope values is age class > 15 yr. Individuals are differentiated by color (same color scheme as earlier figures) and Sarasota Dolphin Research Program identification codes given in the figure legend. Regression equations are shown in the bottom right of each panel. For δ15N the 95% credible interval for the slope was 0.381.06 and for the intercept it was -0.56-4.44. For δ13C the 95% credible interval for the slope was 0.72-1.14 and for the intercept it was -0.861.34. The 95% credible intervals for the slopes are depicted on the graphs as grey dashed lines. R2 values and their 95% confidence intervals are shown in the lower right of each graph. The R2 value documents the proportion of the variance in adult isotope values that can be explained by calf isotope values. 66 Individual standard ellipses clustered into three distinct groups. Group 1 contained 7 individuals with high δ15N values and low δ13C values relative to the average isotope value for the population (Fig. 13). In comparison to the average isotope values of the population, Group 2 contained 6 individuals with lower δ15N values and higher δ13C values and Group 3 contained only two individuals who exhibited intermediate and low δ13C and δ15N values, respectively. Observational standard ellipses showed that while some individuals used nearly the entire study area, others were only observed in the northern or southern portion of Sarasota Bay (Fig. 14). For example, the observational standard ellipses of FB 9 and FB 57 extend over the northern portion of Sarasota Bay near Palma Sola Bay while FB 195 and Bardot (Group 3) predominately use the southern portion of our study area, Little Sarasota Bay. Even though northern Sarasota Bay has extensive seagrass meadows, dolphins using this portion of Sarasota Bay still interfaced with multiple habitat types. 67 Figure 13. Isotope standard ellipses representing variation in δ13C and δ15N values for each individual over their lifetime. Mean δ13C and δ15N values for each individual define the center of the standard ellipse and the shape and orientation are determined by a covariance matrix. Individuals appear in three non-overlapping groups. Compared to the population mean (-10.5‰ and11.1‰ for δ13C and δ15N respectively) Group 1 is defined by high δ15N values and low δ13C values, Group 2 has low δ15N values and high δ13C values, and Group 3 has low δ15N values and intermediate δ13C values. Individuals are differentiated by color using the same scheme as in earlier figures. Sarasota Dolphin Research Program identification codes given in the figure legend. 68 Figure 14. Maps of Sarasota Bay depicting habitat distribution (left) and observational standard ellipses generated from the latitude and longitude data from sightings (right). Data for habitat use was obtained from Wilkinson (2014). Inset depicts location of Sarasota Bay in relation to the state of Florida. Colors represent different habitats in Sarasota Bay as defined in the figure legend. Individuals in the observational standard ellipse maps are differentiated by color (same color scheme as earlier figures) and Sarasota Dolphin Research Program identification codes given in the figure legend. 69 69 DISCUSSION Our data indicate significant variation in trophic level over the lifetime of female Sarasota Bay bottlenose dolphins but little variation in habitat use. We also show that variation within the population predominately derives from individual specialization as evidenced by large BIC values. Despite large differences among individuals, foraging habits were not correlated with reproductive success. This may suggest that multiple foraging strategies are successful in providing female bottlenose dolphins adequate nutrition to reproduce, or that other covariates (e.g. environmental variables) are more influential on reproductive success. Ontogenetic changes in trophic level and differences between individual bottlenose dolphins can be inferred from δ15N values (Fig. 10). Nearly every individual within the population showed similar trends in δ15N over their lifetime. These include a decrease in δ15N between age classes 0-1 yr and 2-4 yr and an increase in δ15N between age class 4-8 yr and >15 yr (adult). The early-in-life decrease is likely related to weaning. While consuming milk, calves are feeding at one trophic level above their mothers. For bottlenose dolphins, we expect an increase of 2.0‰ for each trophic level (Rossman et al. 2014). Thus, the δ15N value of calf tissue formed while exclusively consuming milk should be 2.0‰ higher than that of their mother. The decline in δ15N between age classes 0-1 yr and 2-4 yr, 1.4‰, was less than a full trophic level suggesting that calves derive nutrition from sources other than milk as early as their first year. This is consistent with observational data indicating that calves supplement their diet with fish within the first few months of life (Wells, 2003). Bottlenose dolphin δ15N values reach a minimum by age class 2-4 yr, in agreement with observational findings 70 that calves obtain the vast majority of their nutrition from fish by 2 years of age (Perrin and Reilly 1984, Wells and Scott, 1999, Wells 2003, Wells 2014a). In addition to the early decline, we observed an increase in trophic level between age classes 4-8 yr and >15 yr. This result parallels previous demographic comparisons showing that juvenile dolphins (less than 6 yrs old) feed at a lower trophic level than adult females (Rossman et al. 2014). Previous studies of sperm whales, killer whales and Commerson’s dolphins which documented a similar increase in δ15N values with age, attributed the trend to many factors including changes in trophic fractionation due to growth rate, a change in diet resulting from leaving the natal band or offshore migration, or an increase in the size of prey consumed (Mendes et al. 2006, Newsome et al. 2009, Riccialdelli et al. 2013). We cannot exclude isotope effects resulting from changes in growth rate. However, the observations over decades that Sarasota Bay females associate with their natal band and remain coastal residents throughout their life (Wells 2003, Wells 2014a), indicates that migration does not influence age related trends in δ15N for female Sarasota Bay bottlenose dolphins. The low δ15N value of age classes 2-4 yrs and 4-8 yrs may result from reliance on pinfish, the lowest trophic level diet item consumed by Sarsota Bay dolphins (Rossman et al. 2014). The increase in female bottlenose dolphin δ15N values in the >15 yrs age class likely reflects the ability to consume larger, higher trophic level fish as the result of larger gape size or development of foraging skills (Mendes et al. 2006, Riccialdelli et al. 2013, Rossman et al. 2014). Unlike trophic level, δ13C values suggest that there is no ontogenetic trend in foraging habitat. However, the large BIC/TNW, indicates that individuals use only a subset of the foraging habitats available to the population. Individual specialization of 71 bottlenose dolphins in habitat and trophic level, may result from social learning (Sargeant and Mann 2009, Tinker et al. 2009). Social learning may be facilitated when there are extended periods of association between mothers and offspring (Wells 2003, 2014a, Sargeant and Mann 2009). Although some may be capable of nutritional independence after their first year of life, calves generally stay in close proximity to their mothers until 3 to 6 yrs old (Wells, 2003, 2014a). The long period of mother-calf association has been hypothesized as critical to the social development of the calf (Wells et al. 2003, 2014a, Sargeant and Mann 2009). Moreover, the close association between mother and calf provides opportunity for vertical transmission of individual foraging specializations (Tinker et al. 2009). Our results showing that the isotope values of adults are predicted by those of calves support the role of social learning in the development of calf foraging skills. To further explore variation in foraging habits among bottlenose dolphins from Sarasota Bay, we constructed isotope standard ellipses. Standard ellipses describe variation in foraging habits over a dolphin’s lifetime and, are thus, an indicator of individual niche width. This construct is particularly appropriate for Sarasota Bay bottlenose dolphins, where isotope values have been interpreted to reflect trophic level and foraging habitat is well documented (Rossman et al. 2013). Standard ellipses of females span a broad range of δ13C and δ15N values (ca. 3‰; Fig. 13). With the exception of two dolphins, individuals cluster into two groups (groups 1 and 2), with non-overlapping δ13C values and a wide spread in δ15N (ellipse center range of 2.5‰). This observation parallels our previous study describing prey isotope values (Rossman et al. 2014). Prey were clustered into four groups 72 characterized by either high or low δ13C values, reflecting seagrass and nonseagrass habitats (i.e. channel, sand flat, open water, mangrove), respectively. Each prey cluster was also distinguished by a large range in δ15N values, indicating high trophic diversity within both seagrass and nonseagrass habitats. Because δ13C values are transferred up the food web, unique δ13C values of the two bottlenose dolphin ellipse clusters differentiate individuals that forage in seagrass and nonseagrass habitats. Furthermore, the large variation in δ15N exhibited by the two main groups suggests that individuals specialize on prey from different trophic levels. Relative to clusters 1 and 2, the ellipse center of cluster 3 is intermediate and the δ15N values are lower. Unlike the other clusters, individuals from cluster 3 are from Little Sarasota Bay in the southern portion of our study area. While it is difficult to draw meaningful conclusions from two individuals, their relatively low δ13C and δ15N values may be associated with increased foraging on low trophic level, nonseagrass prey such as clupeids (Rossman et al. 2014). Little Sarasota Bay is poorly flushed compared to Sarasota Bay and may possess different assemblages of prey fish (Sheng and Peene 1992). Thus, the unique isotope values of cluster 3 may reflect the response of bottlenose dolphins to differences in habitat and prey availability. To determine if individual foraging specializations result from habitat heterogeneity, we compared our interpretations of foraging habits from isotope standard ellipses to observational standard ellipses and habitat distribution maps. Observational standard ellipses show that the home range of each individual bottlenose dolphin circumscribes a range of habitats. For example, FB 59 was observed in seagrass, mangrove and open water. Yet, her isotope standard ellipse indicates that FB 59 tended 73 to forage in nonseagrass habitat. Clusters 1 and 2 differentiate on the basis of foraging habitat, yet their observational standard ellipses demonstrate largely overlapping habitat use. This is illustrated by FB 19 and FB 111 who have similar observational standard ellipses, yet their isotope standard ellipses indicate unique foraging habits. Relative to FB 111, FB 19 had a greater tendency to forage in seagrass. Thus, two individuals who shared nearly identical ranging patterns can possess very different foraging habits. While bottlenose dolphins are observed in many different food webs, they do not indiscriminately forage but rather specialize on a subset of the habitats used by the population. Heterogeneity in habitat type within a confined geographic range is thought to promote foraging generalization (Miller et al. 2009, Montevecchi et al. 2009, Matich et al. 2011). Yet, in Sarasota Bay, where seagrass, mangrove and phytoplankton based food webs are largely overlapping, bottlenose dolphins demonstrate significant individual specialization. Enhanced foraging efficiency and intraspecific competition likely promote individual specialization even despite diversity of food webs within Sarasota Bay. By consistently utilizing a particular foraging strategy, dolphins likely enhance their efficiency at capturing and consuming prey. Switching to a new habitat may require a unique set of skills costing time and effort to learn (Tinker et al. 2009). Furthermore, results from our study support the findings of McHugh et al. (2011) and indicate that dolphins continue to use their natal foraging habitat after independence from their mother, a trend that may result from the experience and skills gained specific to their natal habitat. However, our data set contained two mother-daughter pairs FB 59, daughter of FB19, and FB 9 daughter of FB 63 possessing dissimilar isotope values. 74 Although sample size is low, in both cases mother and daughter were in different groups indicating that the development foraging habits may be complex. In addition to foraging strategy and skill development, the social structure of female bottlenose dolphins may promote individual specialization. Females live in fluid social groups (bands) often associating with individuals of a similar reproductive status (Wells 2003, 2014a). While living in a group may confer many benefits (predator avoidance, shared rearing of offspring, observational learning opportunities for offspring), it also potentially results in increased competition for prey resources (Connor et al. 2000). The observation that females with nearly identical home ranges often have dramatically different foraging habits may indicate one way dolphins decrease intraspecific competition within female bands. This partitioning of resources would allow females the benefits of social living while negating some intraspecific competition. The high degree of specialization in the female dolphins of Sarasota Bay has management and conservation implications. We show that individual dolphins are not ecologically equivalent and each dolphin contributes to the large diversity of foraging habits observed at the population level. The loss of even a few individuals could result in a reduction in the foraging diversity for the Sarasota Bay population. The significance of this relates to the transmission of foraging habits from mother to calf through social learning whereby the removal of individuals may result in the loss of specific foraging habits for generations. For instance, the loss of individuals from group 1 (nonseagrass specialists) coupled with a seagrass die-off may destabilize the Sarasota Bay dolphin population and jeopardize population viability. Furthermore, because each bottlenose dolphin may possess unique foraging habits, the prevalence of human induced mortality 75 of bottlenose dolphins is of particular concern (Wells et al. 2008, Wells et al. 2014b). 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