GENETIC CORREMWON AND RESPONSE 330 SELECWON {N SiMUM’s’EG WPULATEDNS “s’hesis for the Degree of Ph. D. MIiEé-HGAN STATE UNIVERSUY ROBERT JACK PARKER 19% 'fHESls- This is to certify that the thesis entitled GENETIC CORRELATION AND RESPONSE TO SELECTION IN SIMULATED POPULATIONS presented by Robert J. Parker has been accepted towards fulfillment of the requirements for M;— degree in m * aim) 9. 7119124424, Major professor Due 31 October 1966 0-169 GENETIC CORRELATION AND RESPONSE TO SELECTION IN SIMULATED POPULATIONS By Robert Jack Parker AN ABSTRACT OF A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Department of Dairy 1966 ABSTRACT GENETIC CORRELATION AND RESPONSE TO SELECTION IN SIMULATED POPULATIONS by Robert Jack Parker The effects of truncation selection of a primary trait upon the genetic correlation and the correlated response in a secondary trait were examined. Genetic pOpulations and the process of selection were simulated through the use of random numbers generated by a computer. Selection was made for one of two quantitative traits, and the correlated response in the other trait was measured in each generation. The pOpulation was bisexual diploid and the traits were expressed in both sexes. The size of the population of parents was 48 in each generation and mating was random, the number of offspring produced being determined by the level of selection. Each trait was controlled by 48 loci segregating independently, effects were equal at every locus, and gene frequency was arbitrarily set at 0. 5 at each locus in the initial generation. Three degrees of genetic correlation, three levels of selection, and three levels of environmental variation were simulated. Two models of gene action, an additive model and a model of complete dominance, were considered. In the model of complete dominance, the experiment was carried out 1 2 separately for Opposite directions of selection. The genetic correlation was determined by the number of loci which affected both traits and was measured each generation as the product-moment correlation of genotypic values and by two methods utilizing phenotypic covariances between parent and Offspring. In the additive model the genetic correlation, measured as the correlation of genotypic values in each offspring generation, remained consistently near its initial level at all levels of environment when the fraction of Offspring saved as parents was as high as one-half. When the fraction of offspring saved became as low as one-fifth, the genetic correlation decreased. A closer examination of the genetic correlation indicated that at low selection intensity the genetic covariance between the traits was maintained. With greater selection intensity, the genetic covariance decreased, but the genetic variances of the traits declined proportionately causing the genetic correlation to be maintained. Truncation selection caused a decrease in the genetic cor- relation in those offspring selected to become parents of the next generation. The amount of reduction depended on the heritability of the selected trait rather than on the degree of truncation selection. 3 Estimates of genetic correlation obtained from phenotypic covariances between parent and offSpring fluctuated markedly from the true correlation in the small populations simulated. The correlated response of the unselected trait to selection of the primary trait agreed closely with response expected from theoretical considerations. In the model of complete dominance, the change in the genetic correlation when selection was by upper truncation followed essentially the same pattern as in the additive model. When selection was by lower truncation, the behaviour under selection Of the genetic correlation conformed to that for the additive model although the decrease in the correlation at high intensity of selection was more rapid. As in the additive model, truncation selection caused a decrease in the genetic correlation in the offspring selected to be parents whether selection was by upper or lower truncation. Estimates of genetic correlation computed from phenotypic covariances between parent and off3pring were also poor in the model of complete dominance. The reaponse of the genotypic mean of the unselected trait to selection of the primary trait in opposite directions was quite symmetrical for the first few generations but became distinctly asymmetrical in later generations. At low levels of selection the response was fairly linear but became distinctly curvilinear as the intensity of selection increased. GENETIC CORRELATION AND RESPONSE TO SELECTION IN SIMULATED POPULATIONS BY Robert Jack Parker A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY ’ Department of Dairy 1966 ACKNOWLEDGEMENTS I wish to express my gratitude to Dr. Lon D. McGilliard for the consistently sound advice courteously extended throughout my period of graduate study and for the patient guidance provided during the preparation of this thesis. The valuable suggestions contributed by Dr. John L. Gill are also gratefully appreciated. I would like to acknowledge the friendly counsel of my fellow graduate students, Arthur Dayton and William Wunder, who helped make the period of graduate study more enjoyable and rewarding. I am also grateful for the financial assistance provided by the Department of Dairy in the form of the C. E. Wilson Research Fellowship. , ii TAB LE OF CONTENTS Page Acknowledgments................... ii List of Tables 0 O O O C O O O O O O O O O O O O O O I 0 v ListofFigures.................... vi Introduction ............. . . . . . . . . . 1 ReviewofLiterature................. 4 Methods and Procedure . . . . . . . . . . . . . . . 30 The Experimental Design and Parameters Simulated O O O O O I O O O O O O O C C C. O O O O 30 The Structure of the Initial Population . . . . . 33 Simulation of the Genetic Correlation . . . . . . 37 The Mechanics of Simulation . . . . . . . . . . . 44 Results and Discussion . . . . . . . . . ...... . 58 The Additive Model . . . ..... . . . 58 The Effect of Selection on the Genetic Correlation O O O O O O O O O O I O O O O O O 59 The Genetic Correlation in the Truncated Distribution . . . . ...... . . . . . . . 78 The Estimates of Genetic Correlation from Phenotypic Covariances between Parent and Offspring O O O O O O O O O O O O O O O O O 80 Correlated Response to Selection . . . . . . 85 The Model of Complete Dominance . . . . . . . 96 The Effect of Selection on the Genetic Correlation................. 97 The Genetic Correlation in the Truncated Distribution................. 126 iii Page The Estimates of Genetic Correlation obtained from Phenotypic Covariances between Parent and Offspring . . . . . . . . 128 Correlated Response to Selection . . . . . . 132 Application of Results and Suggestions for furtherResearch................. 146 Summary and Conclusions . . . . . . . . . . . . . . 149 Literature Cited 0 O O O O C O O O O O O O O O O O O O 156 iv LIST OF TAB LES Table Page 1. Deviation of the genetic correlation by parent- offspring covariances from the product- moment correlation of genotypic values. (Additivemodel)................. 83 2. The response in trait X and correlated response in Y at three levels of genetic correlation, measured as per cent of selection goal achieved at the 15th and 30th generation (Additivemodel)................ 94 3. Deviation of the genetic correlation by parent- offspring covariances from the product- moment correlation of genotypic values (Complete dominance - upwards selection) . . 130 4. Advance possible in the genotypic mean of X and Y by different methods of selection and at different degrees of genetic correlation . 136 5. The response in trait X and correlated response in Y at three levels of genetic correlation, measured as per cent of selection goal achieved at the 15th and 30th generation. (Complete dominance, selection by upper truncation.)...................141 6. The response in trait X and correlated response in Y at three levels of genetic correlation, measured as per cent of selection goal achieved at the 15th and 30th generation (Complete dominance, selection by lower truncation.)...................143 Figu 1.1 -m 1.2 1.3 2.1 2.2 2.3 2.4 LIST OF FIGURES Figure Page 1. 1 Change in genetic correlations at three levels of selection when hi - 0. l (additive made 1) O O O O O O O O O O O O O O l. 2 Change in genetic correlations at three levels of selection when hk- 0. 4 (additive model) . . l. 3 Change in genetic correlations at three levels of selection when hi- 0. 7 (additive madel) O C O O O O C O O O O O O C O 0 63 Z. l The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 8 and hi: 0. l (additive model) . . 67 2.2 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 5 and h'xIBO. l (additive model) . . . 68 2. 3 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b80. 2 and hk=0. l (additive model) . . . 69 2. 4 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 8 and his: 0. 4 (additive model) . . . 70 2. 5 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 5 and hy- 0.4 (additive model) . . . 7l Fi 2.6 2.7 2.8 2.9 3.1 3.2 3.3 4.1 4.2 4,3 5.1 Figure 2.6 2.7 2.8 2.9 3.2 3.3 4.2 4.3 5.1 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-0.2 and Iii-0.4 (additive model) . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 8 and bah-O. 7 (additive model) . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 5 and hi-O. 7 (additive model) . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0.2 and hi-o. 7 (additive model) . . . Mean genetic progress at three levels of selection when hit-0. l (additive model) . . '. Mean genetic progress at three levels of ‘ selection when hit-0'4 (additive model) . . . Mean genetic progress at three levels of selection when hk-O. 7 (additive model) . . Change in genetic correlations at three levels of selection when hk-O. 1 (complete dominance). Selection by upper truncation . . . Change in genetic correlations at three levels of selection when h'x- 0. 4 (complete dominance). Selection by upper truncation . . Change in genetic correlations at three levels of selection when h); '-0. 7 (complete dominance). Selection by upper truncation. . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 8 and 11* =0. 1 (complete dominance) Selection by upper truncation . . . . . . . . . . vii Page 72 73 74 75 87 88 89 98 99 100 103 FiguI 5.2 5.3 ' 5.4 5.5 5.6 5.7 5.8 Figure 5.2 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 5 and Iii-0. 1 (complete dominance) Selection by upper truncation . . . . . . . .. . . 5. 3 The relationship between the genotypic 5.4 5.5 5.6 5.7 5.8 variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 2 (and h);- 0. 1 (complete dominance) Selection by upper truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when halo. 8 and hi. 0. 4 (complete dominance) Selection by upper truncation . . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 5 and his: 0. 4 (complete dominance) Selection by upper truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 2 and hi: 0. 4 (complete dominance) Selection by upper truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b .0. 8 and hi- 0. 7 (complete dominance) Selection by upper truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when bBO. 5 and h;‘=0. 7 (complete dominance) Selection by upper truncation . . . . . . . . . . viii Page 104 105 106 107 108 109 110 Figu 5.9 6.1 6.2 < 6.3 ( 7.1 '. 7.2 7.3 Figure 5. 9 The relationship between the genotypic 6.1 6.2 6.3 7.2 7.3 7.4 variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 2 and hi- 0. 7 (complete dominance) Selection by upper truncation . . . . . . . . . . Change in genetic correlations at three levels of selection when hit: 0. 1 (complete dominance) Selection by lower truncation . . . Change in genetic correlations at three levels of selection when hkao. 4 (complete dominance) Selection by lower truncation . . . Change in genetic correlations at three levels of selection when hiBOo 7 (complete dominance) Selection by lower truncation . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 8 and hk= 0. 1 (complete dominance) Selection by lower truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 5 and hi=0. 1 (complete dominance) Selection by lower truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 2 and hit. 0. 1 (complete dominance) Selection by lower truncation . .. . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 8 and hi- 0. 4 (complete dominance) Selection by lower truncation . . . . . . . . . . ix Page 111 113 114 115 117 118 119 120 Figu 7.5 ' 7.6'1 7.7 'I 7.8". 7.9 8.1 8.2 Figure 7.5 7.6 7.7 7.8 7.9 The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 5 and hk-O. 4 (complete dominance) Selection by lower truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when halo. 2 and hit: 0. 4 (complete dominance) Selection by lower truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b=0. 8 and I a 0. 7 (complete dominance) Selection by lower truncation . . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 5 and bk -0. 7 (complete dominance) Selection by lower truncation . . . . . . . . . The relationship between the genotypic variances, covariance, and genetic cor- relation at three levels of correlation when b-O. 2 and hk-O. 7 (complete dominance) Selection by lower truncation . . . . . . . . . . Mean genetic progress at three levels of selection when h," -0. 1 (complete dominance) Upper four curves indicate selection by upper truncation, lower four selection bylowertruncation. . . . . . . . . . . . . . . Mean genetic progress at three levels of selection when bk -0. 4 (complete dominance) Upper four curves indicate selection by upper truncation, lower four selection bylowertruncation. . . . . . . . . . . . . . . Page 121 122 123 124 125 133 134 Figure 8.3 M cr‘r-‘P-ezn Figure Page 8. 3 Mean genetic progress at three levels of selection when 1132-0. 7 (complete dominance) Upper four curves indicate selection by upper truncation, lower four selection bylowertruncation............... 135 xi "There is no more common error than to assume that, because prolonged and accurate mathematical calculations have been made, the application of the result to some fact of nature is absolutely certain. " A. N. WHITEHEAD Th the eff knowle genetic of the ; reapon measux maxim 10 the . and to corre] T} Corre dram as to OVer or w} 8316c in I‘e Phen INTRODUCTION The improvement of economic traits in livestock depends upon the effective use of genetic variation. Pertinent to this is a knowledge of the relationships among the traits including the genetic and environmental correlations among them. Knowledge of the genetic correlation among traits is necessary to predict the response to selection of traits not directly selected and to combine measurements on different traits in selection indexes to secure maximum improvement. Predictions of this type are valid only to the degree that the estimate of the genetic correlation is valid and to the extent that selection itself does not modify the genetic correlations . There has not been enough study of genetic correlation and correlated response to selection to allow conclusions to be drawn about their behaviour under selection for questions such as to what extent the correlation can be changed by selection, over how many generations the correlated reSponses continue, or what is the total correlated response when the limit of selection is reached. The introduction and rapid development of Monte Car lo methods in recent years has provided a tool for the study of population phenomena in a more detailed manner than has been possible with 1 2 either the techniques of mathematical genetics or laboratory studies with biological populations. The concepts underlying the use of Monte Carlo techniques , the use of some mechanical device to create simulated observations, are not new and may be considered as old as probability and statistics. The Monte Carlo method came into use during the 1940's to identify statistical procedures for Obtaining numerical estimates for problems in nuclear physics. With the introduction of high speed computers, interest in the theory and application of Monte Carlo techniques greatly increased. The applicability of Monte Carlo procedures to quantitative genetics arises from inheritance having a relatively simple probabilistic basis , and Monte Carlo methods involve the simulation of probabilistic mechanisms. Thus, through intelligent simulation of these basic genetic mechanisms , additional insights into their consequences for various situations becomes possible. Yet, it should be stressed that the simulation has to be based on our present theory of biometrical genetics and the results Obtained can only be studied in the light of existing theory. The procedures cannot be expected to increase our knowledge of the basic, mechanisms themselves. The major contribution may well be to emphasize and clarify points which should have been recognized 3 previously but which have been overlooked or considered less important than they should have been. This investigation was to examine the effects of the intensity of selection and the environmental variation upon the behaviour of the genetic correlation and upon the correlated response of traits not selected to selection. REVIEW OF LITERATURE A change in other traits not under selection when traits under selection are modified has been observed for some time. The statement by Darwin (1875) indicates that he had noted the importance of correlated variation: "Hence, if man goes on selecting, and thus augmenting, any peculiarity, he will almost certainly modify unintentionally other parts of the structure , owing to the mysterious laws of correlation. " In the study of such correlated response the genetic correlation between the traits plays an important role in determining their pattern under selection. The most important underlying cause of genetic correlation appears to be pleiotropy, a gene affects two or more traits, the segregating gene causes simultaneous variation in the traits it affects. Other possible causes of genetic correlation are usually considered to be minor or transient. For example, according to Lush (1948), linkage can be an important cause only in a p0pulation where either the coupling or repulsion phase of the double heterozygote is far more abundant than the other. Such a condition would persist for only a few generations after a cross because in a freely interbreeding p0pulation, the coupling 4 5 and repulsion phases of the double heterozygote tend rapidly to become equally frequent. For a second example, Lush suggests that an apparent genetic correlation could be caused by different intensities or different directions of selection in non-interbreeding sub-groups of a p0pulation. If the whole population were studied as a unit without regard to the sub-groups, the differences between groups could create a genetic correlation in the population, although there would be no genetic correlation within each sub-group considered separately. The quantitative aspects of genetic correlation were presented by Hazel (1943), who developed a statistical technique to estimate genetic correlation based upon the fundamental formulations of biometrical genetics of Fisher and Wright. The technique of estimation was based on the resemblance between relatives similar to the method used in the estimation of heritability. However, instead of the components of variance of one trait, the components of covariance of the two traits were computed. In general, the more closely the animals are related, the smaller should be the sampling error of the estimate. Sufficient care is needed to avoid correlated environments of the individuals .concerned. Estimates of genetic correlations obtained by covariancebetween relatives have not been precise, however, and are usually subject to rather large sampling errors. Reeve (1955) presented a method to estimate the sampling variance of the genetic correlation coefficient between two traits in large samples where the correlation is estimated from the four parent-offspring covariances for the two traits. The variance was expressed in terms of the heritabilities, genetic and phenotypic correlations between the two traits. The variance was the same whether the arithmetic mean or the geometric mean of the covariances involving both characters was used in calculating the genetic correlation. Robertson (1959) develOped a measure of the sampling variance where the genetic correlation is estimated from variance and covariance components for the two traits within and between groups of relatives. He presented formulae for the Special case in which the two traits havelthe same heritability. Since the standard errors of the two heritabilities appear in the formulae, an experiment designed to minimize the sampling variance of an estimate of heritability should also have the optimum structure for the estimation of a genetic correlation. An attempt was made to suggest the form of the more general solution where the two traits have different heritabilities. Using a different approach, Tallis (1959) presented a general solution which reduced to that presented by Robertson when the 7 two traits have equal heritabilities. The formula develOped by Tallis holds for estimating the sampling variance of a genetic correlation estimated from an analysis of variance and covariance provided the estimate of heritability of neither trait is zero and the number of offspring per sire is constant. A general solution has also been described by Mode and Robinson (1959) for genetic correlations estimated from components of variance in a random model with equal sub-class numbers nested four ways. Van Vleck and Henderson (1961) presented a procedure for obtaining empirical sampling estimates of genetic correlations obtained from parent-offspring analysis. Sampling variances of these estimates were then compared with the theoretical variances derived by Reeve (1955). They found that for sample sizes of 1,000 or more, the approximate formulae of Reeve for the variance in, large samples agreed. For smaller sample sizes (500 or less) the approximations were not close unless the heritabilities of the traits were high. In fact, when the sample size was 100 or less, the approximations were very misleading. Van Vleck and Henderson concluded that for estimating genetic correlations, at least 1,000 sets of observations are needed to obtain reasonable estimates of the sampling variance. Even then the sampling variances may be too large for the estimates to be of use, especially if heritabilities of the traits are low. Heritability 8 plays a dominant role in determining the sampling variances of estimates of genetic correlation. Scheinberg (1966) showed the approach suggested by Tallis (1955) could be generalized to estimate the sampling variance of the environmental and phenotypic correlation coefficients as well as that of the genetic correlation coefficient estimated from analysis of variance and covariance. A general formula was developed for the estimated variance of the correlation coefficient from which the sampling variance of any one of the three correlation coefficients could be easily obtained by proper substitution for two sample variables. These preliminary discussions indicate that mOst estimates 'of genetic correlation in economic traits are of doubtful reliability and, moreover, that present methods of estimating the sampling variance of the coefficient are also of questionable value except under special circumstances. Selection applied to one trait generally results in correlated changes in other traits not under selection. This "correlated response" depends primarily upon the genetic correlation. Yet there has been little research reported on whether the theoretical treatment of correlated response to selection in terms of the genetic correlation is adequate to explain the responses realized in experimental results. 9 Falconer (1954) reported an experiment with mice in which two-way selection under different environmental conditions was for body weight at six weeks of age in one pair of lines and for tail length in another pair. The test of adequacy of theory came from a comparison of independent estimates from each pair of lines of the genetic correlation between body weight and tail length. Agreement between the estimates was expected to show that the theory upon which the estimation of genetic correlation is based would account fully for the correlated responses observed in the experiment. Falconer found reasonable agreement between the two estimates but concluded that the closeness of the agreement should not be emphasized since the estimates had rather wide fiducial limits. Reeve and Robertson (1953) selected for wing and thorax length in Drosgahila melanogaster and found good agreement between the estimates of the genetic correlation in the base population and the correlated responses obtained when either of the two was selected separately. Their results were based upon fifty generations of selection. The genetic correlation between the two traits was high, however, (0.70), and there is some suggestion, (Clayton EL, 1957) , that the magnitude of the genetic correlation affects the accuracy of the predicted response, accidents of genetic sampling 10 in the correlated trait making the response unpredictable at low levels of genetic correlation. Clayton e_t_a_l. (1957), in the third of three papers devoted to an experimental check on quantitative genetic theory, also studied correlated response in Drosophila melanogaster. In their study the genetic correlation between the primary trait (abdominal bristle number) and the secondary trait (sternopleural bristle number) was small although positive (0. 05 to 0. 10) in the base population. Moderate agreement with predicted correlated response was observed in the early generations while inbreeding was quite low. The correlated response became entirely unpredictable with further selection in later generations. These workers concluded that if the genetic correlation is low, to measure it by correlated response is unwise unless the inbreeding each generation can be kept at a very low level; and that careful experimental design is required to estimate genetic correlations from correlated responses. Very little is as yet known about the effects of selection on the magnitude of the genetic correlation. Lerner (1958) presented a simple theoretical model suggesting that the genetic correlation between two traits would eventually become negative if selection were applied to both traits simultaneously. Those alleles which affect one eventually alleles hat eliminated segregatin two traits, Lush (194:: effects of While . investigati Friars e: g€netic CO for improx °°rrelatio danger of population out of the of thes e w but [1011.81 Provided t nine Year 51 led the am t°WardIIn ll affect one trait alone or both traits in a plus direction would eventually become fixed under selection for both traits while those alleles having a negative effect on one or both traits would be eliminated. The net result of selection would be to leave segregating only those alleles which have Opposite effects on the two traits, thus, resulting in a negative genetic correlation. Lush (1948) makes essentially the same point when discussing the effects of selection on genetic correlation. While this theory seems sound, there have been few experimental investigations to study the effects of selection on genetic correlations. Friars e_1_:_a_l; (1962) reported changes over time in estimates of genetic correlations between traits under simultaneous selection for improvement in poultry. Trends in the magnitude of genetic correlations over years within the same population pointed out the danger of comparing estimates of genetic correlation from one pOpulation to another. Negative time trends occurred in sixteen out of the eighteen sets of genetic correlations estimated and six of these were significant. The remaining two sets showed positive but non-significant time trends. Fairly good evidence was thus provided that the genetic correlations were declining over the nine years of this study. The consistency of the negative trends led the authors to conclude that selection rather than progress toward linkage equilibrium was probably the cause. They suggested that the a decrease theory pl While quantitati genetic c to the the variable - coefficier With ref e admissim score Obt all indivh rejection; usually a“ Clearly t} t1”llllcated those Sco: that Such scores on “the two the truhce °rigina1 p 12 that the additive portion of the genetic covariance could have decreased through selection which would lend support to the theory proposed by Lerner (1958). While there is limited experimental evidence in the field of quantitative genetics concerning the effect of selection on the genetic correlation, some attention has been paid in other areas to the theoretical consequences of truncation selection of one variable in a bivariate normal distribution upon the correlation coefficient. Aitken (1964) presented a treatment of the problem with reference to testing procedures used in determining admission to educational institutions. One variable was the score obtained in admission tests, which were administered to all individuals in the population to decide on admission or rejection; the other variable was score on achievement test, usually administered at a later date only to those admitted. Clearly the distribution of scores on admission tests had been truncated prior to administering the achievement test since only those scoring high in the former were admitted. Aitken suggested that such truncation will change the marginal distribution of the scores on achievement tests except in the case of independence of the two variables. The correlation between test scores in the truncated portion of the p0pulation will differ from that in the original population depending upon the degree of truncation exerted. in the um truncated degrees c portion. somewha' argument in biologi Mante Similar ti betWeen t Performa aCtUally ( Candidate Again a r general P the restr varianee in the 1111: correlati ammon ”Man. 13 exerted. A method was presented to determine the correlation in the underlying pOpulation from the correlation observed in the truncated distribution, and values were tabulated for various degrees of truncation and levels of correlation in the truncated portion. While this treatment was applied to a phenomenon somewhat divorced from genetic correlation, similar theoretical arguments would apply to truncated selection for a single trait in biological pOpulations. Mantel (1966) also discussed the problem from a standpoint similar to that of Aitken, again using the example of the correlation between tests to determine admittance to a school and subsequent performance. It was stressed that the correlation which is actually observed is that within the papulation of successful candidates rather than within the population of all candidates. Again a method is described whereby the correlation in the general pOpulation can be ascertained from the correlation within the restricted population. All that is required is the ratio of the variance of the truncated variable in the restricted portion to that in the unrestricted pOpulation. Conversely, the expected correlation in the restricted portion, .caused by truncation . selection, can be determined if the correlation in the unselected papulation is known. Both A‘ restricted in the unre the problei selection, exPected tc selected pc grout) is m change Can estimeted involved, traits in th Selected g1 0f indiyidu rePeated f. “uremic of seleCtic PractisEd. have uPOn Anothe correlate< °°rrelate, 14 Both Aitken and Mantel indicated that the correlation in the restricted portion will be considerably weaker than that observed in the unrestricted population. If these findings are related to the problem of genetic correlation in animal populations under selection, linear truncation selection of one trait could be expected to cause a decrease in the genetic correlation in the selected portion of the population. However, when this selected group is mated to produce the next generation of individuals , what change can be expected in the genetic correlation when it is estimated in this new generation? There are three correlations involved. Firstly, there is the genetic correlation between the traits in the initial population; secondly, the correlation in the selected group; and finally, the correlation in the new generation of individuals produced by this selected group. This cycle is repeated for each generation of selection. The magnitude of the correlation in any population or sample will depend on the stage of selection and probably also on the type of selection being practised. The nature of this effect that selection is likely to have upon the genetic correlation has not become entirely clear. Another problem associated with genetic correlation and correlated response to selection is that of "asymmetrical correlated response", discordance of the pattern of correlated response with expectation. For example, the same pattern of response i when selec reSponse i comparabl selected. frequently Falcon 10W planes under two traits. Ge generation Falconer e Parameter ASYmr by Ben an selectiOn ! different a responSe i selectiOn ‘ Poultry 0v selected 1' weight in ' genetic co 15 response in the correlated trait might reasonably be expected when selection is made in opposite directions. Also, the response in one trait on selection for the other should be comparable regardless of which of the correlated traits is selected. These expectations of correlated response have frequently failed to develop in experimental data, however. Falconer (1960) selected mice for growth rate on high and low planes of nutrition where the same measurements made . under two different environments were considered two separate traits. Genetic correlations observed were equal in early generations but were markedly different in later generations. Falconer attributed this asymmetry to changes in the basic parameters due to selection applied. Asymmetry of genetic correlations also has been observed by Bell and McNary (1963) and by Yamada and Bell (1963) when selection was applied to Tribolium castaneum under two different environments. Siegel (1962) also found asymmetrical response as measured by realized genetic correlation when selection was made for body weight and for breast angle in poultry over four generations. Nordskog and Festing (1962) selected in both high and low directions for body weight and egg weight in poultry and observed asymmetry of the realized genetic correlations between body weight and egg weight when either the ' was consici the asymni metwotra ClaytOi observed a in Dr050pl and decrea increase ll Perceptibll 0V6!“ twent Phyanine gehetic C0 The fr have been Other than Bohren 6t \ COrrelatECI 611% using results 0h| cOrrelatet authors I 16 either the direction of selection or the trait being selected was considered. Siegel and Nordskog and Festing attributed the asymmetry to differing genetic variances or heritabilities for the two traits. Clayton §_1:__a_._l. (1957) ,in their paper on correlated response, observed asymmetry in response of sternopleural bristle number in Drosophila melanogaster when selection was made for increased and decreased abdominal bristle number. They found a marked increase in sternopleural bristles in all the high lines but no perceptible change in the low lines when selection was continued over twenty generations. They concluded that genetic drift may play an important part in the correlated response when the genetic correlation is low. The frequency with which asymmetrical correlated responses have been found does suggest, however, that some mechanism other than genetic sampling is affecting correlated response. Bohren£t_a_l_. (1966) made a detailed study of asymmetric correlated response to selection using algebraic methods and also using a computer to simulate selection experiments. The results obtained by both methods indicated that asymmetry of correlated response is to be found quite frequently. In fact, the authors suggest that to find symmetry in an experiment might be more an programme generation in genetic \ proceeded. of gene eff contributio negatively . other than 0f correlat POSSible wj 0f the gene Prediction than for th °fcorre1at pal'ameter The pa included a] l‘es‘POI‘ise t been Consi quantitativ 17 be more surprising than asymmetry. The computer was programmed to calculate the change in gene frequency from generation to generation, and from this the expected changes in genetic variances and covariance were calculated as selection proceeded. The procedure was carried out with several models of gene effects and gene frequencies. Probably the most frequent contribution to asymmetry in practice will be from loci contributing negatively to the genetic covariance and having gene frequencies other than 0. 5. The authors suggest that accurate prediction of correlated response to selection over many generations is not possible without prior knowledge of the composition and magnitude of the genetic covariance. The validity of existing theory for the prediction of correlated responses is likely to be much poorer than for the prediction of direct responses. Indeed, predictions of correlated response probably should be based on the genetic parameters estimated each generation. The paper by Bohren fl. is of special interest because it included an investigation of genetic correlation and correlated response utilizing Monte Carlo techniques. There has, of course, been considerable investigation of various aspects of genetic theory by the Monte Carlo method since its introduction to quantitative genetics by Fraser (1957). Fraser I simulate gel genotypes al offlm genet aho explai] mdmrfim effects, se, In a fu: prOgress UI hnkage, 5, P3P“ were PTOVision b r: 0.5 to Complete 1i effect on tt. recombinat seven and t complete d this first p Barker SYStEmS Us (1957.). It 18 Fraser (1957a) discussed the use of a digital computer to simulate genetic processes and the binary representation of genotypes and the use of logical algebra to allow the identification of the genetic nature of an individual at each locus. The author also explained methods for the determination of phenotypic value and for the simulation of inter-locus interactions, environmental effects, segregation and selection. In a further paper, Fraser (1957b) reported on the rates of progress under varying intensities of selection and tightness of linkage. Several of the methods discussed in the introductory paper were used to simulate a genetic system of six loci, with provision being made to vary the recombination between loci from r = 0. 5 to r = 0. O, that is, from independent assortment to complete linkage. Linkage was shown to produce no qualitative effect on the rates of advance at values greater than 0. 5 per cent recombination. The limitation of the number of loci to less than seven and the lack of provision for dominance relations other than complete dominance were considered to be the major defects of this first program. Barker (l958a,b) continued the study of simulated genetic systems using basically the same method as described by Fraser (1957a). In the first paper, selection between two autosomal alleles at four sta was tested had been r selection b third chro: agreement the second Dr050phila show clear locus was Fraser in a furthe and discus The consid (Fraser 1 leation at °Perate in gellOtype u The last p; “the prev ”product, Selection a 19 at four stages of the life cycle was simulated, and the program was tested by simulating two experiments with Drosophila which had been reported previously in the literature. The first of these, selection between ST and CH chromosomal arrangements on the third chromosome of Dr030philapseudoobscura, provided close agreement between the simulated and experimental results, while the second experiment, selection between wild type and glass in Drosophila melanogaster, did not. Nevertheless, the study did show clearly that selection between two alleles at an autosomal locus was possible with automatic digital computers. Fraser (1960a) continued the discussion of Monte Carlo methods in a further paper in which he re-emphasized the procedures used and discussed the effects of linkage, dominance, and epistasis. The consideration of epistasis was continued in yet another paper, (Fraser 1960b) where he showed that while selection will lead to fixation at a slow rate in a simple additive genetic system, it will operate in complex epistatic systems to modify the relation of genotype to phenotype, the relationship becoming a sigmoid function. The last paper of the series (Fraser, 1960c) was a direct extension of the previous paper on epistasis and considered the effects of reproductive rate and intensity of selection on geneticstructure. Selection against phenotypic extremes can producea degree of genetic canalization which is more restrictive than that indicated by the limit degree can These 2 the groundv in the field important t models can short time, before CXPE Sl’dney seri investigatic from the p1 "Monte Car Martin P I a Study dES prOgreSS 0 Testing ind seleCtion and Can re cases 1653 Baker and select; those in P0 20 by the limits of selection, showing that canalization of a rigid degree can be caused by loose selection. These seven papers made a valuable contribution by providing the groundwork for the develOpment of the Monte Carlo method in the field of quantitative genetics. This method furnishes an important tool, readily available to the experimenter. Genetic models can be devised, programmed, and tested in a comparatively short time, permitting the examination of theoretical consequences before experiments with biological organisms are planned. The Sydney series of papers provided the impetus for a number of investigations in the United States during the early 1960's, mostly from the project supported by the National Science Foundation, "Monte Carlo Studies of Genetic Selection," at Iowa State University. Martin and Cockerham (1960) applied Monte Carlo techniques in a study designed primarily to explore the effects of linkage on the progress of small populations evolving under mass selection. The results indicated that tight linkage can slow down progress from selection when the populations are initially in linkage equilibrium and can result in the fixation of some unfavorable alleles. In some cases less intense selection can lead to more progress. Baker and Comstock (1961) , on the other hand, found that linkage and selection produced genetic means which were just as high as those in populations where selection was practised with no linkage, at the 5am on the effe< the differs: simulation Quresh effects of f All possibl linkage, 5 Simulated, geDOIYPic 21 at the same level of environmental variance. These two papers on the effects of linkage on genetic progress in finite populations under selection did not agree entirely on the significance of low recombination values in retarding genetic advance, although the differences could be due in part to differing parameters and simulation procedures. Qureshi (1963) reported a Monte Carlo study to explore the effects of finite population size and linkage on response to selection. All possible combinations of three levels each of population size, linkage, selection intensity, and environmental variance were simulated. The report considered changes in the genotypic mean, genotypic variance, and number of loci fixed for each of thirty generations for additive gene action only. The initial response to selection with no linkage conformed closely to predicted values , and the size of the papulation affected the rate of response strongly at low intensities of selection. The effects of population size were also appreciable at high intensities of selection when linkage was present, linkage interacting with selection in rate of reaponse when population size was large. The number of generations required to reach the limit generally increased with linkage since the genotypic variance was being conserved and the response was slowed down. In general, delayed response due to moderate linkage was accompanied by a lowering of the total genetic advance. Little evidence was found that generatior In a 81 of the effe to mass 3 conditions of the de 0f the hor genes and generatio Populatioi Caused a mOderate entire 1y 0 °Verdomi aplmenti the rate . selectiOU 30 getter size Was genel‘al’ to the ef; gene act 22 found that higher limits were attained when the number of generations to fixation was increased with linkage. In a subsequent report (Qureshi 1964) the investigation of the effects of finite p0pulation size and linkage on the response to mass selection was continued for dominance. Two special conditions of dominance were considered, complete dominance of the desired gene and overdominance when the genotypic value of the homozygotes is equal. In complete dominance of desired genes and with initial gene frequency of 0. 5, response over ' generations was negative under tight linkage except when the papulation size was as large as 64. Intense selection apparently caused a positive response in small p0pulations only under moderate linkage. The fixation of undesirable genes was almost entirely due to population size and linkage. In the case of overdominance, the total response over 30 generations was also apparently due entirely to population size and linkage although the rate of response was evidently affected by intensity of selection. The predicted plateau in the genotypic mean over the 30 generations was observed in overdominance when p0pulation size was large and recombinations among loci was high. In general, the effect of selection intensity appeared to be additive to the effects of papulation size and linkage under both models of gene action. A strong interaction between papulation size and linkage we and fixatic Gill in population —_—__-—_ variation 1 addition, I three stan overdomii‘ Four level leVEIS res 0. 50, and Were Simu nine mode . l bemg deri replicatioi POPUIation Variatmn. I each Parai EEneratiOr In the finite ‘ POPL The {Om i Under the I 23 linkage was consistent with respect to both response to selection and fixation of loci. Gill in 1965 presented a series of papers on the effect of pOpulation size, linkage, selection intensity, and environmental variation upon genetic change in simulated populations. In addition, nine different models of gene action were considered, three standard non-epistatic models, additive, dominance, and overdominance, together with six different epistatic models. Four levels of environmental variation were simulated. These levels resulted in heritabilities, in the broad sense, of l. 0, 0. 75, 0. 50, and 0. 25 in the initial generation of progeny. Populations were simulated for each of 16 runs associated with each of the nine models of gene action, the content of each parameter set being derived from the orthogonal array of a 1/16 fractional replication of a 44 factorial design. The four factors were population size, linkage, selection intensity and environmental variation. Selection was by upper truncation of phenotypes , and each parameter set was continued over 30 non-overlapping generations or until fixation occurred at all loci. In the first paper of the series (Gill 1965a), the effects of finite population size on advance from selection were considered. The four population sizes simulated were 8, 12, 16, and 32 parents. Under the conditions of complete dominance, the critical size of a simulat extinction of while pOpulaI loss of allel total p0pulat size on the 1 of selection, of variation I 01' both. In I theory, In a SCCC in his simul ngress wh f°rmulation infinite Popll C0nform We; of ”Stricteg generaIlOns Widenh Whe selection 80 considerablé The authol. ( 24 of a simulated population with respect to prevention of random extinction of desired alleles was between 16 and 32 individuals , while pOpulations of 30 or more were needed to prevent random loss of alleles when overdominance existed and 1/8 or more of the total population was selected as parents. The effect of population size on the mean was of major importance, relative to the force of selection, only in populations possessing considerable amounts of variation due to dominance effects, their epistatic interactions, or both. In general, the results conformed rather well to existing theory. In a second paper, Gill (1965b) discussed the results obtained in his simulated populations in comparison with hypothetical progress which could be predicted utilizing the mathematical formulation derived by Griffing (1960). Predictions based on infinite population size, one of Griffing's assumptions, did not conform well with realized response in more realistic populations of restricted size. The futility of predicting for more than a few generations without a re-evaluation of genetic parameters was evident, whether predictions were linear or asymptotic to the selection goal. Random genetic drift, as well as selection, had considerable influence in changing parameter values rather quickly. The author did stress, however, that the rate and magnitude of change obse observed in Gill (19¢: effects of in of finite pOp selection in‘ | 91089“ PO? sizes of pa! ranging fro: population I 1. 65 standa unselected of 0.005, 0 each chrow for all adja run. In the f3Ci0rs s an allEles OCC 011 lOtal reg as intense genetic me Intrit Was drift Could 25 change observed in natural populations may differ from that observed in simulated p0pulations. Gill (1965c) in the third paper of the series considered the effects of intensity of selection and linkage on the genetic progress of finite populations under each of the nine genetic models. The selection intensities specified were 1/2, 1/4, 1/6, and 1/8 of the progeny populations. These, when combined with the four specified sizes of parent populations, determined progeny p0pulation sizes ranging from 16 to 256 in number and corresponded to selected population means which were expected to be 0. 8, l. 27, 1. 5, and l. 65 standard deviations, reSpectively, above the mean of the unselected pOpulation. To simulate linkage, recombination values of 0. 005, 0.05, 0. 2, and 0. 5 were applied to the adjacent loci on each chromosome, with the probability of crossover being uniform for all adjacent pairs of loci on the same chromosome for a given run. In the populations with complete dominance, complementary factors, and duplicate factors, little or no fixation of undesirable alleles occurred at any level of selection, suggesting that the effect on total response to selection should be small even with selection as intense as 1/6. Selection was effective in advancing the genetic mean in those populations in which the genotype of highest merit was homozygous even in small populations where random drift could be expected to cause fixation of some undesirable recessive were opti against tl The d genetic n' pupulatio In p0pula‘ addition t genotypic generatio linkage (1 however, Was Cons disequill} YOUng genetic a large po Unselect, correspo Per Cent trait und each 10c 26 recessives. In small pOpulations where heterozygous genotypes were Optimum, however, selection was evidently rather ineffective against the opposing pressure of random genetic drift. The different levels of linkage simulated had little effect upon genetic merit, gene frequency, or fixation even in the smallest p0pulations, except during the first few generations of selection. In populations selected for intermediates , linkage disequilibrium in addition to inbreeding appeared to bias estimates of components of genotypic variance - probably the dominance portion - for many generations , selection for the heterozygote evidently maintaining linkage disequilibrium. Under conditions of complete dominance, however, bias in the estimation of components of genotypic variance was considered to be due to inbreeding rather than to linkage disequilibrium. Young (1966) has also used a high-speed computer to simulate genetic advance in p0pulations under selection. In this study were large populations of 1,000 individuals per generation in each unselected pOpulation. Three intensities of selection were used corresponding to selection as parents of the best 80, 50, and 10 per cent of the individuals of each sex from each generation. The trait under selection was controlled by ten loci with two alleles at each locus, the initial gene frequency being 0. 5 for each allele at each locus In addition, t in the "narrc 0.5, 0.2, an recombinatic complete dox was under se the first of u gene action \ Under th aldvances am estimated in Prediction 0 Selection int Under th overestimat and underes IEIEEmem V decline in a, selection We The effect 0 27 at each locus and the initial population in linkage equilibrium. In addition, three heritabilities , 0. l, 0.4, and 0. 9, measured in the "narrow sense" and three probabilities of recombination, 0. 5, 0.2, and 0. 05 were simulated, the ten loci forming a single recombination unit. Two models of gene action, additive and complete dominance, were discussed, and each parameter set was under selection for 30 generations. The paper is evidently the first of what will be a series and results from other models of gene action will be presented in later communications. Under the additive model, agreements between the realized advances and the expected advances predicted from parameters estimated in each generation were in most cases very close. Prediction of genetic advances was slightly less accurate when high selection intensity was applied to lowly heritable traits. Under the dominance model, predictions were less accurate, overestimating genetic advance when selection pressure was high and underestimating it when selection pressure was low, although agreement was fairly close under low selection pressure. The decline in additive genetic variance was rapid in both models when selection was intense and particularly at high levels of heritability. The effect of linkage on this decline was small although tight linkage tended to accelerate the decline in the additive model during the initial generations but had the Opposite effect in later generations. 28 Linkage apparently had no appreciable effect on genetic advance in these large pOpulations, and no fixation of undesirable alleles was found even at high intensities of selection, again probably due to the large size of the pOpulations simulated. A genetic model for correlated reSponses has been described by Bohren e_:_t_a_i_l_. (1966) in a paper previously discussed in this review. Expected values of these correlated responses were obtained for each of nine generations of selection. Four different types of loci, A,B,C, and D were considered in the model, gene effects being additive in each case. Locus A affected the first trait only, having no effect on the second, while locus D affected the second trait only. Loci B and C affected both traits, the former making a positive contribution to the covariance, that is, affecting both traits in the same direction; and the latter making a negative contribution to the covariance. The computer was programmed to obtain the expected gene frequency at each locus for each generation. The new gene frequencies were then used to calculate the genetic covariance, the genetic and phenotypic variances, the mean of each trait, and the standardized correlated response for each generation when selection was on either of the two traits. Environmental variance was set equal to the genetic variance in all runs when all gene frequencies were one-half, giving initial heritabilities of both traits close to one-half in every case. The! ofgene effe: The pur; to asymmet: the relative positively 3.1 selected, wi practice prc covariance ; The for considerablv highlights tl correlation1 the depends 0f the liter 5 basic Simpl an approac} resPOnse , Whflethe tr I a new aveni omerinVes situatmn. 29 case. The entire procedure was carried out for several models Of gene effects. The purpose Of the investigation was tO study conditions leading to asymmetric correlated responses. Asymmetry resulted when the relative change in gene frequency at the loci contributing positively and negatively to the covariance depended on the trait selected, with the most frequent contribution to asymmetry in practice probably coming from loci contributing negatively to the covariance and having frequencies other than 0. 5. The foregoing review, while indicating that there has been considerable discussion Of and interest in genetic correlation, highlights the paucity Of reliable information on the nature of the correlation, its behaviour under selection, and the behaviour Of the dependent and important correlated response. An examination Of the literature on the development Of Monte Carlo methods in quantitative genetics research leads to the conclusion that the basic simplicity and applicability Of the techniques might provide an approach to the problem Of the effects Of selection on correlated response. Despite the shortcomings Of the simulation method and while the true situation might still remain undiscovered, at least a new avenue, might be Opened tO the problem which could prod other investigators to seek alternative pathways tO clarify the situation. The Experir, The ma): of degree of trait upon th correlated r selection. 1 combinatiOn numerous 11*; different 1m, Correlation 0f self3Cti0n of traits 0011 and Cost. hO arbitrary nu by the inVes hopefully, 1) most fruitfu The fact invesfigatio of each whll bounds . are METHODS AND PROCEDURE The Experimental Design and Parameters Simulated. The major Objective Of this study was to investigate the effects Of degree Of heritability and Of truncation selection Of a primary trait upon the behaviour Of the genetic correlation and the correlated response in a secondary trait in populations under selection. A completely comprehensive study could embrace all combinations Of a large number Of different factors, including numerous models Of gene action, interaction, and correlation; different levels Of environmental variation, genotype-environment correlation and interaction; and various methods and intensities Of selection for one or both traits under consideration. The number of traits could also be increased beyond two. Consideration Of time and cost, however, quickly limits the size Of any such study tO an arbitrary number Of factors and levels thought to be most important by the investigator. The results Obtained in this initial study should, hOpefully, prod the researcher in the direction Of the potentially most fruitful avenues Of inquiry to be explored in later research. The factors most important for the purposes Of the present investigation and the levels allowing for a wide range Of effects Of each while containing the size Of the experiment within reasonable bounds, are given below. 30 by inf: res ii. iii. the iv, the 31 i. Two quantitative traits X and Y with direct selection by upper or lower truncation on the phenotype Of the individual, for X alone. Y is not selected, but correlated response is Observed. ii. Three degrees Of genetic correlation, 0.25, 0. 50, and 0. 75, between X and Y in the initial generation Of Offspring. iii. Three levels Of selection, 20, 50, and 80 per cent Of the Offspring each generation. iv. Three levels Of environmental variance, V(E), for X and Y, relative to the expected additive genetic variance in the initial generation Of Offspring, V(Ca). The _ weal _ V(Ga)+V(E) was equal to 0.1, 0.4, or 0.7. When all Of the genetic levels were chosen in such a way that h' variance is additive, h' is a measure Of heritability in the "narrow" sense. When genetic variance other than additive is present, h' will be greater than heritability in the "narrow" sense. The four factors, genetic correlation, intensity Of selection for X, and environmental variation Of X and Y, each at three levels, were considered in all combinations , and each treatment combination or parameter set was replicated. These factors and levels provided 81 treatment combinations in a 34 factorial experiment which, when replicated, resulted in 162 parameter sets. The factors 32 and levels simulated are shown below where b is the fraction of the offspring becoming parents each generation, rG is the genetic correlation between the two traits in the first generation of offSpring, and h'x and h'y represent the levels of environmental variation of X and Y, respectively: LEVELS 11. 1 2 b 0.80 0.50 0.20 rG 0.25 0.50 0.75 FACTOR bk; 0.10 0.40 0.70 by 0.10 0.40 0.70 The experiment was conducted separately for each of the following two models of gene action: a) Additive model in which the contributions to the genotypic value were 2, 1, and 0 for the-0+, + -, and -- phases, respectively, at each locus. Selection was for the desirable allele. b) Model of complete dominance in which the contri- butions to the genotypic value were 2, Z, and 0 for the +1., +-, and -- phases, reapectively, at each locus. In this case selection was in both directions, upwards for the dominant allele and downwards for the recessive allele. These models provided three separate experiments resulting in a tnta The Strii Speci carries u importam The p! the two Q"- Since the 1 parents ra 0f Parents combinatic And 24 {BIT} Parents Wa PTOVide lexy ineach gen prOduced El intensity Wa The with replace sex of Whic} i .01‘ the p05 9 in any gene, and {Ema 1e 33 in a total of 3 x 162 or 486 parameter sets. The Structure of the Initial POpulation. Specification of the basic structure of the initial pOpulation carries with it necessary assumptions which are of sufficient importance to require discussion in some detail. The population in this study was the bisexual diploid type, and the two quantitative traits X and Y were expressed in both sexes. Since the size of the population was related to the number of parents rather than to the number of offspring produced, the number of parents was held constant each generation for all treatment combinations. The parents were limited to 48 individuals, 24 males and 24 females, and the number of offspring produced by these parents was determined by the selection intensity desired. To provide levels of b, the fraction saved, of 0. 80, 0. 50, and 0. 20 in each generation, 30, 48, and 120 male and female offspring were produced giving 60, 96 or 240 offspring each generation. Selection intensity was equal in the two sexes. The selected parents were mated at random by sampling with replacement, and each mating produced one offspring, the sex of which was specified alternately. This procedure allowed for the possibility of both full-sibs and half-sibs among the offspring in any generation. Sampling without replacement from both male and female parents could have been done and could have allowed for an equa an aqua for natu conforn Eacl provide generati an unnec The the aims With the loci cont W the st loci invo easill’ be The c DATA 36 With lax-g. and which Word in t} bits of da handling ( 34 an equal number of progeny from each selected parent. But, an equal number of progeny per parent is an idealized situation for natural finite populations and sampling with replacement conforms more closely to the situation in natural populations. Each parameter set was continued for 30 generations to provide sufficient Opportunity to observe a selection limit. The generations were non-overlapping, overlapping generations being an unnecessary additional complexity. The genetic structure of the base population has to vary with the aims of the investigation being conducted and, to some degree, with the peculiarities of the computer available. The number of loci controlling the genotype, for example, is likely to be limited by the storage capacity of the computer. Clearly the number of loci involved in most quantitative traits in farm animals could not easily be simulated. The computer system available for this study was the CONTROL DATA 3600, which is a general purpose digital computing system with large storage capacity and exceedingly fast data transmission and which is efficient in solving large scientific problems. Each word in the storage module has a 51 bit structure made up of 48 bits of data and three parity bits, thus allowing for the expedient handling of a 48 bit data word. Magnetic core storage of 32,768 of these 48 bit words is available. For these reasons the number of loci .' meant t represe Thus, fc individu. mpulatit No li consider at all 10c EEDe inte environm Set at 0. 5 heterozy; Changes 1" AS sta additive a. OI gene ac Symmetric genotl’pic 1 wh . m the QEnr 35 of loci affecting each of the two traits was specified as 48, which meant that two 48 bit words could be conveniently used to represent the genotype of each trait, simulating two chromosomes. Thus, four words were required to store the genotype of each individual, and 4 x 48 or 192 words were assigned to the parent population. No linkage was specified in the genetic structure; all loci were considered to be completely independent and the gene effects equal at all loci. Further restrictions were those of no inter-allelic gene interactions and no interaction between genotype and environment. Gene frequency at each locus was arbitrarily set at 0. 5 in the initial generation by simulating complete heterozygosity at each locus in the base population to allow for changes in gene frequencies in either direction. As stated previously, two different modes of gene action, additive and complete dominance, were simulated with the mode of gene action the same at all loci for a particular run. For the symmetrical additive model, where the contributions to the genotypic value at each locus were 2, l, and 0 for the++,+ -, and -- phases, respectively, the genotypic value for each trait was Zn1+nz where n1 is the number of++phases and n2 the number of+- phases in the genotype. With independent assortment and q the gene freqnenc genotypic was ant In this ca the expec were 48 a 1n the to the ger +-, and -. The exPe‘ (KEmptho resPemixn the first E reSPeCtiK-w Was made varianCe ( LeV'els I"native tC gEHEratiOt heritabilit additive m l EVEIS r831 36 frequency of the plus gene the same at all loci, the expected genotypic mean was an and the expected genotypic variance was 2nq(l-q) where n is the number of loci affecting the trait. In this case, with 48 loci affecting each trait and q equal to O. 5, the expected genotypic mean and variance in the initial generation were 48 and 24 respectively, under the additive scheme. In the model of complete dominance where the contributions to the genotypic value at each locus were 2, 2, and 0 for the++, +-, and -- phases, respectively, the genotypic value was 2(n1+nz) The expected genotypic mean and variance in the initial generation (Kempthorne, 1957) were then an (2-q) and 4n [2q(l-q)3+ q2(l-q)2] , respectively which resulted in an expected mean and variance in the first generation in the population simulated of 72 and 36, respectively, for each trait. With q- 0. 5 the genotypic variance was made up of additive genetic variance of 24 and dominance variance of 12. Levels of environmental variation were simulated relative to the expected additive genetic variance in the first generation of offspring to produce the desired degrees of heritability in the "narrow" sense of 0.1, 0. 4, and 0. 7 in the additive model. In the model of complete dominance these levels resulted in heritabilities of 0. 095, 0. 33, and 0. 52, respectively. The environmental component was assumed to be indepf’nd Hence, t was dete was a p!" unit vari: standard heritabili investigat 60, and 3‘ produce t} therefore, environme ”Ormal de' 1'equired P heritabilitx Order to a] lamb upot Siflee t parametEr 37 independent of the genotype and constant over generations. Hence, the phenotypic value of each trait in each individual was determined by adding xci to the genotypic value where x was a properly generated normal variate with zero mean and unit variance and Ci was a constant designating the environmental standard deviation required to produce the desired degree of heritability. For the three heritabilities simulated in this investigation, 0. l , 0. 4, and 0. 7, phenotypic variances of 240, 60, and 34. 3 were required. The constants, Ci' required to produce the environmental variances of 216, 36, and 10. 3 were, therefore, 14.697, 6.000, and 3.207, respectively. These environmental standard deviations multiplied by a random standard normal deviate and added to the genotypic value resulted in the required phenotypic variance to produce the desired degree of heritability in the initial generation in the additive model. In order to allow study of the effects of the different environmental levels upon the change in the genetic parameters simulated, no attempt was made thereafter to keep heritability constant over the thirty generations . Simulation of the Genetic Correlation. Since the genetic correlation was clearly the most important parameter simulated in this study, the method of simulation and 38 its justification will be discussed in some detail. That the cause of the genetic correlation was attributed solely to pleiotrOpy should be stressed. The degree of correlation arising from pleiotropic gene action expresses the extent to which the two traits under consideration are influenced by the same genes, and the resulting correlation is the overall effect of all the segregating genes that affect both traits. All of the genes affecting the two traits affected each one in the same direction, thus making a positive covariance. Other systems could have been simulated, some genes affecting one trait in one direction and the other trait in the Opposite direction making a negative contribution to the covariance and resulting in a genetic correlation which could vary from -1 to +1. Limitation of the size and scope of the present study prevented the simulation of negative genetic correlations or of zero correlations although these could be interesting parameters for later investigation. In this investigation the genetic correlation was determined by the number of loci which had an effect on both traits. As 48 loci affected each of the two traits, the number of these 48 which were shared by the two traits determined the degree of pleiotropy and of genetic correlation. To produce genetic correlations of 0. 25, 0. 50, and 0.75, the number of loci in common was set at 12, 24, and 36, respectively. The remaining loci of the 48 affecting 39 each trait affected each trait independently. The table below might illustrate the method more clearly: Loci A Loci B Loci A, Trait X + + 0 Trait Y 0 + + No. of Loci m n m' There were three different types of loci in the genetic system. Those in group A affected trait X only and had no effect on trait Y; those in group A' affected trait Y only and had no effect on trait X; those in group B affected both traits X and Y in the same direction, the magnitude of the effect being the same for both traits. The total number of 48 loci affecting each trait, was made up of n loci which affected both traits plus m or m' loci which affected only trait X or trait Y, reSpectively. Thus, when the genetic correlation was 0.25, n-12 and mum'u36; when the genetic correlation was 0. 50, n-24 and m-ml-24; and when the genetic correlation was 0. 75, n-36 and m-m'IIIZ. Clearly, if the number of loci affecting each trait were not the same, m would not be equal to m'. In this case, however, m was always equal to m'. The genetic correlation was then simulated simply as B. . The genotype of trait X, Gx, was determined by the n+m loci in groups A and B, and the genotype of trait Y, Gy, was 40 determined by the loci in groups A' and B. In this simulated population, Gx and CY were obtained in each generation for each individual. The genetic correlation was measured in each generation as the product - moment correlation between the genotypic values thus: IO = cov GxGY lthx) V(GYl where rG is the genetic correlation, cov GXGY is the covariance between the genotypic values, and V(GX) and V(Gy) are the variances of the genotypic values. For the additive case the genetic correlation as measured in this way is simply fi—m' or the ratio of the number of loci which the two traits share to the number of loci affecting each trait , as follows: GX a GA + GB and CY “GA. + GB since the loci are independent. - cov(GA+GB)(GA'+GB) ' ' r0 - JV(GA+GB) V(GA'+GB) covGAGA'+ covGAGB + covGBGA' + V(GB) vatGAl+VtGB)4-2cov GAGE] [V(GA')+V(GB)+2covGA'GB] But since all loci are independent and the effects are equal and additive at each locus, all covariances are expected to equal zero. 41 V(GB) - /[V(GA)+V(GB)] ENGA') +V(oB)] .I’G Under the assumptions of the model, these variances can be written in terms of the number of loci, gene (+ +)-(--) 2 at each locus. frequency (q), and the effect D - .°.rG _ 2nq(l 'qlDz , /t2mq( 1 'Q)D2+ 2nq( 1 -q)DZj[2m'q(l -q)Dz+2nq(l -q)D2] But, gene frequency and D are equal at all loci .JG a n ; J(n+m)(n+1n') and since m-m' in this case, n n+m .'.rc,- or the ratio of the number of loci affecting both traits to the total number of loci affecting each which was the method of simulating the genetic correlation. The genetic correlation was also measured each generation by the method proposed by Hazel (1943) utilizing covariances between phenotypes of parent and offspring. Two variations of Hazel's method were used to allow comparison of the accuracy of the methods. The two methods were: a) I; - (covapPyo).(covP:prxo) G (covapro) . (covapPyo) 42 b) s’G a (COVPXPPYO)+(covapro) ZMOVPXPPXO). (covapPyo) where Pxp - phenotypic value of trait X in the parent Pyp - H n u trait Y n n n Pxo - " " " trait X " " offspring Pyo I H H n trait Y n u it Both of these methods reduce to a measure of ~9— nm for the case of equal and additive effects , independence, and equal gene frequency at all loci. This is done as follows for method a) for example: Let pr — genotypic value for trait X in the parent Gyp - H H H trait Y H u n Gxo - " " " trait X " " offspring Gyo - H H H trait Y n n n and Exp =3 environmental contribution to trait X in the parent. Eyp :- environmental contribution to trait Y in the parent. Exo =- environmental contribution to trait X in the offspring. Eyo I- environmental contribution to trait Y in the offspring. 2 = (cov PxpPyo). (cov Pprxo) G (cov Pxpro). (cov Ppryo) H) [cov( pr+Exp) ( Gyo+Eyo) ] [ cov( gyp+Eyp) ( Gxo+Exo)] lcov(pr+Exp) (Gxo+Exo) ][ cov(Gyp+Eyp) (Gyo+Eyo)1 since all covariances between G and E are expected to equal zero. 43 = (COV prGyoHcov GypGxo) (cov prGxo)(cov GypGyo) =[Covchfi'GBptchio+GBo) ] [COViGAvp+GBp)(GAo*GBo) ] [cov(oAp+GBp)(GAo+ G30) ] [cov(GA,p+GBp)(GA.O+GBO)] and since all loci are independent _(cov GBpGBo) (cov GBBGBO) -(cov GApGAo +cov GBPGBOHCOV GA,pGA,O+cov *GBpGBo) GBpGBo/V(GBP)V(GBO) erBPGBOfimemeO) But rGBpGBo= WGAPGAO rGA'pGA'o = 1/2 and won) =- vao) and V(GAP) - V(GAO) - V(GA.p) -V(GA.01 .- 3%; V(GB) V(GB) [web ch) ][V(GA)+V(GB)] ...?G V(GB) V(GA) + woB) which in terms of n, the number of loci, gene frequency and D is equal to anU-qm2 2nq( l -q)D2 + 2mq( l -q)D2 n o o c o a .... Wthh again measures the genetic correlation as n+rn it was simulated due to pleiotropy. The same solution can be 44 obtained for method b) in which the arithmetic mean of the covariances is used in the numerator rather than the geometric mean, in computing the genetic correlation. The discussion above has explained the method of simulating the genetic correlation, the justification for this method, and has shown that the usual method of computing the genetic correlation in economic species is also theoretically an adequate measure of pleiotropy. The Mechanics of Simulation. In this section the logic of the program developed to simulate the population will be described. A detailed discussion of the structure and genetic properties of the population has already been presented as has a short description of the computer which was available for the study. A feature common to all types of investigation involving Monte Carlo methods is the use of pseudo-random numbers, which, although truly random only conceptually, have fulfilled as many criteria of randomness as possible. A library program, RANF, was available at Michigan State University for the generation of uniformly distributed pseudo-random numbers. Repeated use of RANF generates a uniformly distributed 45 sequence of random numbers in either fixed or floating point format. If floating point is used, the numbers range from 0 to less than 1. The random numbers are produced by the standard multiplicative congruential method. The derivation of the multiplicative method used is of the form Xi+ l—Xik (modm) where X is any odd number )\"'52 x 15 47 m—2 These parameters have been shown to satisfy the sufficient conditions for a sequence of maximal period. The period 45 for this generator is 2 in the computer which was used. Tests for accuracy, indicated by Rotenberg (1960), were performed and the results agreed very well with the theoretical distribution. The procedure was modified by Rotenberg (1960) to the form Xi + 1 .. (23 +1)xi+ C with a_>__2 and C odd. In the random number generator available a: was set equal to 10 and C equal to 101, making A-210+1 —1025 and Xi + l - 1025Xi +101 The method used has passed many tests of randomness including a test of the frequency distribution of the random 46 numbers , a test of the frequency with which a number of a certain magnitude was followed by a number of another certain magnitude, a test of the frequency distribution of the length of runs of numbers either above or below the mean, serial correlation tests, and others. When the genotypic value for each individual was determined for each of the two traits, an environmental contribution had to be added to this genotypic value to provide the phenotypic value for each of the traits. The determination of the environmental contribution required the generation of a standard random normal deviate which when multiplied by a constant representing the desired environmental standard deviation, provided the random environmental contribution to each phenotype. Such environmental contributions should have the desired environmental variance to give the desired degree of heritability of the trait. For example, for the additive model, where the expected additive genetic variance is 24 in the first generation of offspring, suppose the heritability of trait X is to be simulated as 0. 4 in the first generation. - Then, an expected phenotypic variance of 60 is required which means that environmental contributions to the phenotype of each individual for trait X should have a mean of zero and variance of 36. Thus, the environmental contribution is 47 required to be of the form 6x, where six represents the required environmental standard deviation and x_ is a N(0, 1) random deviate. There are numerous methods available for the generation of random normal deviates and, indeed, generation is not really necessary since tabulated values can be stored in the computer. But, because the generation process was relatively simple, and because a very large number of deviates were required in this study, the deviates were generated as needed. The general procedure used has been described in detail by Gill (1963). A specified number of uniformly distributed random numbers in the range -1-29 ‘ h- . ~~~~~ ”‘.--------_----—-----d a . ’ ----_ - ’a 01 >0 ‘— v 1' 0 5 10 15 20 25 30 Generations Figure 2. 1 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b-O. 8 and hi .. O. l (additive model). Var Cov Var Cov Var Cov 68 4 ,10 u! _-15 \ a‘()!\T.§::::-o-o‘.~ t.-- .... ....‘.N‘ - - - - LlwrG.o. 75 ‘ ----.~‘-~~~ - -..”.N ..... -- -------- ~ 00.. -------- P ...-Q [1.1 ~~~-- “ £ ----- ------------ c-("as 4 0. O ( JD 364 t b'1s i .“Lo- - - -.- 0‘...‘0.0;0‘:00000m....... " .—.~ ‘ .‘wrG‘OO 50 J .-.- §=:::- o. .0 so... ..‘I '11---‘- ------------ ---- - - --‘”2‘ --~- ....... —---- --.l 4 0+ do J __ rG 5|.O 3,, ...... cov ny -O-.-.-.- var OX ..15 J “- var Gy m”, - Q -. ,.o"'°-. t °'°-*’-°fl°.~nmm...~n:'_".:_ ......3 ...—.~, “‘0 rG'0° 25 . .. .- ..... ~.'.. ‘ .. .. ‘1‘/\_ vvis dt‘“ --—_ -------------- “‘~‘~‘ 'a—a-a—at “"— 5° 0‘ 0 5 10 I5 20 25 30 GENERATIONS Figgre 2. 2 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when bao. 5 and 15; a0. 1 (additive model). 69 4 ,1.0 as. ‘ L015 J ‘ 24A”... -0: - ~.\ var ‘4 0000.. ..‘.‘.~.......... P.” rG-o. 75 Cov b------. ‘.~.;.:Ooooooo... l ~~~~~~~~ ‘I~ ~'.Io.oo 0.... . “J --.‘ ‘~ ..~ 0‘.~ ~ . °OO.o0-L01‘ 4 ‘§‘---- -.--~.-.- 4 ---“ 0 'O ‘ FLO 367 #15 ‘*1 -.-.-. °'°"'OOOoooooo y Var .h'°"""'--:.I.‘3:.~w:-°""°"°'-..... y“ rG-O. 25 COV '~.‘. . .t‘ ____ ~ ‘ -.- 5'15 4..---- ~ -.fi ---_------ — - - _ -——--___--_ _ _-_- ...—-..---u-u-ul 0t ’0 0 5 10 15 20 25 30 GENERATIONS Figure 2. 3 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when buO. 2 and h; 1- 0. l (additive model). 70 , ,|.O 36. i — .15 4 fi/V ' “he... Var . F‘s... Fmrc'o'?!’ Cov .F“-.. '----------.-._.............§,__.m.wu~ - —-:':::':."'=--'.r.-- -:.-.: ‘1t ~~--------------~-~ "-—-----d . ~~...—-"' MS 1 ol 9 J pI.O 364 ..‘75' Var Frat-0. 50 Cov .o‘lS OJ .0 rG ,1.0 6. a -------- cov ny ......... var Gx _, .15 ‘ ............... var G var 1 .~°‘o~o‘0-.~ ........“Oouoooonoooouou oooooo...oo-.0°“'.o..... i-C’erO, 25 COV 4 .‘N- ._.—-—--°"’ ---------------- ~"o‘.::‘1.~ ‘1‘ /N 15 d\ ‘-—-~ .. 0‘ LO 0 5 10 1'5 20 25 30 GENERATIONS Figure 2.4 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b=0. 8 and bi = 0. 4 (additive model). 71 _1.o 3‘4 ‘ 75 4\ 2‘4“,” \ Var , Q'~'.';'-..._ :‘br C3,-0. 75 cov Jh“‘~~ ‘.‘~..:-.;.: -. ...: ~ '00. .000 ‘~‘--- -0-.- ~.:: 000 a... .. ‘ti -------~--- ~ ~'~o~.~ .....'oo. ”a. 4 ----~-~--.:-.: O 4 ID. d .10 36. ‘ ‘ L076 Var -"°rG-0. 50 Cov .. M” . O ‘ . '0 J 1.0 ..I.O a. 4 xy -o-e-e-o- var Gx HTS “4 . . ... .. 0.0.0.000000000 var GY J‘:ooeoo 00........-. Var \.‘.‘ Huh-..." cSDerO.25 COV .‘°\—o-._ ......H.H""."°"-o..... J - - o‘.‘ ° 00 e- "- E‘< ..... ... "as Jb-----------‘----.‘§‘~~‘~ -.-'~ a-.. o ‘ §-- ...... ~_----.-‘------..+i° 0 5 10 15 20 25 30 GENERATIONS Figgre 2. 5 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b a 0. 5 and I; n 0. 4 (additive model). 72 1 .1.0 36 , . 5'15 4\ ‘A 31.4.. \ s,‘ .m Var L "K * rG-O. 75 C‘. COV ‘ ‘\~\ ~'~.‘:: ' .. ...... '2‘ “‘ ~ ~.~.~. '0 ... ----~-- .~o‘ N". 7'15 4 -‘~‘~ ~.‘ . .. . o. “~~~ .-.‘. o ”a: 1 -------.~‘- - - 0. -'-------.-dlua-a-a_ O + . .L0 36. 1 .915 344‘...... n I Var ‘-\ _.sorG=O. 50 \. '- 4 —- rG "'0 3‘” ----- - cov ny ‘ ........ —var ex ..7: 241.,\......,,... ----var C}y Var . x,‘ i‘r :0. 25 .\ G GENERATIONS Figure 2. 6 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b-O. 2 and 15; a O. 4 (additive .model). 73 « 1.0 36. J ..15‘ 2%»."g. Var . ‘\-- --~'° 1‘50. 75 COV K~ ““ .\ ........... ~°~°~0~._ ;.“:...:.:::.—°':"° 000...... . 12.4 ~~----.._.____ __ ____ -~.-,_.:-_--.-::.......... " " ------ --____ ____:'_"_;: as J 0 L0 . .m “4 _.15 J fibre-0. 50 (.15 04 o 4 —— rG 1.0 36. -------- cov ny j —.-.-._._ var Gx 5'7; 144..-- ... " ° ........... var Gy Var a '~.o~.‘. °.°o....”. piercfi). ZS Cov K.‘ ‘ ..."°"°-. . .. ......,..-.9..,........ .. \._______‘-__‘ .4 '1. d .~."‘.~ 4 i was 0 ‘ --- --------- ~ ----------- ‘50 0 5 '10 1'5 20 25 30 GENERATIONS Figgre 2. 7 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b-O. 8 and hi ...0. 7 (additive model). 74 J .1.0 ( ~ ~ 5‘1 ‘ ‘. ...... ~~-- ..~ . ... --- ~ 0 . ."°ou ’ 15- ‘- - ~. ... .... i s- -O—.-. 900.000.... ~‘~ ‘. '00... h------~ " ‘00." t --- ‘0 ~~°~. N_~O~:.- - .1 ~50 4 1.5.0 as Var ‘\" . ..corcao. 50 Cov t - . . '20. .as O 4 -------° 1 rG 1.10 ------- cov ny -0-e-o-c— '15 var Gx t Z‘iK.......'....o-o-"‘°..°o.“... '0-00 ... 0.00000 var GY Var ) ~.\ .. ring-30.25 Cov '\ H ) r15 1.0 0 5 10 15 20 25 30 GENERATIONS Figgre 2. 8 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when beO. 5 and h): a O. 7 (additive model). 75 4 .10 36. J .375 24‘ Var . --sorG,0.75 Cov . I1... ..15' O 4 -0 p10 “4 J v75 4 Var {513620. 5 Cov ‘ '°----............. ......e.....................l’°15 O . ~~~~“- :4:.°-.'='.".':.'.= '_-:=.scam-Iantq_° 1 —— rG .1.0 36 - G ----- COV XY J ...—0... var Gx “15 “‘Q.. ......o....... var GY Var 4 \ vases. 25 Cov . \.\ “r25 0 0 5 10 15 20 25 30 GENERATIONS Figure 2. 9 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b=0. 2 and 1;; =0. 7 (additive model). 76 generations of selection, and the genetic correlation remained near its initial level in every case. The genetic covariance was also conserved at the remaining two levels of environmental variance when b - 0. 8 (Figures 2.4, 2.7). Thus, when level Of selection was low, the genetic covariance remained quite high over all levels Of environment, the greatest decrease being at low environmental variance (h'x- O. 7) when genetic covariance was about halved over the 30 generations of selection. (Figure 2. 7) With increasing level of selection there was a greater decrease in the covariance. At (b =- 0.5), for example, the covariance clearly decreased at all levels of heritability while the correlation remained high and only decreased noticeably at h'x - 0.7 (Figures 2. 2, 2. 5, 2. 8). For initial rG of 0.75 in Figure 2. 2 the genetic correlation was still 0. 7 at the 30th generation while the covariance had dr0pped from 18 to almost 9 or by about 50 per cent. The genetic variances of the two traits had also declined in proportion to the covariance causing the correlation to remain high. When the selection intensity was high (b = 0. 2) , the genetic covariance quickly declined at all levels Of environmental variance (Figures 2. 3, 2. 6, 2. 9). In Figure 2. 6 when initial rG was 0.75, the genetic covariance had already dropped from 77 18 to about 2 by the 20th generation while the genetic correlation had only decreased from 0. 75 to about 0. 55. In general, at low levels Of selection both the genetic covariance and variance were maintained over the 30 generations Of selection. At higher levels Of selection, however, there was a distinct downward trend in the genetic covariance; but because of an accompanied decrease in the denominator of the correlation coefficient, the genetic correlation remained quite near its initial level. Only when both selection intensity and heritability were high, was the correlation coefficient decreased markedly, and this decrease mostly came suddenly ' after the 15th generation Of selection. This sudden decrease can be clearly seen in Figure 2. 9 where the genetic correlation, initially at 0. 75, was still close to 0. 50 at the 15th generation despite a rapid decrease in the genetic covariance. By the 20th generation, however, the genetic correlation had dropped almost to 0. 1 at a time when the decrease in the genetic covariance was leveling out. A reduced correlation could, in fact, be due to an increase in genetic variance rather than a decrease in genetic covariance. An example can be seen in Figure 2. 1 when the initial genetic correlation was 0. 5; there was a small decrease in the genetic correlation between the 10th and 15th generations. Yet, the 78 genetic covariance increased somewhat in the same period, the reduction in the genetic correlation being due tO an increase in the genetic variance Of the selected trait. Thus , the genetic correlation does not necessarily provide a reliable estimate Of the genetic covariance. The Genetic Correlation in the Truncated Distribution. The effect Of linear truncation Of one variable on the marginal distribution Of a correlated variable has been discussed previously. In general, the conclusion was that the correlation Observed within the sample Of individuals selected as parents will be lower than that Observed within the population of all Offspring. The theoretical treatment of this problem by Aitken (1964) and by Mantel (1966) has already been reviewed and was concerned solely with the phenotypic cOrrelation between the variables. Whether the same effect would hold for the genetic correlation has been examined by measuring the genetic correlation each generation in those offspring selected to be parents Of the next generation. The phenotypic correlation is a function of both the genetic correlation and heritability and also of any environmental correlation between the traits. Thus a reduction in the phenotypic correlation between the variables might not necessarily mean a reduction in the genetic 79 correlation. Figures 1.1, 1.2, and l. 3 show the genetic correlation both in the complete offspring generation (solid line) and in those offspring selected as parents or in the truncated distribution (broken line). Clearly, truncation has caused some decrease in the genetic correlation. This decrease is apparently a function of heritability rather than of degree of truncation selection. When the environmental variance was high relative tO the genetic variance (h'x — 0. l) , there was some tendency for the genetic correlation in the selected groups to be lower. The difference, however, was quite small and not consistent. Again at h'x- 0.4 (Figure l. 2) the difference between the two correlations did become larger, but neither level of selection nor initial degree of genetic correlation had any appreciable effect although the difference did seem rather more consistent when initial rG was 0. 75 than otherwise. When the environmental variance was high relative to genetic variance (Figure l. 3), the effect of truncation selection on the genetic correlation became considerably greater. There was a more consistent reduction in the genetic correlation, and the reduction- was greater. Again there was little effect Of level of selection on this decrease. The results shown in Figure 1. 3 correspond most closely with those expected in the phenotypic correlation 80 since the expectation of the phenotypic correlation approaches the genetic correlation when heritabilities are high. The effect of truncation selection of one variable is to reduce the Observed genetic correlation between it and another variable and should be kept in mind in selection practice. The amount of this reduction depends markedly on the heritability Of the selected trait rather than on the intensity Of selection practised. A more detailed examination of this problem, including the effect Of selection on the environmental and phenotypic correlations and on the heritabilities as well as on the genetic correlation, should be carried out to clarify the effect Of selection on all Of these parameters and on their interrelationships. The statistics required to examine these relationships were available, but a detailed investigation was considered beyond the scope Of the present study. The Estimates Of Genetic Correlation from Phenotypic Covariances between Parent and OffSpring. In addition to measuring the genetic correlation from the product-moment correlation Of genic values, two separate estimates were Obtained from the covariances between phenotypes Of parent and Offspring. The two methods were: 81 a) 9G = (covapPyO) . (covaprO) (covapro) . (covapPyO) b) 4’0 _.__. (covPXpPyo)‘+(covapro) 2/(covapro) . (covapPyo) where Pxp -phenotypic value Of trait X in the parent Pypa H 11 11 trait Y 11 11 11 i; Pxo= " " " trait X in the offsPring ] PYO = 11 11 11 trait Y 11 11 11 ,1 Since the number of observations upon which the genetic correlation is estimated is known to have considerable effect on the precision of the estimate, it should be emphasized at the outset that the sample size available here was small and varied with the level Of selection practised. The number Of Observations on which the estimates were made was 60, 96, and 240 when the level of selection b was 0. 8, 0. 5 and 0. 2, respectively. Results Of both methods were extremely erratic and were almost impossible to interpret. Extreme selection Of parents could be expected to bias the correlation, and extreme selection occurred here when the number Of Observations was largest. When level Of selection was low, the number of Observations was small resulting, in both cases , in unreliable estimates. 82 Lush (1948) has suggested that where sampling errors are a major concern, as when the volume of data is small, it may be better to use an arithmetic mean Of the two covariances in the numerator rather than the geometric mean. Thus, although both methods of estimation gave'completely unintelligible results, a few examples Of results when the arithmetic mean Of the two covariances in the numerator was used are presented. The results are in Table l and are the deviations of the genetic correlations measured by parent-offspring covariances from the product-moment correlations Of genic values. Only two levels of selection were considered, b=0. 8 and b -0. 2, in an attempt to detect any difference due to number Of Observations. In addition, five different combinations of environmental variances are presented to examine as wide a range Of these effects as practicable. Sample estimates are given for the first replicate for generations 2 through 6 and then for every fifth generation thereafter. To distinguish any pattern in the results is futile. Most estimates fluctuate markedly and apparently randomly from the true correlation. In fact, it is rather rare tO find an estimate within 1 0. 20 of the expected correlation. In general, however, there is some tendency for the correlation to be considerably under- estimated. Of the 300 deviates shown in Table l, 179 were 83 $5 $5 $5 55 $5- 35- 25- £5 55 5.7 e5e5 .. .. film 85- 2.7 $5 $7 $5- $5- $7 S5 35- 7ee5 .. .. 3.785 $5- 8.7 555 $5 $5- «5.7 N55- 35 e555 .. _. 59m 25- 55.7 35 ...-ete- 555- $27 555 $5 ~77 e575 .. .. 55.785- 37 8.7 55- 85- 25 $5- 3.7 25- 7575 N5 .. 3.5 $5- 3.5- 35 84 555 $5- 25- 25 £5 e5e5 .. .. 35-2-5- e~5 $5.- 577 8.7 555 $5 35 $5- 5555 .. .. $4 $5 25 $5- 3.7 3.5. 5N7 85- 35- X5 5555 .. .. 55 55 2.7 3.7 $5 £5. 55 85 35 A55- 55 75 z __ :5 25- 85 $5- 2.5 $5- $7 $5- :5- $5- 75 75 55 em. 85 meg AX5 Ne; 35- mw.7 $5- 85 £5- 597 e5 e5 .. e 3.5 $5 2.7 85- 35- 555- A55 555- 25 $5 75 e5 .. = $5 $4 85- 35- $7 25- Ne5- 55- 2.5- $7 «.5 e5 .. ._ £5- 35. E5- 35- $.5- S5 :5- 35- 55.7 mm; 55 7o .. .. 85-35- 35- 25 $5 $5- 85 $5- 35.- 85- 7e _5 N5 .. $7 55 55.5 :5 55; ~97 25 8.5 $5- 35- e5 e5 .. .. S5 597 ..55- 3.5. 37 3.5- 35- 2.5 35 we; 75 e5 .. .. 85 $5- 55 e55 555- 555- 85- 27 E5- 35- e5 e5 .. .. N55- 35 55- 35 $5 35 $5 X755 55- e5 75 .. .. $.5- 555 85 S5 :5 555 2.7 $5 $5. 55- 75 75 55 mm. on mm em 2 S e m e m N >3 xi e. on zones-mmzmo Geno; o>wpwn© 393955- wo COMBO-COO EoEOELoSUO-fi we: Eon.“ moucmmnmlyou mam-Hammo-ucOnmm >3 COS-20.300 oEoCow 93 mo Comumfrom .H awash 84 35 25. E5- 35 3.5 :5 87 N77 25 35- e5 e5 .. = 55.7 555 37 $5- 355- 85. 35 5.7 $5.. 35- 55 e5 .. .. 35- 3.7 35 3.5- 5.7 3.5-3.7 $5. 555- 555. 35 e5 .. _. 25 $5- 2.5- 35 $5 $5.35 35- 3.7 35- e5 55 .. .. 35- 555- 35- 555 $5 57735- 555- 35 $5 55 55 N5 .. 355- 25- 55- 35 35 555 55.7 ~55- 555- 3.7 e5 e5 .. .. 35 E5- 55- 35.3.7 m55-ee5 2.7 2.7 3.7 55 e5 ._ .. 35. 35- 555- 35- $5- 25 $5- E5- 25 $5 35 e5 .. .. 85- .35 3.7 $5- 35- 355 3.7 35 35 35 e5 55 ._ .. 35- 55- 35 35- 35 :5- 555 Z5 3.5- e~5 55 55 m5 3. on 3 em m5 2 e m e m N 5.5 xi 5 on zofi0 3 I j’ I U 0 5 10 15 20 25 30 GENERATIONS Figure 5. 2 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when bro. 5 and Selection by upper truncation. ' - 0.1 (complete dominance). 105 var “ ‘. ... 9 e. rG'Oe 75 l ‘\‘ ‘9‘. . e .. i‘o COV ‘~ ‘ ~.‘ ~ .' e 1 §~-~---- O-.- -. ~. ~ . .- ml ..----- ‘0 so .. 4 1.6 ~ . .-.-..“w1‘ ‘ -s-e-s-o-var Gx o d e seen-var G ,0 Y . “.0 new”... 4 \o ........ e. ‘o\. .... 0......” p.1‘ d ‘4‘ "- o‘.‘ 1“ .\\ .....90o.00se Var .\ -~.~. Lrpzo. 50 L. ‘0‘... ceases-.....u....~ COV'. ~~- ‘————__:;:»- —e~.______ ‘1. \ ‘.~"s~. 0‘. . . . . 5.1; OJ .0 l ”.0 “J'Vé‘fioseuo .‘. Queue........ i \ ‘ ".... e. 15 J o‘. .7 "a \. 2M \ x. Var l "m‘. EMS-0.25 COV . ‘."\.‘ n‘ s.~-~._.-.- '-"‘---.-.-.r15 l" """ “"~-~---..- \ J ~~~--~-----. --_- - - --.-- ---_--4 e l o o 5 16 f5 20 25 30 GENERATIONS Figure 5. 3 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b n 0. 2 and h; - O. 1 (complete dominance). Selection by upper truncation. Ii- ..1 in»! M. ".42. 106 4 .LO 3. .l—nnsflhfllmtfdgfi Q3” ‘ A ‘135 J—------‘-\ 1‘4 ..9'00. .0... ....... "0 ~‘ .‘0-0-e-s-e;:. ......“- Var . ‘5‘ "‘°"°-~-- -~ —.-....._ '“l‘G-O. 75 s‘ ' Cov 4 \“‘-‘----¢----------~ ---.q all r6 r1‘ ‘ -..—...— cov Gx ‘ -e-o-e- var G e l x lo soeeoeseso var Gy ‘ ”.0 “4L", -' C'.‘. o. J O..~.~. .... 'Oe-o‘e~ ... Ts ( ."\ ~ ' " 1’J ‘-o-e~e-e‘.~.~ .q Var ,; ‘.‘ y QrG’o. 5 COV ~~ ~ ~. -.- -.- ... ~~~~_---.---o-- '1 ----..- -~--- .. fi—Q—O--‘-----“-‘L'ls O 4 50 ‘ ,'.0 a ‘Wtazooeeeeeeeeee... 0‘. 90.0.0.... .......... J ~‘uo‘ . ”... .... "...... .15 .‘s ....."Oe. .0009...“ ‘ "§.~ ...... °. “4 ‘~a var ‘0‘ -—-._‘_ ‘o-e-s§ ‘ ‘WG’O‘ 25 COV .l -.-“ ' ‘JA \ "1‘ ‘1'- “~~ ------- -~~~ — Q~~-_-----_-- ...... d 4 o 4 L0 0 5 10 15 20 25 30 GENERATIONS Figure 5. 4 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when baO. 8 and hi 4- O. 4 (complete dominance). Selection by upper truncation. 107 J 5.40 as 1‘ '~§§. a; ‘7‘ dk ‘ ‘11: 6 so. I s . \ “, ‘\“ ‘~ ~-~.... ...... .. Var . \~‘ -‘s.‘ "*n... ,wrG-IO.75 ‘ ------ - . .....ess cov ‘ ~“~“s‘ '0 usssssss... ~ ‘3- .. . "'.Ooo .‘ ‘ ~Q-- .~9~I~. ..."- rG -~~ .N ’5 ‘ -~~~~;-O- - - - - - ..... - var Ox 1- O 4 O ............ var GY J HO 3‘. N s 3‘s.sss..... ‘ \.\. .....'.'s.ssss V‘s ‘ \.‘ ......... .‘. ....9s I‘J ‘.‘.‘ ..O~OOOOO... var ‘ .‘.‘ sssssss sss ssssssss... ..... bwrG.O. 50 cov 5“ s .....‘ls . s~~~ ‘~‘ v \ '1 ‘------ ‘- - --o- - --~‘~ ‘.~.~ h.“ 4 ~~~~~ .-.-.‘s 04 +0 .10 ulk:"¢ss ‘0 . 00s. J ‘.‘.\ .. .......“°ss..ss s s sss p.15 ‘ .\. ssoeossssssssssss~ t" ‘0‘ ‘.‘ s... ...“ Var . ‘\-\ L-firG'O- Z5 ‘.‘. Cov . 7"»-.- ‘ta A ~ .~." ‘ . L1‘ \ ‘s‘t 1§--------- ‘% C 4 '0 O 5 10 15 20 25 30 GENERATIONS Figure 5. 5 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 5 and hi :- 0. 4 (complete dominance). Selection by upper truncation. 108 ‘ no 3.. .4 L15 4 8". var , .flr so. 75 \\ G Cov 4 "s . .......O.s~..0000000. 115 4 ; . - Cohosssssssssssssss0+ J ...-.0 Cov ny ~‘-~:;-:.°-0 .-.-.- o J -. -.-.-var Gx -..--. - ----..:>° .......... .var (:3, J ,I.° sol" 4 "I‘m. \ .15 J \.\ .... "d ‘0‘ ...'e Var .\. .....ssssssssssssss... rwrG‘o' 50 Cov ‘~“‘ \ ... ...... ~“‘ \\ . ...... o.....ou...........~ “4 “‘~‘ ~.~.~.~.~.\ ‘2‘ 4 §‘-------:-~.~. . \ 0‘ ~----‘-“‘-:‘-".:::l0 4 .IO 864 J‘\... . x, “1‘ J \. z“ \\ - - ””‘mml Var ‘ \‘ 5“ 1.6.0. 25 \. COV J \N. .\ ‘14 \ ‘.‘. r26 ~~~~ ~°\. ~‘~‘ W 0‘ ‘------—__--------..t':.l::'.'::.:::io 0 '5 10 15 20 25 30 GENERATIONS Figure 5. 6 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when halo. 2 and hi s 0. 4 (complete dominance). Selection by upper truncation. 109 J fl.° “J N .. ‘ “0".:--.... .~.‘ ~ .... O -A H16 4 “ ~ \ HQ ‘0‘. W ....... 1‘4 \~~“ ‘s-~.~.~ ...... .. ............. \~ ----- - 0‘. ............. . Var 4 ".~~~~~ "~ -.- ~ ~ ....... “para”. 75 COV ‘ ...N--------.- ~ - ~ - - ~ 't -----‘-- a4 ‘ -----~p‘z‘ 1'0 d ------cov Gx ‘ ------ ..var C}x ° ‘ ............. var GY *0 d ”'0 3““:m..... d ‘g ‘2‘:;:: o . ...“ b'” d 0 ‘.~.‘ 0. Q 1‘+ ~ ~.~ Oo............. + Var . “-~.- ~ m rG-o. so COV +_~-"—----~~- ~ ‘0- - - __$ ‘ ~ ‘~. ~'-.~ 1‘ ~~~~~¢ ------ a- “as 04 lo a ...o 3‘4h:ouoo ‘. \O \K. . “75 l “\. 1‘4 .~ ~. - ~ .~ .. Var J -~..~ ~,~. "‘3 I'G-O. 25 Cov 1 ~ ‘ ~.-._ _ I14 -—.— —. ~ ... ‘1‘ 4% J ‘ ---------------------------------- _ ______ . O4 $0 I I T I U 0 5 10 15 20 25 30 GENERATIONS Figure 5. 7 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when buO. 8 and hi .- 0. 7 (complete dominance). Selection by upper truncation. 110 J “.0 364‘ J "‘m \;-. ,JS 4 ‘-q- s 14. ‘\‘\ \ \ ‘ ~o......\ var J ‘\\s \.\'s .....“o. \h”rG.o. 75 00" “~‘;:-‘.‘ ..."~. m __ r \~;-.:;\.~ ... . . -.....19 H} to ' m- t: - ..10 ..SOrGIO. 50 .15 Lo 4 n'o are... A .‘. . \I\ .00. I." 4 “. u. \'~.‘ Var J KN marcuo. 25 ‘\ Cov J '\ .‘_ "H ‘.\.‘0§-§ a ------ “-"‘“‘-—-----"‘.o '0 '5 i0 i 5 ab 25 30 GENERATIONS Fi re 5. 8 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b - 0. 5 and h; a 0. 7 (complete dominance). Selection by upper truncation. lll J JD 364 ‘ L575 1‘4 var ..30 rGuO. 75 Cov ut 4 .13 O 4 'o "Hon-""VEI' GY ‘ JD 16 «H J .\ ......... o\ I...~ ’1‘ i '\ w \. \ var ‘ .\ 000.....0..... 5-“rG.00 50 cov +K\ .... . ... ......“..°.ocee s . "n. " “ ‘0 “...... a. \\ ~ \ c I J “‘~ \ ~ ~ \ 5 ( “‘\---::;~.- - -.- . i - ...... ‘2 :.:_-:_:_-_-:.'.= :94 o 4 HO 91k:.... 4 \, \ p.15 4 .\. "4 \°\ ‘00....4...oo....-00"0000. Var 4 ~\ “use real). 25 cov 4 ‘.\ GENERATIONS Figure 5. 9 The relationship between the genotypic variances , covariance, and genetic correlation at three levels of correlation when b r 0. 2 and hi I O. 7 (complete dominance). Selection by upper truncation. 112 expected from selection for a dominant allele, the change in gene frequency by selection becoming more difficult as the frequency of the recessive gene becomes less. For example, in Figure 5. 9, top graph, the genetic variance had decreased from 36 to about 6 by the 15th generation of selection, yet did not reach zero in any case over the last 15 generations of selection. During this time dominance of the favoured gene was actually a hindrance in changing gene frequency because of the abundance of the favoured gene in the population. Essentially the same conditions are acting to maintain the genetic correlation as in the additive model. As previously noted, a further experiment was conducted under the complete dominance model. Rather than to select upwards for the dominant allele, selection was by lower truncation for the recessive allele. All other assumptions and conditions were identical to those for the first experiment. Figures 6.1, 6.2, and 6. 3 show the change in the genetic correlation over 30 generations of selection. The behaviour of the genetic correlation measured in the unselected offspring (solid line) conformed closely in most cases to that already observed for the additive model and in the complete dominance model when selection was by upper truncation. When selection level was high, however, the decrease in the genetic correlation 113 "J b-0.Z . 00+ '1“ “.---..-- -- ...-I... " '- “‘ "’- ‘ - b-0.5 rG. OJ l0. —— rG (all offspring) ------ rG (selected offspring) 0. V T o 6 16 1'5 20 25 30 GENERATIONS Fi ure 6. 1 Change in genetic correlations at three levels of selection when 1),; a 0. 1 (complete dominance). Selection by lower truncation. 114 L04 b-0.Z b-O.5 "d-----—--—-- - -- -- '- .15.? ~41. ~q-“-— -—----~-------‘-- ‘b'O. 8 ‘~~~/" rG (all offspring) OJ ----..rG (selected offspring) o 5' io 1'5 so 25 3o GENERATIONS Figure 6. 2 Change in genetic correlations at three levels of selection when lg II 0. 4 (complete dominance). Selection by lower truncation. 115 "o4 l.04 13:0. 5 b=0,8 rG (all offspring) o. --..-.rG (selected offspring} o 5 10 15 20 25 30 GENERATIONS Figure 6. 3 Change in genetic correlations at three levels of selection when lg = 0. 7 (complete dominance). Selection by lower truncation. 116 was more rapid and reached zero by the 25th generation of selection when heritability was high (Figure 6. 3). Figures 7. 1 to 7. 9 present) the genotypic covariance along with the genotypic variances of the two traits. When level of selection was low (b-O. 8), the genotypic covariance and variances I. of the two traits were maintained at near the initial level 93"‘35' “it? {5‘ .-. 'x" ‘ especially when environmental variance was high (Figure 7. 1) As level of selection increased to b-O. Z, the decrease in the genetic covariance became quite rapid regardless of the level of environment, although the decay was more extreme when environmental variance was small (Figure 7. 9). The covariance and variance were maintained at a fairly high level for the first five or, at most, first ten generations, and then the decrease became very rapid and curvilinear through generation 20 after which they levelled out again through the 30th generation. The shape of the curves showing the decay in the genotypic covariance and variance of the selected trait were quite different for selection by lower truncation from selection by upper truncation. When selection was by upper truncation, a rapid decrease occurred in the early generations of selection while lower truncation selection did not change the magnitude of the genetic variance or covariance greatly until after the 5th generation, and then the change became quite rapid. These observations 117 4 JD ’0’.~. u4-me,.,3.._,.,..;ffif.:....u- .::..‘.~. J 0.0.5.0... 0.....‘.~ - — - ‘ -. I ....“ oooooooooooooooooo . . ...O 03%.; m” Q ,i”.‘~‘ w "’E'.— u ‘— 1‘4h ----qu" ~‘§‘§- .4 var J ----n-------"‘—‘ Marc-o. 75 Cov , '14 rG Lu. J J ------ cov G X ...... - var G O . Ox ’0 ............ var Y . “ID “in.“ ‘00. ‘ 0’0 -0- too... .... . .’. J ‘ 'Q.‘.‘ :;..}“..’OOOO.. .h '.n 4 ‘0’ s .0. ----- -‘ 144 Var arc-0. 50 COV Jp—-—-------~ ‘-’- -------.~~~-~ J I .4 1 ~25 d O... .0 ' no . “‘N'u:.-“:::::::u "0.3.... ‘ ~". '\0 ...,::?.’ ‘- ...... ‘ .. ° 0 cl \.‘o-o' ‘wh POTS d “-4 4 Cov 4 I14 ‘ ........... ----u (”1‘ 4 .- ----- ‘-—”--.----— ~~~~~~ 4 O4 .0 ° 5 1° 15 20 25 3o GENERATIONS Figure 7. l The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 8 and h; a O. I (complete dominance). Selection by lower truncation. I. J ’.’;- .- _. ‘l‘ .. ‘- A- ‘ L o .' ...... ' ~ - a” I . o 364,.«1‘6 -. ... “u:::..~.~ ....":oe~.. ‘ A J._————---— ” "'- -:..\\"‘F5 0’-.. ~“~ a---- 5". ‘w“‘ ~“-g-—"-“ ----'--- ”‘5” Var 4 ~\ .erG-o. 75 “ Cov 4 \ .14 1'0 2‘ ‘ ..... cov ny o ‘ ...... var Gx Lo coco-coo... var GY ‘ o’a.P-:-O-o-_‘o—o-fi"—.‘ $.D .’. 0...... “JFO’ “~u.............-- ‘0‘. J OON<~~OIOQQQ... H m 0‘.~ o. . p i °‘.‘ '0... 0"- ...... o~.~ 0‘ "l .~‘~.~ var 3%---- ------ \L-” 1' fi. 50 C P“‘ -- - ~-~~~ G '11 ‘~‘§‘~ p.15 J J o J .o 4 >I.O “dh’.?:ruo-o-e-a~o-.~. J ° "Wm-m. .....:,-.-.-.-...«.-.-:-.~.-.;-.-.‘.-:.°::~ ~ .. 00c...:.~0~ -.- —.-. 501‘ J on. . on e>:‘.~ . ...." 1‘4 ‘.\‘ Var ‘ ..s‘o rG-O. 25 Cov II. A % ----------- W "1‘ Jr ~ ----------- “---- .4 4 I4 #0 V V V v 0 5 IO 15 20 25 30 GENERATIONS Figure 7. 2 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 5 and h' n 0. I (complete dominance). Selection by lower truncation. 119 ,u v75 bu“tG‘o. 75 r ‘s ‘w-IS G G ‘--~ -.-.-....- var G 04 x ’0 ......OCOOUOO var G Y ‘ bl‘ 3‘ - ~ - u-w-‘z _° °.:..‘ :z‘.‘.‘.'.“..'.'.‘;'-‘-'&'3°-n . .... 4 ‘3' n: o. .' - d “0"“... u. ‘x ° - Var \x «... . W ‘-‘-—’~~ ‘~ 4‘. oarG'OO 50 Cov b-------—‘ ~~~~~ \ d ~~~~~ .~o~. u. ‘7 - Ex“ ~~~.- '1‘ ‘5 4 “‘~ .J 0. '° ‘ ’0” .-.-."-o~°‘ "‘0 36‘ ...{:.... . ......o ""0 “w:0000... ' . ....."o ‘.‘.'°oo..... ‘. .... d ‘ .... .\. '0 ”7‘ ‘ \. 00...... \, v u‘ \o ‘ u o .( ar ‘ "\. ...wI'GSO. 25 \. Cov \ .\ a '\ It, ‘ 'x, ‘0 -------- Np. ‘~~~~ J h~~~~~_--__ 04 '° 0 5 IO 15 20 25 30 GENERATIONS Figure 7. 3 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when bro. 2 and hi I! O. 1 (complete dominance). Selection by lower truncation. nth" ... 1s. - .-. ( .a' ’I‘ne"" . .. -. "'0 4...oot‘° 0‘. ’0‘ .... sub-fl“ x ..w-" '~.;-- .. ovu ‘ ...... .\.‘ "- ~ V ‘0 "‘0. '1' Ofifi‘-’---_---‘------ ‘~~ .‘.=:.....‘ no :- ~~~~~ ‘0‘. 1“ ~~~~~ ‘.~ s- 'N Cov , ‘14 I'G Vat ------ cov Gx o q -o-o-e—o- var Ox .0 var C'v . Lm “d“:g..:.1...':..;.::°.’.g1.~.2~.~o~ 4 000...:.O:o-0- -.::.‘.‘~: ..... .‘. ... p“ I ‘.‘.- . '5 ad ....-. ------- ~§ Cov in---‘ ~~~~V 4 ~~-------------------- '14 E-‘ “1‘ 4 o J #0 J v.0 3.”... ~ - - ’,/°~-'~ ‘ ‘ . . ‘17:. c2“, ,......... -.-.\ ...‘ . . 0 so. no.0‘00‘oo o P.” 1 "- 2?“:3. V as. 31' ‘ ”QIG'O. 25 Cov ..1‘ O 4 )0 ' ' v I f 0 5 IO 15 20 25 30 GENERATIONS Figure 7. 4 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 8 and h," . O. 4 (complete dominance). Selection by lower truncation. . , -..__.v . , I-w' 1i! 121 ‘ ..LO u. ‘ ..15 as. Var 4 (a 1.090. 75 Cov . .14 ‘s,~~ .\° 5 4 1‘6 ~“~~~“‘u ‘ ------ cov Gx “ 0‘ -.-._.-.- var GK 0 ............ var Gy T" .35 ”Jr” 1.6.00 50 '~ ...,le Lo LID $.75 good .50 r020. 25 "Was 04 ---------.-o o 5 1'0 f 5 20 25 30 GENERATIONS Figure 7. 5 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when bro. 5 and h' 4- 0. 4 (complete dominance). Selection by lower truncation. 122 4 JD 36 .. -.uwflfl'wao~.‘ J Ahfh.‘ r-T‘ Jn-D-‘-‘-“‘ 144 Var , psochO. 75 Cov , l1. \, --16 2 1 rG \ \N, T: ‘ -—---- COV Gx ‘\: s a o ‘ ...-.-.-var Gx - NIL-...?debo var Gv . 4.0 r ..— .75 Var r-mrcgo, 50 Cov .415 .0 4 no 364.— -—°"'"°‘. “3‘...“ ... . \. ° ( \. .... .\ ...“ b‘?‘ J . '\. . t ooooo so 0 .. 1*- . . ' " " -.4 Var { -\ L-GorG-O. 25 Cov '\. 4 \.‘ ‘t' .- ..- -~- .‘.‘.\ .45 4" ~Q-‘ .\‘f 04 --- ----" 0 5 IO 15 20 GENERATIONS Fig‘gre 7. 6 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 2 and h; a. 0. 4 (complete dominance). Selection by lower truncation. 123 4 4.0 3‘4-00133... .. ...- ... _. 4 ...-..”-.-.—-.-.~::.'=.|.In‘r" . \hTS " 0‘.;0.ooo...~. ------—--~~‘ --- ‘0‘.‘ “as. v 1‘4 §‘-------- -~-~~- ‘ ‘0‘.. ..e ar -----.--_ x. "-..€orG-O. 75 s \, Cov "\ d ‘ N ".4 . 1'0 ('15 4 .. --...- cov ny “...-0 var Ox 0 ° ‘ G ' cocooooooeco var Y 4 HO “ ~08:‘£:-e;:2:'0.. \."° 0 .... 1’ - - -°-'- - J \" ....'o..’o’.’ ..oo"0:~.ooeeso. “K ‘ .\..’.’ '0. 0... ‘.~ .... .."' .~o °"~4 V 3" ~ -.-'-°--— ar J ”’, \ ..s‘orG-O. 50 Cov p " ‘\~ A “ ‘-—’a~------------ n. V" ---‘~~- ‘ ~~4,.1‘ 0 ‘ ..O . ".. -I.O “(bgfom - ‘. ..e' ... 4 . 0 -.~ ‘0‘...... .a-"".‘. ... .0. ~‘Q ‘ ’ ’ ~ ..e . ~~ ., ..15 "O 4 ‘34:- ~ . e~.~. ‘4 2‘1 ~.‘e Var ‘°~ a .ng'O. 25 Cov ‘ ' 4 I 3.4 .16 _------- \ —’- ——---( 4 “\—“— ‘-- o 4 »O W t I I v 0 5 IO 15 20 25 30 GENERATIONS Figure 7. 7 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 8 and hi 2 0. 7 (complete dominance). Selection by lower truncation. fl 124 ‘ 4.0 u4~vug.o:... ...... 4 ~. "*3... 4\ K. l‘i ‘~\~‘ ‘0 v ------------ .‘. n .. . . ar 4 N~~~~‘ ‘.‘:“~‘.. b“1.0.‘o 75 Cov. ~~“ .‘.'Oos co. . ~ I .. .1 4 ‘~‘~ ‘.\. . ...... 0.. 4 _ rG ~“\\‘. ’ 15 G ‘~‘ s “\ o . -O-o-o_ var Gx Tho ......O..... var Gv ‘ ”.0 u‘_.~.“‘fi%=:ma§~o see. es 0 as... J 0‘ ......I.... ~ ‘0‘. .. ....s ’7‘ ~e~.‘. . 0.. ‘ ..°o. “4 .‘. ...'”°Nou —‘ \. escoog‘... b- var .- \ ,..'-. “1.0.0. 50 Cov 4 ----..-“---noog--- \ \ ....‘O. I14 ---.‘s ." ““‘ ‘0‘. .15 ‘s 4 “-~- \\.~'~ { -~-.‘~~ . ..'~.‘ 04 to 4 "'0 “4BM.'.".-:.-.;. ; ‘00. oo ‘ .;e .....u ...00 0.. . 0‘. .... "7‘ \. .... 4 \. ~ 0 J ‘0 ... ’0 1‘ ‘.‘. ... 0.. var J ‘.\. u.....-.-... L.” rG.o. 25 Cov \°‘~ 4 ‘° \.\ ”HM .\.\. *‘2‘ Jr-- -----O“------ \.‘ ““ .‘.“‘ 4 “s‘ "' . ‘ .n---------._ o o 5 10 15 20 25 30 GENERATIONS Figure 7. 8 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when b-O. 5 and h; 4. 0. 7 (complete dominance). Selection by lower truncation. 125 u». --\ Var J Cov J IIJ r ‘ -----cov G ' . 4 x “~‘~'\, J "”-'-'-Var Gx ~“e O ........... var GY )- ~73 "9 r000. 75 as w r” 1.6-0. 50 ..15 . L'“rG.OO Z 5 5-15 o 5' 1'0 GENERATIONS Figure 7. 9 The relationship between the genotypic variances, covariance, and genetic correlation at three levels of correlation when bro. 2 and hino. 7 (complete dominance). Selection by lower truncation. 126 follow quite logically from the theory of the rate of change in gene frequency under selection when dominance exists. These circumstances have been discussed in detail by Lush (1945). An interesting observation in the results, especially in the dominance model, was the close agreement between the change in the genotypic covariance and the change in the genotypic variance of trait Y, the correlated trait. A distinctly similar pattern of response can be noted in every treatment combination (see, for example, Figures 7. 6 and 7. 9). This similarity of response to selection is expected, however, since each is simply measuring the reduction in the genotypic variance in the loci of type B, those loci which affect both traits in the same direction. That the genotypic covariance is a measure of the genotypic variance of the common loci has been shown previously; all other covariances are expected to be zero. Also, the only loci affecting trait Y which are under selection pressure are those same loci which are shared. Thus, the decrease in . the genotypic covariance and in the genetic variance of Y are both a function of the change in gene frequency at the pleiotropic loci. The Genetic Correlation in the Truncated Distribution. The effect of linear truncation of X on the genetic correlation 127 again has been graphed for both experiments in the complete dominance model. The broken lines in Figures 4. l to 4. 3 and in Figures 6. l to 6. 3 represent the genetic correlation in the group selected to be parents for upwards and downwards selection , respectively. .55 I" ‘Q As in the additive model, truncation selection caused some decrease in the genetic correlation. When selection was by upper truncation, the amount of reduction in the genetic cor- ‘ 5.: relation was a function of both level of heritability and selection. The amount of decrease seemed greater than was observed in the additive model. The magnitude of the initial genetic correlation was also affecting the amount of decrease, a larger and more consistent reduction resulting when the initial correlation was 0. 75 than when 0. 25. When level of selection was high (b - 0. 2) and environmental variance was low (Figure 4. 3), the amount of decrease became very large when the initial genetic correlation was 0. 75. In fact, the genetic correlation in the selected group was generally about 0. 2 less than the correlation in the whole offspring generation. Again, however, when intensity of selection and heritability were both low, the reduction in the genetic correlation was fairly small, which can be expected when 80 per cent of the offspring are selected to be parents. 128 When selection was by lower truncation (Figures 6. l to 6. 3) similar results were obtained, the amount of reduction increasing as heritability increased. As observed in the additive model, level of environmental variance was more important than level of'selection in producing a decrease in the correlation in the selected group. The Estimates of Genetic Correlation Obtained from Phenotypic Covariances between Parent and Offspring. In the model of complete dominance two separate estimates of the genetic correlation were obtained from the covariances between parent and offspring phenotypes. However, because of the erratic results obtained in the additive model, the estimate for the complete dominance model using the geometric mean of the two covariances in both numerator and denominator was rejected if the two covariances in the numerator or denominator were of unlike sign. This condition occurred in the majority of cases. In general, the results obtained using the arithmetic mean of the two covariances in the numerator were equally as poor as those previously obtained for the additive model, whether selection was by upper or by lower truncation. Since to present all the results for both types of selection would be of little value, 129 a sample of results has been presented only for selection by upper truncation. These are shown in Table 3 as deviations of the genetic correlations computed by parent- offspring covariances, from the product-moment correlations of genotypic values. The same group of treatment combinations and examples for the first replicate in selected generations as for the additive model are presented. The asterisk beside some estimates indicates that the two covariances within the numerator and within the denominator were of the same sign. More estimates had covariances of unlike sign than not. In those cases where the correlation could be computed by the geometric means in both numerator and denominator , seldom did the correlation by geometric mean agree with that by arithmetic mean. Table 3 indicates that an interpretation of the results would be unwise, apparently random fluctuation prevents observing a predictable pattern. There is, however, the same tendency for the correlation to be underestimated as in the additive model. Of the 300 deviates presented in Table 2, 194 were negative, and the overall average deviation was - O. 40. 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