GENETIC AND PHYSICAL PROPERTIES OF F77 IN SALMON-ELLA PULLORUM M835 Thesis for the Degree of Ph. D. MICHIGAN STATE UNWERSITY PAUL W. STEFFLER 1971 This is to certify that the GENETIC AND PHYSICAL PROPERTIES OF F77 IN SALMONELLA PULLORUM M835 thesis entitled presented by Paul W. Stiffler has been accepted towards fulï¬llment of the requirements for PhOD. Date Februaryl 1972 Q7639 degreein Microbiology 5 Public Health Major professor â€" LIBRARY Michigan Sub University " “it “ HUM; & SUNS' BOOK BINDERY 3ND LIBRARY BINDERS gunneropr, «new: ABSTRACT GENETIC AND PHYSICAL PROPERTIES OF F77 IN SALMONELLA PULLORUM M835 BY Paul W. Stiffler Recent conjugation experiments with Salmonella pullorum indicated that the F—prime factor F—cysE+ rfa- EXEEf (F77) isolated from Salmonella typhimurium transfers the g, pullorum chromosome from one origin in two direc— tions (42). This origin was different than the origin in g, typhimurium from which F77 transfers only in the clock- wise direction. Therefore, experiments were performed to investigate and compare the genetic and physical properties of F77 in g. pullorum and g. typhimurium. In this study, however, the F-prime factor, F77, was found to transfer the g. pullorum chromosome from two different origins, both in the clockwise direction. The genetic loci studied appeared to be in the same relative position as they are in g, typhimurium. The primary origin of transfer was from cysE as O-cysE—ilv-thr-pro. The secondary origin of transfer was from a locus between pyrD and trp as O-trprgysB-his. The recombination Paul W. Stiffler frequencies for selected markers transferred from the secondary origin were 10 to 100 fold less than for selected markers transferred from the primary origin. The trpï¬gysB genes appeared to be inversed compared to those in S, typhimurium. The reduction in transfer of intact F77 factors, the increase in recombination fre- quencies of selected donor recombinants, and the stability of donor ability suggested that F77 converted from the autonomous state to a stable association with the donor chromosome. The donor carrying a spontaneous mutation in the cysteine gene of F77, designated F77gy§§f, transferred only from the secondary origin between pygg and Egg as O-trpécysB-his, with the same relative frequency as F77. This strain also displayed extreme stability of donor ability. Since the overall recombination frequencies for selected markers were 10 to 100 fold lower than expected for F-prime mediated chromosomal transfer, an experiment was designed to select a donor with increased transfer ability. It appeared that S. pullorum donors carrying F77 were homogeneous with regard to F77, suggesting that F77 was able to transfer the host chromosome from either origin of transfer. Electron micrographs of the S. pullorum recipient showed no unusual surface structures while the S, pullorum donors appeared to have at least 15 sex-pili per bacterium. Paul W. Stiffler The physical basis for the stability of F77 and F77gy§§f in Salmonella pullorum was determined. The F77 factor was isolated in the autonomous state from the donor M88300. F77 was no longer autonomous in a derivative of M88300, designated M8830, which transferred the chromosome at a higher frequency. The F77gy§§f in 8. pullorum M8831 and F77 in S, typhimurium 8A532 were isolated from the autonomous state. In 8. pullorum M8830, F77 appeared to exclude the PO-Z-like plasmid molecule, not phage P35, while F77gy§§f and phage P35 in M8831 did not. Neither F77 nor F77gy§§f nor phage P35 excluded the PO—l plasmid molecule. The F77 and F77gy§§f factors appeared to have sedimentation coefficients of 705 and molecular weights of approximately 51 x 106 daltons. It was concluded that F77 forms a very stable association with the chromosome of 8. pullorum, while F77cysE- does not. GENETIC AND PHYSICAL PROPERTIES OF F77 IN SALMONELLA PULLORUM M835 BY Paul W. Stiffler A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Department of Microbiology and Public Health 1971 This thesis is dedicated to my wife Lois ii ACKNOWLEDGMENTS I wish to acknowledge Dr. Delbert E. Schoenhard for his challenge, guidance, and encouragement in my scientific development during the course of this study. His interest in me as an individual is sincerely appreciated. I would also like to acknowledge Mr. Stuart Pankratz for his help and advice in preparing the electron micro- graphs appearing in this thesis and Dr. William L. Olsen for the helpful discussions in regards to the physical isolation of the plasmid DNA. During the course of this study, I was supported financially in part by a departmental assistantship. iii INTRODUCTION . LITERATURE REVIEW Part I. Conjugation. Fertility factor TABLE OF CONTENTS (E) Electron microsc0py High frequency recombination donors (Hfr) Intermediate donors II. F-prime Donor Strains Primary Feprime donors Secondary F-prime strains F—prime) Sex factor affinity locus (sfa) Aberrant donor strains derived from F-prime strains Chromosome-transfer mediated by F—prime factors . III. Sex Factor (F). IV. Specific pair formation . Effective pair formation. Chromosome and conjugal mobilization Chromosomal or conjugal factor transfer Recombinant formation. V. Extrachromosomal MATERIALS AND METHODS . Bacteria BacteriOphage Media DNA. iv fertil Stages of Bacterial Conjugation Donor Strains Harboring More Than One ity fertility Page ubNN \lflmm O 10 ll l4 14 16 18 19 22 25 28 28 28 35 RESULTS Part I. II. III. Iv. VI. Page Chemicals . . . . . . . . . . . 36 Buffers and dialysis . . . . . . . 36 Mutagenic treatment. . . . . . . . 36 Presence of F factor . . . . . Isolation and characterization of donor strains of 8. ullorum . . . . . . 41 Techniques of—bacteriaI mating . . . . 45 Linkage analysis—-scoring unselected markers . . . . . . . . . . . 47 Kinetic analysis-—time of entry of ' genetic markers . . . . . . . . 47 Cross streak method. . . . . . . . 47 Poisson distribution for selecting fertile donor strains . . . . . . 48 Lysogenization of S. pullorum M835 by phage P35 . . . . . . . . . . 48 Electron microscopy. . . . . . . . 49 Radioactive labeling and counting . . . 50 Preparation of bacterial lysates . . . 51 Dye-buoyant density gradient centri- fugation. . . . . . . . . . . 52 Sucrose density gradients. . . . . . 53 . . . . . . . . . . . . . . . 54 Counterselection of Donors Carrying F77. . 54 Origins of Transfer and Genetic Loci Mapped with Donors Carrying F77 . . . . 57 Matings using the donor M8830 . . . . 57 Zygotic induction . . . . . . . . 71 Spontaneous Mutation of F77. . . . . . 80 Matings using the donor M8831 . . . . 80 Determination of a Homogeneous or Heterogeneous Donor POpulation Carrying F77 and Selection for Donors with Increased Fertility. . . . . . . . . . . . 81 Poisson distribution test. . . . . . 81 Matings using the donor M8832 . . . . 85 Electron microscopy of 8. pullorum strains . . . . . . . . . . . 86 Evidence of F77 Converting to a more Stable Association with the Host Chromosome 97 Isolation and Characterization of Plasmid DNA. 0 O O O O O O O O O O O O 98 DISCUSSION 0 o o o g I o o o o o o I Part I. Counterselection of Donors Carrying F77. II. Origins of Transfer and Genetic Loci Mapped with Donors Carrying F77 . . . Matings using the donor M8830 . . . Zygotic induction . . . . . . . III. Spontaneous Mutation of F77. . . . . IV. Determination of a Homogeneous or Heterogeneous Donor POpulation Carrying F77 and Selection for Donors with Increased Fertility . . . . . . . Poisson distribution test. . . . . Matings using the donor M8832 . . . Electron microscopy of 8. pullorum strains . . . . . . . . . . V. Evidence of F77 Converting to a more Stable Association with the Host Chromosome . . . . . . . . . . VI. Isolation and Characterization of Plasmid DNA. 0 O O O O O O O O O O 0 SUMMARY . . . . . . . . . . . . . . LITERATURE CITED . . . . . . . . . . . vi Page 116 116 116 116 118 121 124 124 124 125 126 127 131 135 Table 1. 10. 11. LIST OF TABLES Characteristics of Salmonellae recipient strains . . . . . . . . . . . Characteristics of Sa1mone11ae F-prime strains . . . . . . . . . . . Chemicals and sources . . . . . . Growth requirements of pyrB, g, Q, E, and §_mutants . . . . . . . . . . Amino acid pools used for the determination of auxotrOphic mutants . . . . . . Partial characterization of 8. pullorum, g, typhimurium, and E. coli' . . . . Recombination frequencies and gradients of marker transfer in crosses with S. pullorum donors and recipients . . . Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8374 crosses . . . . . . Analysis of inheritance of cysteine auxotrOphy and streptomycin sensitivity of the donor in M8830 x M8374 crosses . Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8390 crosses . . . . . . Analysis of inheritance of unselected donor markers in recombinants from crosses with M8830 and the S. pullorum recipients M8391 and M8392 . . . vii Page 29 30 37 4O 42 44 58 59 62 68 72 Table Page 12. Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8104 crosses . . . . . . . . 77 13. Analysis of inheritance of unselected donor markers in recombinants from the M8831 x M8104 crosses . . . . . . . . 82 14. Analysis of inheritance of unselected donor markers in recombinants from the M8832 x M8374 crosses . . . . . . . . 87 15. Analysis of inheritance of unselected donor markers in recombinants from the M8832 x M8104 cross. . . . . . . . . 9O viii Figure l. 10. 11. 12. Partial LIST OF FIGURES linkage map of the 8. ullorum chromosome showing the reIative position of the genetic markers . . Partial linkage map of the S. typhimurium chromosome showing the relative position of the genetic markers . . . . . . Time of entry of the pyrD+ gene from M8810 x M883 and M8901 x M883 matings Time of entry of various markers from M8830 x M8374 matings . . . . . . Time of entry of various markers from M8830 x M8371 matings . . . . . . Time of entry of various markers from M8830 x M890 matings. . . . . . . Time of entry of various markers from M8830 x M8390 matings . . . . . . Time of entry of various markers from M8830 x M8392 (A) and M8830 x M8391 (B) matings . . . . . . . . . . . Time of entry of att P35+ from the M88301 x M881 mating. . . . . . . . . . Time of M8830 Time of M8831 Time of M8832 entry of various markers from x M8104 matings . . . . . . entry of various markers from x M8104 matings . . . . . . entry of various markers from x M8374 matings . . . . . . ix Page 32 34 56 61 65 67 7O 74 76 79 84 89 Figure _13. 14. 15. 16. 17. 18. 19. 20. 21. 22. Time of entry of various markers from M8832 x M8104 matings . . . . . Electron micrographs of 8. pullorum mating types . . . . . . . . . . . . Evidence for F77 converting to a more stable association with the host chromosome. . . . . . . . . . . Isolation of plasmid DNA from S. ullorum M835 derivatives and S. typhimurium . Neutral sucrose gradient of plasmid DNA from S. typhimurium. . . . . . . . Neutral sucrose gradient of plasmid DNA from 8. pullorum M835 derivatives . . . Neutral sucrose gradient of plasmid DNA from 8. pullorum M835 derivatives . . Neutral sucrose gradient of plasmid DNA from 8. pullorum and S. typhimurium . . Neutral sucrose gradient of plasmid DNA from S. pullorum and S. typhimurium . The partial linkage maps of 8. pullorum and S. typhimurium . . . . . . . Page 92 94 100 102 105 107 110 112 114 123 INTRODUCTION A conjugation system for Salmonella pullorum has been elucidated by Godfrey (42). His data suggest that the 8. pullorum chromosome exists as a single closed circular linkage map very similar to the linkage map of Salmonella typhimurium. The only obvious differences are an inversion of the trpjgysB genes and a possible transposition of the thr gene. Godfrey (42) observed that the S. pullorum donor M8809 carrying F77, an F-prime sex factor isolated from ‘S. typhimurium carrying the S. typhimurium chromosomal genes gysE+ rfa- pyrE+ (K. E. Sanderson and Y. A. Saeed, personal communication), appears to transfer the host chromosome from one origin in two directions. This origin is not as reported in S. typhimurium where F77 transfers the host chromosome in only the clockwise direction (K. E. Sanderson and Y. A. Saeed, personal communication). Therefore, it was decided that the biological and physical prOperties of F77 in S. pullorum and S. typhimurium should be investigated and compared. LITERATURE REVIEW Part 1 Conjugation The process of bacterial conjugation was discovered and described by Lederberg and Tatum in 1946 (59, 60). This process is responsible for the unidirectional transfer of genetic material which occurs upon cellular contact between two bacterial cells of Opposite mating types. The cell donating its genetic material contains a fertility factor termed F (21, 58). The recipient cell lacks F and is termed F“. During conjugation there is a low frequency 4 to 10-5) but of mobilization of chromosomal markers (10- a high frequency of F transfer (.5 to l) to F- recipient cells (5, 29, 46, 58). Other genetic elements exist which can transfer themselves infectiously and promote chromosome- transfer such as colicinogenic (C01) and resistance trans- fer (R) factors (26). Fertility factor (F). The F factor is an antonomous, covalently closed double strand DNA molecule (35, 36, 94) 6 daltons with an estimated molecular weight of 45 x 10 (35, 37). The F+ factor gene load is approximately 2% of the total bacterial genome and is large enough to carry 2 approximately 100 genes (99). Among the known functions coded for by F genes are: sexual transfer or conjugal fertility (45, 46, 58, 71, 99) sex factor replication (66, 99), superinfectious immunity (64, 99), F—pilus formation (13, 14, 71, 93), growth inhibition of certain phages (71), f+ antigen (74), and receptor sites for a group of male—specific phages (13, 14, 20, 26, 27, 67, 93, 99). Rupp and Ihler (82), Ohki and Tomizawa (69), and Ihler and Rupp (50) inferred that the unique labeled strand of Hfr or F—prime DNA transferred during conjugation is due to the asymmetric transfer of a specific strand of sex-factor DNA with a 5' nucleotide at the origin of transfer. Vapnek and Rupp (94) conclusively showed that only the denser strand of the sex factor DNA with a 5' end at the origin, is transferred to the recipient where its complementary strand is synthesized resulting in a covalently closed sex factor DNA molecule. These results show that DNA synthesis associated with mating occurs in both the donor and recipient cells (94). The rolling circle model of DNA synthesis (39) provides a working model for this asymmetric strand distribution. The sex- factor strand that is not transferred to the recipient during conjugation synthesizes its complementary strand in the donor during mating and also forms a covalently closed double-stranded molecule (94). Electron microscopy. The electron microscope is a _ valuable tool for visualizing the sex-pili (F-pili) formed on bacterial cells harboring the sex factor (F). Typical Salmonella typhimurium and Escherichia coli donors have 2—3 F—pili per cell. Donor specific DNA and RNA phage "stain" the F-pili by adsorbing to them (14, 27, 93). The DNA donor specific phage adsorb to the tip of the F-pili (20, 67) and the RNA donor specific phage ad- sorb to the sides of the F—pili (14, 20, 27, 67). The recipient cells have no sex—pili and therefore do not adsorb donor specific phage. High frequency recombination donors (Hfr). Inte— gration of the F+ factor into the bacterial chromosome results in an Hfr strain (46) which transfers its chromo— some in a specifically oriented and linear way. Due to random separation of the mating pairs the frequency of inheritance of donor markers in recombinants is highest if the marker is located near the beginning of the Hfr chromosome and lowest if it is near the end of the Hfr chromosome with the sex factor always the last marker to be transferred (47, 54). Early markers are transferred at a frequency of 10"1 to 10-2. Integration of F+ into the bacterial chromosome is believed to occur by reciprocal crossover between the circular F+ factor and the circular bacterial chromosome resulting in a linear insertion of the F+ factor into the bacterial chromosome (18). The bacterial chromosome remains circular, only slightly larger due to the presence of the integrated F+ factor. Curtiss and Renshaw (29) described two classes of F+ donors according to their ability to give rise to stable Hfr derivatives. Type II F+ donors fail to give rise to detectable frequencies of stable Hfr derivatives because the association between F and the chromosome is transient. They suggested three possibilities that may be responsible for the existence of Type II F+ donor strains. First, stable F integration may not occur either because a bacterial enzyme(s) specifically necessary for F integration is absent or because the F attachment site on the membrane is altered, which in effect prevents pair- ing and/or exchange between F and the chromosome. Second, stable F integration may occur without causing the expres- sion of the usual Hfr phenotype. Third, stable F inte- gration resulting in chromosome lethality may occur because of the absence of a functional bacterial enzyme(s) necessary for complete integration of F into the chromo— some or for the circularization of the F episome. Intermediate donors (Fjprime). Abnormal detachment of F from the Hfr state results in the removal of a seg- ment of the bacterial chromosome with it. These sex factors are called F-prime factors and can transfer the chromosome at a high frequency and with the same orien- tation as the parental Hfr strain (3, 51). Broda 33 31. (16) and Scaife (85) proposed that F— prime factor formation is the result of a reciprocal crossover between two chromosomal sites on either side of the integrated F or between a site in the integrated F and the chromosome. This model is essentially the reverse of Campbell's Model (18) of episome integration. A recipro- cal crossover between two chromosomal sites results in an F-prime factor carrying segments from both distal and proximal regions of the ancestral Hfr chromosome (16). A reciprocal crossover between the chromosome and inte- grated F factor results in F prime factors carrying seg- ments of the Hfr chromosome that are transferred proximally (62) or distally (11, 51, 62). Part II F—prime Donor Strains Primary F—prime donors. The data of genetic experi— ments demonstrate that cells in which F—prime factors arise are haploid and the genes deleted from the chromosome are now on the F—prime factor (11, 78, 85, 87). These F—prime donors are designated as primary F-prime donors (11) and they transfer the F-prime factor to F— recipients at nearly 100% efficiency but chromosomal genes not carried on the F-prime factor are transferred at random with frequencies 4 5 of 10‘ to 10’ per donor cell (11, 85, 87). The results of treatment of primary F-prime donor cells with acridine orange (AO) indicates that the F-prime factor carries a gene(s) necessary for cell survival. Consequently viability during AO treatment depends upon integration of the F'prime factor into the host chromosome (11, 16, 85, 87). Since the chromosome contains a deletion of the prrime segment, integration must take place at different regions on the bacterial chromosome by undergoing "non-allelic" pairing and recombination (48). This results in a class of aberrant donors which transfer the chromosome from new origins and possibly in the Oppo- site direction (11, 85, 87). Secondary Feprime strains. When a primary F-prime factor is transferred to a F- strain, partial diploidy results. These F-prime strains can mobilize the chromo- some with the polarity of the parental Hfr and are called secondary F-prime donors (3, ll, 51). The early papers describing F-prime factors (3, 51) actually were describ- ing secondary F-prime factors. Approximately 10% of the secondary F—prime donors transfer the chromosome while the other cells continue to transfer only the F-prime factor (3). Sex factor affinity locus (sfa). Adelberg and Burns (3) proposed that the infectious F+ factor has a low affinity for the chromosome and no preferential site of attachment. Following the rare event of Hfr formation, an F-prime factor is formed resulting in a primary F-prime strain (3). Following curing with AD the cell giving rise to this primary F-prime factor can be reinfected with F+ or the primary F-prime factor and these new donors are capable of relatively high frequency of oriented chromosome- transfer (3). This is due to the recognition of the site on the chromosome at which the F+ factor had originally integrated. They (3) inferred that this "sex factor affinity" (sfa) locus results by a reciprocal exchange during F-prime formation. Broda (15) suggested that there exists specific regions on the chromosome at which F+ inte- gration occurs to form Hfrs. Now, it is known that there are E. coli Hfrs with origins all around the chromosome indicating a random distribution of these sites for inte— gration (19, 92). There are Hfr strains of S, typhimurium and Salmonella abony with points of origin in at least 17 different regions (83). The distribution appears to be random over the 45—138 min region of the 138 min map but there is no report of Salmonella Hfrs with an origin in the 0 to 45 min region. There is an abundance of Hfr strains of E. coli in this region. There is no explanation for the numerous sites of chromosomal homology with F+ that allows the rare occur— rence of Hfr formation which arise by chance attachment of the F+ factor to the host chromosome (3). Aberrant donor strains derived from F—prime strains. Transposition and inversion Hfr strains resulting from primary F-prime factor re—integration into the host chromo- some are known (11). The transposition Hfrs result from re—integration in a different site. The direction of transfer can either be the same as the parental Hfr or in the opposite direction (11). Inversion Hfrs result from the inversion of the F-prime factors which re-integrate into their normal site and transfer the chromosome in the Opposite direction (11). A secondary F—prime donor can be constructed from mating a primary F—prime derivative of an inversion Hfr and a non-inverted isogenic F“ strain of the inversion Hfr. Therefore, a crossover between a non-inverted seg— ment on the F-prime factor and the homologous segment on the chromosome gives mobilization in one direction, and a crossover between an inverted segment on the F-prime factor and the non—inverted homologous segment on the chromosome gives mobilization in the other direction (11). The sites of reciprocal exchange in transposition Hfr formation and the polarity of exchange is definitely nonrandom (11). These sites of pairing are the result of mutual recognition between regions of fortuitously similar nucleotide sequences. The probability of pairing is a function of the extent of the similar sequences. The relative orientation of the nucleotide sequences involved is the determining factor for the direction of polarity. 10 Chromosome-transfer mediated by Fjprime factors. Chromosomal transfer mediated by F-prime factors requires a region of homology for synaptic pairing (76, 86). A reciprocal crossover occurs within this region of pairing. The denser single strand of sex factor DNA (94) breaks between its origin and terminus (86, 76, 94). The origin with the free 5' nucleotide is the lead end in chromosome- transfer (82, 69, 94). The terminus is the most distal segment transferred (3, 11). After specific pair formation (76, 77), there is a delay of 8 to 10 min for initiation of transfer of chromo- somal markers in F-prime strains compared to their analo- gous Hfr strains. The rate of chromosome—transfer is the same for both F—prime and Hfr strains. There are also secondary F-prime male strains known as Type I or Type II (76). Type I donors give 3 to 10 times as much F—prime transfer as chromosome—transfer, but Type II donors give higher frequencies of recombination for chromosomal markers and proximal F—prime markers. Type I donors change to Type II donors after storage at 5 C for several weeks followed by subculture in minimal medium (76). Type II donor strains must have a higher frequency of crossing over between the F-prime factor and chromosome. The F-prime donors of S. typhimurium carrying at least the trp Operon are similar to Type II males (84). 11 Independent transfer of both chromosome and F-prime factor occurs either extremely rarely or not at all (84), unlike the high frequency of independent transfer in E. coli (86). Part III Donor Strains Harboring More Than One Sex Factor (F) Clark (22) isolated a double male strain of E. 29;; K12 by crossing two Hfr strains. The resulting recombinant is a haploid monokaryotic Hfr containing two chromosomally integrated sex factors. This strain is viable, stable, and transfers its genetic material to recipients in the form of two non-homologous linkage groups. Any given cell appears to transfer one or the other linkage group, but not both. Echols (34) reported that an F—prime strain harbor— ing Fgglf excludes or destroys a superinfecting Figgf episome. Maas (64) isolated an Hfr recipient that com— pletely excludes a superinfecting Figgf episome. Bastarrachea and Clark (8) experimentally synthesized a strain of E, 32;; K12 harboring three sex factors. The donor is an F-30 merodiploid and the recipient is an F- phenocopy of the strain harboring two integrated sex factors (22). Chromosome-transfer is detected from both origins due to the two integrated F factors in addition 12 to the autonomous transfer of the F—30 merogenote. F-30 is lost spontaneously. Maas and Goldschmidt (65) isolated a recombination deficient (EEEE) Hfr strain containing a mutation most likely in the integrated F factor which permits the co- replication of an integrated and a free F factor. The F factor is F'lgg. They did not find a wild type strain harboring two free F factors or one free and one inte— grated. Palchoudhury and Iyer (75) found a chromosomal mutation (DNA-ts43) that leads to termination Of DNA synthesis at 42 C which permits the cohabitation of two F-prime factors at the permissive (31 C) temperature. This lack of entry exclusion and intracellular incompatibility of one F—prime factor for another may result from an alteration in the membrane for the membrane—replication complex which is unstable at 42 C. Joset 23 El- (56) isolated an Hfr strain following ultraviolet (UV) treatment Of an Hfr strain that transfers the chromosome in the Opposite direction and from a new origin. The Ra-l Hfr strain also gives rise to RaF+ (F+) cells spontaneously (61). Further experiments by Low (61) indicate that the Ra-l Hfr culture actually gives rise to the cells transferring from the second site (Ra-2 Hfr) by a detachment Of the F from its Ra—l site of integration and reassociation at the Ra-2 origin. Certain Ra—Z Hfr cells can transfer the chromosome like 13 the Ra-l Hfr. The mating properties Of the normal F+ in cured RaF+ cells, RaF+ in a normal F- cells and an F+ revertant from the Hayes Hfr in cured RaF+ and normal F- cells are those of the strains now harboring them. Low (61) concluded that the E. gal; K12 RaF+ strain (including Ra-l and Ra-2) carries a normal sex factor but possesses chromosomal irregularities which give rise to the mating behavior characteristic Of the Ra system in which there is a preference Of RaF+ to integrate into one Of two specific chromosomal loci and only rarely in other sites around the chromosome. There apparently exists a segment Of chromosomal DNA having sufficient homology with the F factor to allow reciprocal crossover and integration. Kahn (57) presented an elaborate scheme for the evolution Of a chromosomal locus responsible for two directional chromosomal transfer from one origin based upon a tandem duplication Of Col V in the host chromo- some. Devries and Maas (33) described the isolation Of double male strains in E. gel; by mating various F—prime donor strains and a EEEQI Hfr recipient and selecting for recombinants which can act as early donors Of both markers. These recombinants may be mutants in which the incompati- bility barrier has been lost or which have two integrated sex factors. Further analysis indicates that all Of the selected recombinants are indeed double Hfr strains. The 14 F-prime factor integrates into a region Of the chromosome homologous to the chromosomal genes carried by the F-prime factor. Insertion is in the same direction as the F-prime mediated chromosomal transfer Of the parental strain. An exception is the Observation Of a strain which transfers the chromosome in the Opposite direction. This means that the orientation of chromosomal genes on the episome is Opposite to that Of the corresponding genes on the chromo- some. It makes it unlikely that a reciprocal crossover takes place between homologous genes Of chromosomal origin. The insertion process has a high degree Of specificity which is evident by the constancy Of the resulting double Hfr strain, even in the absence of an intact bacterial recombination system (33). Part IV Stages of Bacterial Conjugation Specific pair formation. De Haan and Gross (31) defined specific pair formation as a donor-recipient cell union that is stable during gentle dilution. Curtiss 23.2l' (27) published electron micrographs Of presumed specific pair formation. The F+, F-prime and Hfr donor cells possess F-pili (14) which react with specific f+ antiserum and are the sites of attachment Of F donor- specific phage. It is generally believed that the presence Of donor pili is essential for specific pair 15 formation (13, 14, 27, 93). It can be seen in electron micrographs that donor—specific RNA phage which attach to the sides Of the sex—pilus outline the F-pili that appear to be making contact with the recipient cell (27, 93). The removal of F-pili by blending results in the temporary loss of ability for the donor to form specific pairs but is regained upon resynthesis Of the F-pili (13, 27). Curtiss EE.E$- (27) suggested that donor cultures which are grown anaerobically prior to mating have a higher mean number of F—pili per cell, longer F-pili, a higher probability Of forming specific pairs with F- cells and a faster rate Of initiation Of chromosome- transfer than cells grown aerobically. A rich medium is superior to a completely synthetic medium (27). During periods of starvation, amino acid auxotrophic donor cells lose their F-pili, the ability to adsorb donor—specific phage, the ability to form specific pairs with F- cells and they become more recipient—like (27). Certain transfer— defective mutations affect donor pili formation; these mutants cannot form specific pairs or transfer genetic material to recipients (l, 70, 71). Therefore, it appears that the F-pili act like grappling hooks and are necessary for specific pair formation with recipient cells (7). Normal donors do not mate with DNA-deficient minicells isolated from F+ or F-prime minicell producing strains (24). The fact that a class Of donor pili—less mutants 16 have recipient abilities like the donor from which they arise (70) implies that the mere presence Of F-pili is not sufficient to prevent donor:donor specific pair for- mation (26). From studying another class Of donor pili- less mutants which have recipient ability like a normal recipient strain, Ohtsubo (70) localized single mutations of the F-factor which apparently affect the synthesis Of a regulatory product that permits the synthesis Of both donor pili and some other product necessary for preventing donor:donor matings. Another explanation for why donor cells form specific pairs with recipient cells may be that the donor cell possesses a cell surface structure that is responsible for donor exclusion which is nonantigenic or associated with the cell membrane (26). The only known antigenic struc— tures that differ between donors and recipients are the f+ (donor pili) and i+ (somatic pili) antigens in donors (26). Specific pair formation can occur in the absence Of all energy metabolism on the part Of either or both parents (30). Effective_pair formation. Effective pair formation is defined as the process by which specific pairs estab- lish cellular connection through which genetic material can be transferred (26). The nature Of the conjugation bridge has not been established unequivocally. The direct relationship Of donor ability and the presence Of l7 vaili (13, 14, 27, 28, 93) indicates that the F-pili play some vital role either as the conjugal bridge or in the formation Of the conjugal bridge. Brinton 22.31' (14) suggested that the F-pili are very similar tO non-sex specific I—pili with respect to gross physical structure. The F—pili have an axial hole of 2.0-2.5 mu in diameter, running the length of the. pilus, thus providing the space for the passage Of DNA through the pilus. During conjugation there does not appear to be significant transfer of any material other than DNA (44). However DNA has not yet been isolated in F-pili. Rosner 25.21' (81) found no detectable transfer of B-galactosidase during matings between F+ and F- cells. Silver (89) and Silver 22.2l (90) found essentially no RNA or protein transferred during conjugation. Ohtsubo (70) isolated donor-defective mutants possessing F-pili that are able to form specific pairs. This argues for genetic functions Of the F factor that may be necessary for effective pair formation and/or for chromosome or F—factor transfer (26). Curtiss (26) prOposed a model for effective pair formation based on available data and some hunches as follows. After specific pair formation involving an interaction between the recipient cell surface and the tip of a donor pilus, the pilus is withdrawn into the donor cell, with the expenditure of energy, so as to 18 achieve wall-to-wall contact between donor and recipient cells. Formation Of a conjugation tube can then occur either by use of a component Of the donor cell wall or membrane, or possibly by the hole in the donor cell sur— face remaining after withdrawal Of the pilus. Chromosome and conjugal fertility mobilization. This step prepares the circular donor chromosome and/or sex factor for linear sequential transfer. This process may occur during specific and effective pair formation or after effective pair formation (26, 27). Jacob and Brenner (52) and Jacob 32 3E. (53) prOposed that chromosomal mobilization is initiated in the donor parent upon receiving a contact stimulus from the F- parent. They proposed that chromosome-mobilization is related to vegetative chromosome replication which can be controlled by two chromosomal loci. One locus specifies the synthesis Of an initiator probably a protein (53), and the other a replicator that recognizes the initiator and controls the direction of sequential chromosome— replication. They apply this two loci replication control model to autonomous F factors as well and suggest the simultaneous loss Of these functions when F integrates into the chromosome. In their model they prOpose that the contact stimulus received from the recipient parent triggers the synthesis Of the F-specified initiator, which acts to cleave the circular chromosome at F allowing for the linear sequential transfer Of the DNA (52, 53). 19 However their model (52, 53) is based on the transfer Of double stranded DNA from the donor to the recipient. The rolling circle model for DNA replication Of Gilbert and Dressler (39) suggests the transfer Of a single strand Of DNA resulting from a cleaving Of a single strand at the site of F integration. The sex factor can be inserted into the E. 93;; chromosome with the origin facing either direction (69, 82). Therefore, depending on the orientation Of the inserted sex factor, either strand Of the E. 99;; chromosome can be attached (to a particular strand Of F. Chromosomal or conjugal fertility factor transfer. Chromosomal and conjugal fertility factor transfer is the process of transferring the genetic material from the donor to the recipient cell. Currently it is believed that only a single strand Of DNA is transferred during conjugation (12, 24, 39, 44, 69, 82, 94). The rolling circle model for chromosome replication Of Gilbert and Dressler (39) is an ideal explanation for chromosomal transfer during conjugation. They postulate that repli- cation begins by nicking one strand Of the chromosome at a specific point. This may be at the origin of the autonomous or integrated sex factor tOO. Then the Open strand with the exposed 5' terminus attaches to a cell membrane site for replication or to a site at the con- jugal bridge for transfer. As this strand (positive) is 20 peeled Off and transferred, it is replicated in the recipient. The nontransferred strand (negative) remains closed. The positive strand is transferred to the recipient as a template and is replicated as short pieces by 3' to 5‘ growth of DNA and joined by the ligase. The negative strand receives its complementary strand simultaneously during the peeling away of the old complementary strand in the normal manner. Curtiss EE.§£° (26, 28) described experiments utilizing recombinant production and zygotic induction of prophage from different combinations of donor and recipient strains which can or cannot ferment the avail— able carbohydrate source to determine that chromosome~ transfer depends upon active metabolism in the donor to initiate chromosome-transfer and active metabolism in the recipient to control the rate of chromosome-transfer. The conclusions of Bonhoeffer and Vielmetter (12) that chromosomal transfer is independent of DNA synthesis in the Hfr parent and dependent on DNA synthesis in the F_ parent is at odds with other published data and con- clusions on the role of DNA synthesis during bacterial conjugation. From the use of DNAts mutations in F+, F', Hfr donors and minicell (6) recipients, it is known that the amount of DNA synthesized in the donor parent is equal to the amount of DNA transferred to the minicells (R. Curtiss, R. L. Seigel, D. R. Stallions, and G. Van 21 Denbos, Bacteriol. Proc., P. 35, 1970). Therefore, DNA transfer during conjugation is accompanied by DNA syn— thesis in the Hfr parent and is not dependent on DNA synthesis in the F- parent. They believe that this DNA synthesis in the donor during transfer is under separate control from vegetative chromosome replication. Stallions and Curtiss (91), by using DNAts mutants, concluded from a reinvestigation of the experiment of Bonhoeffer and Vielmetter (12) that chromosome-transfer from donors to recipients unable to replicate DNA at 42.5 C during vege- tative growth occurs at normal frequencies when the mating is conducted at 42.5 C. Therefore some stage in haploid recombination formation is adversely affected in DNAts recipients mated at the temperature restrictive for DNA synthesis (91). Marinus and Adelberg (66) studied different DNAts mutations located in at least two different genes on the chromosome with one of the 8 mutations present in each of 8 mating pairs. They (66) demonstrated that genetic transfer occurs normally in DNAts F“ strains mated at 42.5 C. Therefore, DNA synthesis in the F“ parent is not required for genetic transfer. They concluded that vegetative replication of the chromosome and transfer replication of F are separate processes with the former requiring at least two gene products which are non- essential for the latter (66). Q _ 0‘ MAC 5 e"! '3‘ P “M 51'; t0 re Ci PI 22 Curtiss 2E.3l?(28) and Cohen 35.3E. (24) showed that DNA synthesis in the Hfr donor can force transfer of several percent of the donor chromosome to the recipient. Also F and short F~prime factors can be transferred. However, effective homologous pairing between the re— cipient chromosome and episome is necessary for transfer of longer F-prime factors and for chromosome-transfer mediated by F and F—prime factors (28). The F‘ parent winds in the donor chromosome with the expenditure of energy (28). This process ensures pairing of homologous regions of the donor and recipient for recombination. Recombinant formation. Recombinant formation re— quires synaptic pairing of homologous regions of the donor and recipient chromosomes following chromosome—transfer to enable crossovers to take place which are necessary for the integration of transferred markers. This is followed by reassortment of the donor and recipient genetic information which yields new combinations of genetic information. Finally there is segregation of recombinant chromosomes from nonrecombinant chromosomes. Pittard and Walter (79) and Curtiss g: il- (28) reported that the homologous pairing of donor and recipient chromosomes is necessary for the initiation of recombinant production. 23 The coinheritance of two donor markers in the same recipient depends upon the distance in transfer time be- tween them. Linkage of less than 50% indicates a random coinheritance of the two markers (55). There is random coinheritance of proximally unselected markers that are more than 15 to 25 min of transfer time from the selected distally transferred marker. As the distance decreases, the frequency of coinheritance approaches 100%. Also, the coinheritance of distally transferred unselected markers with proximally transferred selected markers drops below 50% (or random linkage) when more than ten minutes of transfer time separates the two markers (55). Pittard and Walker (79) and Glansdorff (40) con- cluded that genetic exchange almost always occurs near the origin of F-prime or Hfr chromosome transfer and the only significant exclusion in inheritance of donor markers occurs with markers less than 1 min of transfer time from the origin. Glansdorff (40) also found that two or more very proximally located markers may give the idea of being transposed when they are actually pseudotranspositions based on their kinetics of transfer. Several models have been proposed to explain this low recovery of very early markers (26, 38, 40, 79). Walker and Pittard (97) reported that low recovery of very early donor markers in recombinants is not caused by the presence of sex-factor DNA at the leading end of donor DNA transferred during conjugation when using an 24 isogenic Hfr phenocopy as the recipient. They found that recombination frequencies for a selected allele is as low as when a female strain is the recipient. These results do not rule out the possibility that a piece Of sex factor DNA forms the lead end or origin of the DNA transferred by conjugation. None of the recombination defective (£397) mutants studied has an effect on chromosomal mobilization and transfer in Hfr donors, but in the recipient strain they are unable to perform the functions necessary for haploid recombination (7, 100). The model of recombinant formation proposed by Curtiss (26) based on the available data rules out a OOpy- choice type of recombination event. He proposed that the double stranded recipient chromosome undergoes regional melting at sites of single strand breaks to separate the complementary strands. The single stranded donor DNA then interacts with the recipient chromosome at these sites of regional melting. The effective homologous pairing may occur then by insertion of a portion of the single stranded donor DNA in place of the like strand of the recipient chromosome. Breakage then occurs in the other strand to produce a segment of inserted single stranded donor DNA. Synthesis of the strand complementary to the integrated donor strand proceeds in a 3' to 5' direction along the template, and when it is completed covalent bonds form 25 between the ends of the polynucleotide strands. The re- sulting structure contains regions composed of parental donor and recipient DNA synthesized prior to mating with the donor segment composed of one strand synthesized prior to mating and one strand synthesized during recombination. The majority of the recombinant chromosome is the double stranded recipient DNA synthesized prior to mating. Part V Extrachromosomal DNA Novick (68) defines "extrachromosomal element" as any hereditary unit that is physically separate from the chromosome of the cell and an independent replicon. Classifying an extrachromosomal element as either an episome or plasmid has met with considerable controversy recently (49, 68). Hayes (49) prefers to classify extra- chromosomal elements as transmissible and nontransmissible plasmids. Transmissible plasmids include those extra— chromosomal elements which can transfer themselves via conjugation and those which can transfer genetic units not linked to themselves. Nontransmissible plasmids cannot bring about their own transfer but can be trans- ferred in association with a sex factor. Many of the different transmissible plasmids have been isolated and characterized. These plasmids have all been isolated as covalently closed double stranded DNA 26 molecules. To facilitate direct isolation of the plasmid from its natural host, Bazaral and Helinski (10) adapted the procedure of Radloff _e__t_ Si' (80) employing ethidium bromide (EtBr) in a preparative CsCl density gradient. Radloff £5. 11;. (80) used the dye EtBr, which intercalates between the base pairs of a double stranded DNA molecule causes a 12 degree unwinding of the helical structure. Waring (98) reported that the maximum amount of ethidium bromide that can bind to unwinding double stranded DNA is one molecule per every four or five base pairs. The supercoiled covalently closed plasmid molecules bind much less EtBr at saturating concentrations. Therefore, the unwinding double stranded DNA, both open circular and linear forms, bind much more dye resulting in a decrease in buoyant density. When the DNA-dye complexes are centrifuged to equilibrium in a CsCl density gradient, the supercoiled covalently closed plasmid molecules will hand lower in the tube at a greater density than the open Circular and linear forms. Neutral sucrose gradients are used to determine the Sedimentation coefficients of supercoiled DNA molecules ( l7) . When these supercoiled molecules are centrifuged at pH values greater than 12, the molecules sediment at a f7‘as.ter rate. This is due to the more compact structure of the denatured supercoiled molecules (95) . 27 Bazaral and Helinski (10) have determined that ColEl supercoiled DNA has a molecular weight of 4.6 x 106 and a sedimentation coefficient of 235 in neutral sucrose. Olsen and Schoenhard (73) showed that the PO—l and PO-2 Ellasmids of Salmonella pullorum M853 have molecular weight (Df 1-5 x 106 and 45 x 106 daltons respectively and sedi- Huentation coefficient in neutral sucrose of 175 and 655 r e spectively . MATERIALS AND METHODS Bacteria. Salmonella pullorum strain M835, desig- nated wild type, was selected from the stock collection of Dr. D. E. Schoenhard as the prototype organism from which auxotrophic recipient strains were derived (Table l) . The donor strains used for this investigation are listed in Table 2. E. pullorum strain M853 was used as an indicator Strain for the zygotic induction experiment and testing lYa’sogenic derivatives of M835. Escherichia coli AB312 Was used for prOpagation of M82. The genotypic and phenotypic symbols suggested by Demerec e_t_:_ El- (32) were used. The partial linkage maps of E. pullorum and E. EXEhimurium depicted in Fig. l and Fig. 2 respectively, Show the relative position of the relevant markers and the EDCDint of origin and direction of transfer of the donor strains referred to in this investigation. Bacteriophage. The temperate phage P35 described by Olsen (72) was induced from E. pullorum M835 by zygotic induction. M82 was the donor-specific RNA bacteriophage. Phage were propagated and titered by a modification 0 f a procedure described by Adams (2) . Log phase bacterial 28 EOHHOEHnmwu maawcoeamm u «m “SOHOHHOQ maamcoEHmm u mzm 29 acmumecmm .m .x mnmum mmmnums ammuxm mmvaam moams mJMMI mums» Hmmmo Humww «cams cams mlmmw mn>Hw Hmmso Himww Namz Hams Haupm mu>aa Human Hmew cams Amaze mmmz mumae Hausa Hmmso Hwaw mmmz Amaze mmms House Houwm Hmmxo Himmw hams Hams Housm Hmmxm Himmw mmmz mam: III Hmmxo HJmmH Hams ahmms x ommms Hmmxo Himmw anon mewm mamms 45mm: x ommmz Hmmwo Huwrw HJmMI Himwm Hmmmz ekmmz x ommmz Hmmmw ambit anus» Himmm ommms mmmms alam HJwHH Himmw Himml Hmem eemmz 58mm: III waww stuns Himwm mewm Humms 58mm: drama Hu>aa slush Himml Human anuum mmmms enuncoosom .m .a aroma Humxm Hmem mmmz .mmu no GHOHMO mumxuma owumcom ucm>maom .Oc cï¬muum m.mcflmuum unmwmaomu OMHHmcoEHmm mo mowumwuouomuwao .~ w~&m& 3O Esfluseflnmmu maamcoEHmm n <m “EDHOHHOQ waamcoï¬amm u m2m acmumecmm .s lemme +muxm sees +mmwwtm\ommmmxo mmvuums mmmam omms x ommmz lemme +muxm ummu +mmwosm\anuum mu>Hfl Hmmxw Husma scams Aucmeflummxm coauoofluumflv commeomv ommmz Abbey +muwm new“ +Mmmmum\aouwm Hmmxo asses Nmmms Acowumuse . msomcmucommv oommmz AlmmNOnnmv mmuNm mmmu tumultM\HQuNm HmmNO Husma Hmmmz oommms lapse +mumm new“ +mmwoum\floumm Hmmwm Husma ommms mmms x mmmmm Akkmv +muxm new“ +mmmoum\aauxm Hmmxo Husma oommms nomms lanes +muusm\~u up «swan Husmfl Hemmo Humuo oamms .mmu no cflmwuo mumxume oaumcmm ucm>mamm .Oc cwmuum m.mcwmuum weï¬umum mmHHchEHmm mo moeumï¬umuomumso .N manna 31 Figure 1. Partial linkage map of the E. ullorum chromo- some showing the relative position of the genetic markers. The F-prime factors are indi- cated in the expanded portion. 32 - + + - pyrE+ rfa cysE F77 cysE rfa pyrE+ N pro ilv thr trp cysB trp F71 his Figure l Figure 2. 33 Partial linkage map of the E. typhimurium chromosome showing the relative position of the genetic markers. The F-prime factors are indi— cated in the expanded portion. 34 thr + £33'IE r fa- ilv pro 4. CYSE rfa F7 7 cysE cysB tr? F71 tr his p Figure 2 35 cells in aerated L broth were infected with phage at a multiplicity of infection (m.o.i.) of 0.1. The infected cells were incubated 18 hr with aeration by shaking at 37 C. One ml of chloroform was added to the culture, followed by vortexing the culture for one—half min. The chloroform treated cells were then reincubated at 37 C with aeration by shaking for 30 min. The bacterial debris was then removed by centrifugation for 10 min at 8000 x g. The phage in the supernatant fluid were stored over chloro- form at 4 C. The phage were titered by assay of the number of plaque forming units (pfu) per ml by the soft agar over— lay technique (2). EEEEE. The E minimal medium described by Vogel and Bonner (96) was supplemented with L-amino acids at a final concentration of 20 ug/ml and D-glucose (Pfanstiehl) at 0.4% (w/v) for the growth of amino acid auxotrophs. L broth and L agar (1.5% Difco agar) containing 10 g Of tryptone (Difco), 5 g of yeast extract (Difco), and 10 g of NaCl per liter of deionized distilled water were employed for routine cultivation. When used, dihydrostreptomycin sulfate was added to a final concentration of 1200 ug/ml in minimal media. Bacto SIM medium (Difco) was used to detect sulfide and/or indole production. For radioactive labeling, the bacteria were grown overnight in TCGU broth containing 0.1 M tris (hydroxy- methyl)aminomethane(Tris)—hydrochloride pH 7.4, 0.4% 36 vitamin—free casamino acids, 25 ug/ml of deoxyadenosine, 7 ug/ml uridine, and 0.4% glucose which was autoclaved separately and added prior to use. When labeling with 14C-thymidine, 25 ug/ml of deoxyguanosine were added in addition to the TCGU broth. Bacterial cultures were checked for specific anti- gens with antisera (Difco, Salmonella O antiserum group D factor 9 for E. pullorum and Difco, Salmonella H anti- serum i for E. typhimurium). Chemicals. The general chemicals used were reagent grade. Special chemicals are listed in Table 3. Buffers and dialysis. TM buffer (Tris-maleic) was made in deionized, distilled water which contained: 0.05 M tris (hydroxymethyl)aminomethane(Tris)-hydrochloride and 0.05 M maleic acid, pH 6.0. The general buffer TES was made in deionized, distilled water which contained: 0.05 M tris (hydroxymethyl)aminomethane(Tris)-hydrochloride, 0.005 M (ethylenedinitrilo)tetraacetic acid (EDTA), and 0.05 M NaCl, pH 8.0. Dialysis was performed using sterile dialysis tubing which had been boiled in 0.5 M EDTA pH 7.0 for 10 min, and then autoclaved in 0.05 M Tris, pH 8.0. Mutagenic treatment. The uridine mutation was in- duced by N—methyl-N'nitro-N—nitrosoguanidine (NTG) follow- ing the method recommended by Adelberg, Mandel and Chen 8 (4). Five ml of logarithmic phase cells (2 x 10 cells/ ml) growing in E minimal broth were collected on a 37 Table 3. Chemicals and sources. Chemicals Source N-methyl—N'—nitro—N— nitrosoguanidine (NTG) Ethidium bromide (EtBr) Lysozyme (crystallized egg white) Cesium chloride (CsCl) Bovine albumin fraction V (BSA) Brij 58 Antisera 2,5(diphenyloxazole)—benzene (PPO) 1,4,-bis 2(4-methyl—5- phenyloxazole)-benzene (POPOP) Aldrich Chemical Company Milwaukee, Wisconsin Calbiochem Los Angeles, Calif. Armour Pharmaceutical Co. Kankakee, Illinois Schwarz—Mann Orangeburg, New York Pentex Incorporated Kankakee, Illinois Emulsion Engineering Co. Elk Grove, Illinois Difco Laboratories Detroit, Michigan Packard Instrument Co. Downers Grove, Illinois 38 millipore filter and resuspended in 10 ml of TM buffer pH 6.0 containing 100 ug of NTG/m1. The suspension was incubated at 37 C for 20 minutes with aeration. A 1 m1 aliquot portion was filtered to remove the excess NTG, and then resuspended in 10 ml of E minimal broth supple— mented to permit the growth of uridine mutants. The suspension was incubated with aeration for five gener- ations. Enrichment for the desired mutant was by the penicillin treatment described by Gorini and Kaufman (43). Ten ml of the NTG treated suspension (5 x 108 cells/ml) were centrifuged and the pellet resuspended in 1 m1 of E minimal broth. A 0.1 ml aliquot portion of the re- suspended pellet was added to 10 m1 of E minimal broth supplemented with 10% sucrose, 0.5% glucose, and 0.01 M M9804 and the growth requirements of the parental cell type. The culture was grown with aeration for 3 hr followed by the addition of 2000 units/ml of Penicillin G. Additional incubation was done at 37 C without aeration for 4 hr until approximately 50% of the cells had become Spheroplasts. Then the action of penicillin was stopped by chilling the culture in an ice bath. The culture was centrifuged and the pellet resuspended in 10 m1 of E minimal broth properly supplemented to permit growth of the uridine mutants. Following the second cycle of Penicillin enrichment, the cells were plated on L agar Plates and the uridine mutants isolated by replica plating 39 to selective media. The uridine mutants were then repli- cated to selective media on which they were characterized (101) as shown in Table 4. The histidine (EEEeS) and arginine (Eggfl) mutations were induced in M883 by NTG according to the method de— scribed by Glover (41). Five ml of logarithemic phase cells (2 x 108 cells/ml) growing in L broth were centri— fuged and the pellet resuspended in 5 ml fresh L broth. NTG was added to a final concentration of 30 ug/ml and the suspension allowed to incubate at 37 C for 15 min with aeration. The cells were washed twice in E minimal broth and resuspended in 5 ml of E minimal broth. A 0.1 ml aliquot portion was added to 5 ml of L broth and incubated 37 C overnight with aeration to allow expression of the mutations. The cells were pelleted, washed in E minimal medium and resuspended in E minimal broth supplemented with the amino acid requirements of the parental strains and allowed to incubate at 37 C for 3 hr with shaking. Enrichment for the induced mutations was by the penicillin treatment of Gorini and Kaufman (43) as previously de- scribed. Following the completion of the penicillin enrichment treatment the cells were iced, pelleted by centrifugation in a Sorvall RC-2 centrifuge at 5 C and resuspended in 3 ml of E minimal broth. One—tenth ml aliquot portions Of diluted resuspended cells were plated on L agar plates to permit the growth of approximately 200 colonies per plate. 40 Table 4. Growth requirements of pyrB, E, E, E and E mutants. Carbamyl Dihydro— Uracil aspartic orotic Orotic or Locus acid acid acid Uridine (CAA) (DHOA) (OA) (U) pyrB + + ++ +++ C - + +++ +++ D — - +++ +++ E - — - +++ F - — - +++ 41 These isolated colonies were picked to fresh L agar plates and spread in patches to serve as master plates for replica plating to pools shown in Table 5 for the identifi— cation Of the induced mutations. The EEETI mutation was further studied and identi- fied as EEEEl- The mutant strain grows on citrulline but not on ornithine. Presence of F factor. The method of Schleif (88) was used to test for the presence of the F'prime sex factor. The donor specific RNA bacteriophage M82 was streaked down the center of an L agar plate and allowed to dry. The bacteria being tested were streaked across the bacteriOphage. Bacteria harboring F showed a greatly reduced number at the intersection of the M82 streak; F- cells showed no reduction in number. Isolation and characterization of donor strains of 8. pullorum. The F77 factor was isolated from E. typhi- . . - + murium by Sanderson and carries the cysE+ rfa pyrE genes. The origin and direction of chromosome—mobilization by F77 in E. typhimurium are shown in Fig. 2. The F77 factor was introduced into E. pullorum by mating E. typhimurium SA532 with M883. Log phase cultures of the donor (1 x 108 cells) were mixed with the recipient (l x 108 cells) and impinged upon a millipore membrane filter. The filter was removed to pre—warmed L agar plates at 37 C. The membranes were then inserted into 42 Table 5. Amino acid pools used for the determination of auxotrophic mutants.a Pool number 1 2 3 4 5 phenylalanine leucine serine glutamate 6 tryptophane isoleucine glycine arginine 7 histidine valine cysteine proline uridine 8 aspartic acid methionine threonine lysine a . . . Each pool was supplemented with leuc1ne and cysteine. 43 either 1 ml of E minimal broth with glucose and agitated in fluted test tubes on a Vortex Jr mixer to remove the mating pairs from the membrane and interrupt the mating, or placed into 1 ml of E minimal broth plus glucose in a 13 x 100 mm test tube and vibrated for 15 sec in an apparatus described by Low and Wood (63). The mating mixture was then diluted 1:3 in E minimal broth and 0.1 m1 aliquot portions were dispensed into 3 ml L soft agar overlays and poured over the surface of supplemented E minimal agar plates to allow growth of only the desired recombinant type. After incubation at 37 C for 96 hr, the recombinants were re—streaked on the same kind of selective medium and reincubated at 37 C for 72 hr. Isolated colo— nies were then picked and inoculated into 3 ml of L broth and incubated at 37 C for 12 hr with aeration and then tested for sensitivity to M82 phage. The tubes contain- ing M82 sensitive bacteria were then subcultured into SIM media to detect hydrogen sulfide, or indole production. The cultures appearing to be E. pullorum were then streaked for isolation on L agar and incubated at 37 C for 24 hr. Individual colonies were then tested for their response to Group D antisera and auxotrOphic requirements. The donor M88300 resulted from these manipulations. A EPartial characterization of E. pullorum, E. typhimurium and E. coli is shown in Table 6. 44 I I + I AHOO .m + I I + Eseuoeflsmmu .m I + I I Esuoaaom .m H msoum m Houomm a moonm m m mHHwOOEHmm o maaocoEHmm waoocfl m m mooscoum moosooum Emflcmmuo Esummï¬ucm ou omOOQmmm .HHOO am can Esï¬usaflnmwu xm .EOHOHHOm nm mo OOHDMNHHmuomumno aneuumm .m manna 45 A routine check of the parental auxotrOphic require- ments, M82 sensitivity and donor fertility of M88300, revealed an isolate with increased fertility, designated M8830, and an isolate with a cysteine requirement, designated M8831. M8901 is a recombinant isolated from a mating of M8830 x M890. All donor strains constructed during this investi- gation were stable with respect to the F-prime factor when stored on L agar plates for periods up to 4 months at 4 C. L broth cultures were less stable when stored at 4 C for over 3 months.' Therefore, spontaneous curing of the F— prime in E. pullorum donors was not a problem. Techniqges of bacterial mating. A modification of the millipore filter matings described by Godfrey (42) was employed for routine interrupted matings. The donor and recipient cells were grown overnight in L broth at 37 C with aeration. Following a 1:20 dilution into fresh L broth, the recipients were incubated at 37 C for 3 hr with aeration and the donors incubated at 37 C for 3 hr with— out aeration. The mating mixture contained a ratio of l donor to 10 recipients at a final concentration of l x 108 donors. The mating mixture was impinged upon pre—wet Inillipore HA 0.45 u, 25 mm sterile filters. The zero time was taken when the cells were drawn onto the milli- pore filter. The filter was placed immediately upon a “nxoist prewarmed L agar plate and incubated for the desired 46 period at 37 C. Following incubation, the millipore filter was removed from the agar surface to a 13 x 100 mm sterile test tube containing 1 ml of E minimal medium with glucose, and shaken for 15 sec with an apparatus described by Low and Wood (63) to separate conjugal pairs. Further dilutions were made in E minimal broth with glu— cose. One—tenth ml portions were pipetted from the mating mixture dilutions into tubes containing 3 ml of E minimal soft agar, 0.75%, kept at 45 C. The tubes were shaken and then the mixture was poured over the surface of E minimal agar plates selective for specific recombinants. The plates were incubated 96 hr at 37 C. Donor cells were counterselected by omitting an amino acid required of the donor from the E minimal agar plates. Zygotic induction experiments were carried out exactly like millipore filter matings described above except that following interruption of mating pairs, the mating mixture was diluted into sterile physiological saline. One-tenth ml portions were transferred to melted L soft agar overlays containing 0.2 m1 of logarithmic phase M853 which served as the indicator strain. The L soft agar overlays were then poured over the surface of L agar plates. Following incubation at 37 C for 24 hr, 1Zhe phage titer for each time interval was calculated. To allow for the putative 40 min latent period of tile phage growth cycle, the diluted mating mixture that 47 was plated at each time interval was reincubated at 37 C for 40 min. One-tenth m1 portions were then plated as described above. Linkage analysiSv—scoring unselected markers. The selected recombinant colonies were purified by restreaking them on the same type of selective minimal agar medium. After incubation for 96 hr at 37 C, isolated colonies were picked and spread as patches onto the same type of selec— tive minimal agar medium. Following 72 hr incubation at 37 C, these patch plates served as master plates for replica plating to various types of selective minimal media agar plates to determine linkage of the selected markers to unselected markers. Kinetic analysis--time of entry of genetic markers. The kinetic studies were done to demonstrate that the gradients of transfer were due to F-prime mediated chromo- somal transfer and not to random F+ type of chromosomal transfer. The time of entry of the genetic markers was determined by interrupting millipore filter matings at 10 min intervals. Cross streak method. This technique is based on a modification of the procedure of Berg and Curtiss (ll). A.loopfull of logarithmic phase donor cells of approxi— Jnately 2 x 108 cells/ml was streaked across the dried Jaine (0.02 ml) of the logarithmic phase recipient tester Stzrain already applied to the surface of selective E miLnimal agar plates. Twelve donor cultures could be 48 tested this way. The plates were incubated for 96 hr at 37 C. The recombinants were scored and the donor strains yielding the most recombinants were selected for use in further mating studies. Poisson distribution for selecting fertile donor strains. A logarithmic phase culture of approximately 2 x 108 donor cells/m1 was diluted to 10 cells/ml and 0.1 ml aliquot portions were added to 3 ml of L broth and incubated overnight at 37 C with aeration. When there was no growth in at least 37% of the broth tubes, there is an average of one cell per tube. A loopful of the donor cultures was tested by the cross streak method of bacterial mating. The appearance of recombinants was taken as evidence for the selection Of a fertile donor strain arising from one cell. Lysogenization of S. pullorum M835 bny35. Logarith— mic phase cultures of E. pullorum M835 were infected with a high m.o.i. with phage P35 and incubated overnight at 37 C with aeration. A loopful of the overnight culture was streaked for colony isolation on an L agar plate and incubated at 37 C for 24 hr. Isolated colonies were sub- cultured into 3 ml of L broth and incubated at 37 C with aeration through early log phase. A loopful of each cul— 11ure was spotted on a fresh lawn of M853 indicator strain Sensitive to P35 and incubated at 37 C for 8 hr. Lysis 01E M853 occurred if the culture tested was lysogenic for 49 P35. Lysogenization had no effect on auxotrophic require- ments or mating type. Electron microscopy. Photographs of various 8. pullorum donor and recipient strains were printed from developed Estar thick base plastic film (3% x 4 in) that had been exposed in a Philips EM300 electron microscope. Both collodion and formvar coated grids were used. The Optimum stain was 0.5% phosphotungstic acid (PTA) at pH 7.5. An overnight L broth culture of the bacteria to be examined was impinged upon a millipore HA 0.45 u, 25 mm membrane filter. The filter was placed in a 13 x 100 mm test tube containing 3 ml of sterile, distilled water. The test tube was gently shaken to wash the cells Off of the filter. The cell suspension was diluted to about 2 x 108 cells/ml and a drop was placed on a grid for viewing. To show the attachment of the RNA containing male— specific phage M82 to the sex—pili of E. pullorum, the phage were added at a m.o.i. of 100 to the cells after they had been washed off the millipore membrane filter in a 13 x 100 mm test tube containing distilled water. The mixture was allowed to sit at room temperature for approximately 30 min before placing a drOp of the sample On the grid for viewing. To photograph mating pairs, 1 x 109 donors were miexed with 1 x 109 recipients in L broth and incubated 50 15 min at 37 C in a New Brunswick G76 gyrotory shaker at a Speed setting of 3. The mating pairs were then impinged upon a millipore HA 0.45 u, 25 mm membrane filter and. incubated for 15 min at 37 C on a prewarmed moist L agar plate. The mating pairs were washed from the filter into 1 ml of distilled water in a 13 x 100 mm test tube by gently swirling the test tube. M82 phage were added at a m.o.i. of 100 and the mixture incubated 20 min at 37 C. The mixture was then stored in the cold until used (never more than 1 hr). A drOp of the sample was placed on the grid for viewing. Radioactive labeling and counting. The 3H—thymidine (15 Ci/m mole) was purchased from Calbiochem, Los Angeles, Calif., and l4C-thymidine (57 mCi/m mole) was purchased from Amersham/Searle, Chicago, Ill. The cells growing in TCGU broth containing deoxyadenosine were labeled with 3H-thymidine at l uCi/ml of broth or l4C-thymidine at 0.125 uCi/mi of broth supplemented with deoxyguanosine. To allow maximum incorporation of the 3H-thymidine, E. pullorum cultures were incubated 12 hr at 37 C with aeration. E. typhimuirum cultures were incubated 6 hr at 37 C with aeration. The E. pullorum M835 derivatives used in labeling experiments incorporated approximately 70% of ‘the added 3H-thymidine. The E. typhimurium strains incor- FXDrated 25% of the added 3H-thymidine and l4C-thymidine. The scintillation mixture used for cell radioactive C=<Dunting contained 1.35 gm of 2,5(diphenyloxazole)-benzene 51 (PPO) and 27 mg of l,4,—bis 2(4—methy1-5—phenyloxazole)— benzene (POPOP) per liter of toluene. Ten m1 of this mixture were added to vials containing the dried radio- active samples on filter paper and counted in a Packard Model 2002 Tri—Carb Liquid Scintillation Spectrometer. Preparation of bacterial lysates. The lysate preparation procedure of Clewell and Helinski (23) was modified for isolation of plasmid DNA. Cells were grown in 30 m1 of TCGU broth containing radioactive thymidine at 37 C with aeration. The labeled cells were pelleted by centrifugation in a Sorvall RC-2 at 10,000 rpm for 15 min at 5 C. The pellet was resuspended in 1 ml of cold 25% sucrose in 0.05 M Tris, pH 8.0, transferred to a polycarbonate test tube and plunged into an ice bath. Two-tenths m1 of lysozyme (5 mg/ml in 0.25 M Tris, pH 8.0) were added and the mixture iced for 5 min, followed by the addition of 0.4 ml EDTA made 0.25 M at pH 8.0 and another 5 min on ice. The cells were then lysed by the addition of 1.6 ml of the "lytic mixture" containing 1% Brij 58, 0.4% sodium deoxycholate, 0.0625 M EDTA and 0.05 M Tris pH 8.0. The mixture was again iced for 15 min. Lysis was completed by transferring the mixture to Beckman cellulose nitrate test tubes and subjected to 5-7 cycles of freeze—thawing. Freezing was accomplished by plunging the cellulose nitrate tubes into an ethanol—dry ice bath followed by thawing in a 45 C water bath. Lysis was complete when the mixture turned from Opaque to transparent, 52 and increased in viscosity. This crude lysate was then transferred to a small plastic centrifuge tube and centri- fuged in a Sorvall RC2—B at 20,000 rpm (48,000 x g) for 30 min at 5 C. The pellet contained approximately 95% Of the chromosomal DNA leaving the plasmid DNA in the supernatant fluid. The supernatant fluid was now re- ferred to as the cleared lysate. Eye-buoyant density equilibrium centrifugation. A modified procedure of Bazaral and Helinski (10) was used to isolate plasmid DNA in a CsCl-EtBr solution. Three ml of the 3H—thymidine or l4C-thymidine labeled cleared lysate from a 30 ml TCGU supplemented culture were mixed with 2.7 ml of TES, 0.5 ml of ethidium bromide (5 mg/ml TES) and 6 gm of anhydrous CsCl (final density of 1.54 gm/ml). The mixture was poured into a poly- allomer tube that had been pretreated by boiling 15 min in TBS buffer and soaked in 100 ug BSA/ml TES for 1 hour. The mixture was then covered with a layer of sterile light mineral oil and the tube capped and centrifuged in a Type 50 rotor at 44,000 rpm for 30 hr at 15 C in the Beckman model L3-50 ultracentrifuge. 1 Approximately 60 fractions (12 drops each) of 0.1 ml were collected directly into autoclaved 12 x 75 mm polypropylene tubes by puncturing the bottom of the poly- allomer gradient tube with a #24 gauge needle. Five ul samples of each fraction were spotted on 3/4" squares of ow ‘ b I u .1“ 53 Whatman #1 filter paper, washed in TCA, ethanol and anhydrous ether, dried and counted as described above. The plasmid peak fractions were pooled and dialyzed overnight at 5 C in the dark in TBS buffer to remove the EtBr and CsCl. Sucrose density gradients. A 0.15 ml sample of E. pullorum or 0.3 ml sample of E. typhimurium cleared lysate or pooled, dialyzed fractions was layered directly onto a 5.2 ml linear 20-31% neutral sucrose gradients made in 0.005 M EDTA, 0.5 M NaCl and 0.05 M Tris, pH 8.0. Centrifugation was in a SWSOL rotor at 50,000 rpm for 90 min at 15 C. Approximately 32 fractions of 0.17 ml each (8 drops) were collected from the bottom of the tube by using a Beckman fraction recovery system. The fractions were collected directly onto 3/4" squares of Whatman #1 filter paper, dried under a heat lamp, washed successively in 250 ml of cold 5% TCA, 95% ethanol and anhydrous ether. The filter paper fractions were then dried, and placed in vials containing 10 m1 of toluene scintillation fluid and counted as described above. For cosedimentation experi— ments, two samples from the dialyzed pooled fractions in the amounts described above were layered on top of each other on the neutral sucrose gradients and centrifuged as described above for the single samples. RESULTS Part I Counterselection of Donors Carrying F77 The F77 transmissible plasmid in E. typhimurium transfers the host chromosome in the clockwise order O—cysE—ilv-thr-pro. Godfrey (42) observed that F77 transfers the host chromosome of E. pullorum from one origin between Elz_and pgg in two directions (Fig. 1). A very stable mutant of E. pullorum M881, which harbors a pyEEl mutation, was selected and designated M883. An isolate of M883 infected with F77 was desig— nated M88300. A stable derivative of M88300 which trans— ferred the host chromosome at a higher frequency was designated M8830 and used for the mating experiments described in this thesis. To map the pyEEl mutation, the donor M8810 carrying F71 and the recipient M883 were mated and PyrD+ recombi— nants were selected. The F71 transmissible plasmid carry- ing Egpf mobilizes from gap in a counterclockwise direction in E. pullorum (42). The pyEE gene was mapped in E. pullorum (Fig. 3) in the same relative position it 54 Figure 3. 55 Time of entry of the pyrD+ gene from M8810 x M883 (A) and M8901 x M883 (B) matings. Matings took place on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating suspension (1 x 106 donor cells) was plated at each time interval on media selective for PyrD+ recombinants. The selective media was supplemented with leucine and cysteine. Histidine (A) and isoleucine (B) auxotrOphy were used for counterselection. Number of Recombinants per 0.1 ml x 10"4 10 56 + pyrD (A) ?—_‘?‘_?——‘O + pyrD (B) 10 20 30 4O Mating Time (min) Figure 3 50 6O 57 mapped in E. typhimurium, which was approximately 10 minutes counterclockwise from the trp Operon. To deter- mine that pyrD was not located near the origin of transfer for F77 in E. pullorum, the M8901 x M883 mating served as the control. Part II Origins of Transfer and Genetic Loci Mapped with Donors Carrying F77 Matings using the donor M8830. The recombination frequencies and gradients of transfer determined from matings between the donor M8830 and various E. pullorum recipients are listed in Table 7. It appeared from the matings with M8830 x M8374 (Table 7) that F77 transfers the E. pullorum chromosome in the order O-ilv-thr-pro. From the analysis of the linkage data (Table 8) and kinetic studies (Fig. 4) of the M8830 x M8374 matings, it was concluded that the linear arrangement and orientation of these selected genes in E. pullorum was O—ilv—thr—pro. The data on the incidence of coinheritance of the donor M8830 gyEEl auxotrophic marker and streptomycin sensi- tivity gene are presented in Table 9. There was more coinheritance of the donors streptomycin sensitivity gene than the gygEl gene. The results from the M8830 x M8369 matings (Table 7) were interpreted as a gradient of transfer continuous 58 Table 7. Recombination frequencies and gradients of marker transfer in crosses with E. pullorum donors and recipients. Recombination Cross Counter~ Length of Selected frequency Relative selection mating (min) recombinant (per initial frequency donor input) '4' .— M88300 x M5374 pyrDl 6o 11v+ 3.9 x 10_2 1.00 Thr+ 7.5 x 10__6 .22 Pro 1.5 x 10 .05 + .. M5830 x M5374 pyrDl 60 Ilv+ 1.2 x 10_g 1.00 Thr+ 6.7 x 1o_5 .54 Pro 1.8 x 10 .15 M5830 x M5369 pyrDl 60 11v: 1.3 x 10:; 1.00 Thr+ 7.0 x 10__5 .54 Pro+ 1.8 x 10__5 .14 His 0.7 x 10 .05 M5830 x M5371 pyrDl 60 Ilv: 8.8 x 10:: 1.00 Thr+ 7.4 x 10_6 .84 His 4.2 x 10 .05 M5830 x M590 pyrDl 6o Cys 6.5 x 10:: 1.00 Ilv 1.1 x 10 .17 + - M5830 x M592 pyrDl 60 CysE 6.8 x 10 4 1.00 M5830 x M5390 pyrDl 60 Cyss+ 6.0 x 10:: 1.00 11v: 1.3 x 10_5 .22 Thr 1.2 x 10 20 M5830 x M5104 pyrDl 60 Trp++ 1.4 x 10:: 1.00 CysB 1.0 x 10__S .71 His .7 x 10 .50 M5831 x M5369 pyrDl 60 11v: 4.8 x 10:? .80 Thr+ 7.0 x 10_6 .12 pro+ 6.0 x 10_6 1.00 His 1.5 x 10 25 M5831 x M5374 22:01 60 Ilv: 6.3 x 10:: .93 Thr+ 1.8 x 1o_6 .27 Pro 6.8 x 10 1.00 M5831 x M5104 pyrDl 60 Trp++ 2.0 x 10:: 1.00 CysB 1.5 x 10__6 .75 813+ 2.4 x 10 .12 M5832 x M5374 pyrDl 60 Ilv 4.7 x 10'4a 1.00 M5832 x M5104 pyrDl 60 His+ 4.2 x 10'63 1.00 M5832 x M5374 pyrDl 60 11v: 1.7 x 10:; 1.00 Thr+ 8.8 x 10_6 .52 Pro 1.5 x 10 .01 M5832 x M5104 pyrDl 60 Trp++ 6.3 x 10:: 1.00 CysB 5.1 x 10_7 .81 815* 2.7 x 10 .04 8Initial Observation 59 Table 8. Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8374 crosses.a Selected phenotype Unselected b phenotype 918+ 858+ 1189 Ilv Thr Pro+ + Ilv - 26.5 10.8 Thr+ 18.5C - 16.5 Pro 8.1 15.2 — aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. c . The results are g1ven as percent. Figure 4. 60 Time of entry of various markers from M8830 x M8374 matings. M8830 was mated with M8374 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for Ilv , Thr+ and Pro+ recombinants. The selective media were supplemented with leucine and cysteine. Uridine auxotrOphy was used for counterselection. Number of Recombinants per 0.1 ml 1100 1000 900 700 600 500 400 300 200 100 61 T l I— _ , I pro I —-I I I I 0 I l I I I I I 1’ I I ' I I I I I 10 20 3O 40 50 6O Mating Time (min) Figure 4 62 Table 9. Analysis of inheritance of cysteine auxotrOphy and streptomycin sensitivity of the donor in M8830 x M8374 crosses.a Selected phenotype Unselected phenotype 329b 219 253+ Ilv+ Thr Pro CysE- 1.2C 2.7 <1 Streptomycin sensitivity 11.5 3.2 9.5 a60 min mating. bThe number of recombinants analyzed. c . The results are g1ven as percent. 63 from an origin near ilv and in a clockwise direction as O-ilv-thr-pro—his. From the analysis of the gradient of transfer (Table 7) and kinetic studies (Fig. 5) of the M8830 x M8371 matings it was concluded that the orientation of transfer was O—ilv-thr'his. The recombination frequencies of the CysE+ recombi- nants observed from the matings of M8830 x M890 and M8830 x M892 were identical (Table 7). It was not possible to study the El! and £25 loci in M892 due to its extremely slow growing nature. M890 was useful in determining a gradient of transfer for gyEE and 112 (Table 7). Figure 6 shows the time of entry of the gyEEf and Eizf genes from the M8830 x M890 mating. It appeared that the gyEEf gene was transferred approximately 10 min after initiation of mating regardless of whether transferred as a plasmid or chromosomal marker and the Ele gene was transferred after 25 minutes. The mating M8830 x M8390 was very useful in demon— strating a gradient of transfer of cysE ilv thr (Table 7). This recipient was similar to M892, but was derived as a recombinant from an M8830 x M8374 mating and had the typical E. pullorum growth rate, unlike the slower grow- ing M892. The analysis of the linkage data (Table 10) and kinetic studies (Fig. 7) from the M8830 x M8390 matings Figure 5. 64 Time of entry of various markers from M8830 x M8371 matings. M8830 was mated with M8371 on millipore filters and transfer was interrupted at various times. A 0.1 m1 of the mating sus— pension (3.4 x 107 donor cells) was plated at each time interval on media selective for Ilv , Thr+ and His+ recombinants. The selective media were supplemented with leucine and cysteine. Uridine auxotrOphy was used for counterselection. 65 NI OH x as H.o Mom mucmcwnsooom mo nonEdz 2 lO Mating Time (min) Figure 5 Figure 6. 66 Time of entry of various markers from M8830 x M890 matings. M8830 was mated with M890 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for CysE and Ilv+ recombinants. The selective media were supplemented with leucine. Uridine auxotrOphy was used for counterselection. Number of Recombinants per 0.1 ml x 10-2 35 3O 25 20 15 10 67 + cysE (M82—) 1 l l + cysE (M82+) 10 2O 30 4O Mating Time (min) Figure 6 50 6O 68 Table 10. Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8390 crosses.a Selected phenotype Unselected Phen°type 200b 196+ 181+ CysE Ilv Thr + CysE - 33.7 6.1 11v+ 20C - 13.3 Thr+ 4.5 8.7 - aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. c . The results are g1ven as percent. Figure 7. 69 Time of entry of various markers from M8830 x M8390 matings. M8830 was mated with M8390 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for CysE , Ilv+ and Thr+ recombinants. The selective media -were supplemented with leucine. Uridine auxo- trOphy was used for counterselection. 7O N OH x as H.o you musmcHnEooom mo Hoosdz Mating Time (min) Figure 7 71 led to the conclusion that the linear arrangement and orientation of transfer of the selected genes was O-gysE-ilv-thr. The analysis Of the linkage data of the M8830 x M8391 and M8392 matings (Table 11) further suggested link- age Of gyEE to Ely. BEE and pgg. Combining the data from parts A and B of Table 11, one is able to construct a linkage map as O-cysE-ilv-thr—pro. Figure 8 is a composite of time of entry studies with M8830 and the recipients M8391 and M8392. These data confirmed the gene order based on the linkage data pre- sented in Table 11. Zygotic induction. M8830 was made lysogenic for P35 as described in the Materials and Methods section and designated M88301. This donor was mated with the non— 1ysogenic recipient M881 on millipore filters as described in the Material and Methods section. The apparent time of entry of the iEE.E§§f marker was at approximately 45 min after initiation of chromosomal transfer by F77 (Fig. 9). The matings of M8830 x M8104 demonstrated a gradient of transfer of trp>cysB>his (Table 7). From the analysis of the linkage data (Table 12) and kinetic studies (Fig. 10) from the M8830 x M8104 matings, it was concluded that the linear arrangement and orientation of the selected markers was O—trpecysB-his. Therefore, I inferred that there was also an origin of transfer for F77 between pyrD Table 11. 72 Analysis of inheritance of unselected donor markers in recombinants from crosses with M8830 and the E. pullorum recipients M8391 and M8392.a A. Mating: M8830 x M8391 Unselected phenotype Selected phenotype b 284 + 179+ CysE Ilv CysB+ — 40.7 Ilv+ 23.3C — Pro+ 3.1 7 2 B. Mating: M8830 x M8392 Unselected phenotype Selected phenotype 38410+ 269+ CysE Thr CysE+ — 5.9 Thr+ 6.0C — Pro+ 1.0 1.5 aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. c . The results are given as percent. Figure 8. 73 Time of entry of various markers from M8830 x M8392(A) and M8830 x M8391(B) matings. The matings were done on millipore filters and transfer was interrupted at various times7 A 0.1 ml of the mating suspension (3.4 x 10 donor cells) was plated at each time interval on media selective for CysE+, Ilv+ and Thr+ recombinants. The selective media were supplemented with leucine. Uridine auxotrOphy was used for counterselection. Symbols: M8830 x M8392-C) and [J , M8830 x M8391— . and I . Number of Recombinants per 0.1 m1 x 10—2 35 3O 25 20 15 10 74 + cysE (B) cysE+(A) Mating Time (min) Figure 8 Figure 9. 75 Time of entry of 225.222? from the M88301 x M881 mating. M88301 was mated with M881 on millipore filters and transfer was interrupted at various times. A 0.1 m1 of the mating sus- pension (3 x 102 donor cells) was mixed with M853 in an L soft agar overlay and poured over the surface of an L agar plate. Plaque Forming Units 35 3O 25 20 15 10 76 + att P35 (+40 min) 20 4O 6O Mating Time (min) Figure 9 80 77 Table 12. Analysis of inheritance of unselected donor markers in recombinants from the M8830 x M8104 crosses.a Selected phenotype Unselected phen°type 153b 221 + 229+ Trp+ CysB His Trp+ - 92 3.5 CysB+ 98c — 3.9 His+ 2 3 - aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. c . The results are given as percent. 78 Figure 10. Time of entry of various markers from M8830 x M8104 matings. M8830 was mated with M8104 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for Trp , CysB+ and His+ recombinants. The selective media were supplemented with leucine. Uridine auxotrOphy was used for counterselection. Number Of Recombinants per 0.1 ml 79 100 I I l I l trp+ 75h .. + cysB 50 L _ 25 — _ his 0 l I I 0 10 20 30 40 50 Mating Time (min) Figure 10 6O 80 and trp cysB which transferred in the clockwise direction as O-trpécysB-his. The high degree of linkage of cysB and trp (Table 12) was expected as it had been shown that they are co-transducible in E. pullorum (42). Part III Spontaneous Mutation of F77 The donor M8831 was chosen for further study after its accidental isolation. This donor strain appeared to be identical to M88300 except that it was auxotrophic for gygE due to an apparent spontaneous mutation of the F77 gygE gene. Hereafter, this mutant transmissible plasmid will be designated F77gy§E.. Matings using the donor M8831. The recombination frequencies and gradient of transfer for the various selected markers from the crosses of the donor M8831 and various E. pullorum recipients are listed in Table 7. The gradient of transfer and recombination frequencies for the M8831 x M8369 and M8831 x M8374 matings differed considerably from those of M8830 and the same recipients (Table 7). There were no CysE+ recombinants from M8831 x M890 and M8831 x M892 matings. The gene order based upon the gradient of transfer from the M8831 x M8104 matings was trp-cysB—his (Table 7). 81 It was evident from Table 13 that the trp and cysB genes were very closely linked but have little linkage to his and that the order of gene entry was O—trpecysB-his (Fig. 11). These data substantiated the data previously ob- served for these three genes in the M8830 x M8104 matings (Table 12, Fig. 10). Therefore, I inferred that F77gy§Ef transferred the host chromosome from an origin similar to or identical to the origin of transfer for F77 between pyrD and trp, also in the clockwise direction. Part IV Determination of a Homogeneous or Heterogeneous Donor POpulation and Selection for Donors with Increased Fertility After observing the ability of the donor M8830 to transfer its chromosome from possibly two origins and at moderate frequencies, I attempted to select donor strains that might transfer at a higher frequency and/or exclu— sively from only one origin. Poisson distribution test. I employed the Poisson distribution test as described in the Materials and Methods section. There was growth in 49 of 100 tubes of L broth following diluting and dispensing the M8830 culture. According to the Poisson distribution if there is no growth in 37% of the inoculated tubes, then there is on the average one bacterial cell per tube. I considered 82 Table 13. Analysis of inheritance of unselected donor markers in recombinants from the M8831 x M8104 crosses.a Unselected Selected phenotype phenOtYPe 192b 186+ 186+ Trp+ CysB His Trp+ - 90 1.6 CysB+ 92C - 1.6 His+ 3 3 — aUridine auxotrOphy for counterselection and 60 min mating. bThe number of recombinants analyzed. c . The results are g1ven as percent. 83 Figure 11. Time of entry of various markers from M8831 x M8104 matings. M8831 was mated with M8104 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for Trp , CysBI, and His+ recombinants. The selective media were supplemented with leucine. Uridine auxotrOphy was used for counterselection. Number Of Recombinants per 0.1 ml 84 175 I I I 1501— 125»- 100%- 75s- 50— 25— Mating Time (min) Figure 11 85 that the growth in the tubes inoculated with M8830 to have arisen from one bacterial cell. Each of the 49 broth cul— tures was tested for sensitivity to the bacteriophage M82. Forty-eight of the 49 cultures were sensitive. These 48 cultures were cross-streak mated with the recipients M8374 and M8104 and Ilv+ and His+ recombinants reSpectively were selected. The data collected after 48 hr of incubation at 37 C indicated that there might be three populations of donor cells: one pOpulation transferring from both origins, and two other populations with each transferring from only one of the two origins. After 96 hr of incubation at 37 C, the donor strains which appeared to transfer from only one of the two origins then appeared to be transferring from both origins. Therefore, I concluded that the donor M8830 was a homogeneous population carrying F77 which could transfer from both the origin near gygE and between EXEE and Egp, each in the clockwise direction. Matings using the donor M8832. The donor M8832, isolated from M8830 during the Poisson distribution experi— ment transferred the iiyf and Eigf genes initially at a frequency 4X and 3X respectively (Table 7), that pre- viously observed with the donor M8830. Table 7 shows that during subsequent matings, the recombination fre— quencies for the various selected markers in mating with M8832 x M8374 dropped. 86 From the analysis of the linkage data (Table 14) and kinetic studies (Fig. 12) of the M8832 x M8374 matings it was concluded that the linear gene arrangement and orientation of transfer was O—ilv-thr-pro. From the analysis of the gradient of transfer from the M8832 x M8104 matings (Table 7), it was concluded that the linear arrangement of these selected markers was O-trp-gysB-his. The linkage data (Table 15) and kinetic studies (Fig. 13) of the M8832 x M8104 matings confirmed the suggested orientation of gene transfer as O-trp-gysB-his. Electron microscopy of S. pullorum strains. The overall recombination frequencies and linkage of genetic markers from E. pullorum matings with chromosomal trans— fer mediated by F77 and F77gy§Ef were lower than ex— pected (29). To see if the E. pullorum donors and/or recipients had any apparent cell surface structures that might be responsible for poor mating pair formation and therefore reduction in chromosomal transfer, preparations of the cultures were scanned in the electron microscope. The recipient M8374 is shown in Fig. 14A. It looked normal with respect to gross bacterial cell surface struc— tures. The gross cellular appearance of the donor strain M8830 is shown in Fig. 14B. The average number of sex- pili per donor cell in E. pullorum is about 15. The donor M8831 and M8832 were identical in appearance to M8830. 87 Table 14. Analysis of inheritance of unselected donor markers in recombinants from the M8832 x M8374 crosses.a Selected phenotype Unselected PhenOtYPe 212b 198 140 Ilv+ Thr+ Pro+ 11v+ — 17.4 6.2 Thr+ 12.6C - 9.4 pro+ 7.2 8.6 — aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. CThe results given as percent. Figure 12. 88 Time of entry of various markers from M8832 x M8374 matings. M8832 was mated with M8374 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for I1v+, Thr+ and Pro+ recombinants. The selective media were supplemented with leucine and cysteine. Uridine auxotrOphy was used for counter- selection. 89 #- pro 20 15 ~ N _ 0 l Ioa x HE H.o mom mDCMGHQESOom mo umnEoz 6O 50 4O 3O 20 10 Mating Time (min) Figure 12 90 Table 15. Analysis of inheritance of unselected donor markers in recombinants from the M8832 x M8104 cross.a Unselected Selected phenotype Phen°type 114g 68 + 53+ Trp CysB His Trp+ - 89.7 1.9 CysB+ 94.7C - 1.9 His+ 15.8 5.8 - aUridine auxotrOphy used for counterselection and 60 min mating period. bThe number of recombinants analyzed. CThe results given as percent. 91 Figure 13. Time of entry of various markers from M8832 x M8104 matings. M8832 was mated with M8104 on millipore filters and transfer was interrupted at various times. A 0.1 ml of the mating sus- pension (3.4 x 107 donor cells) was plated at each time interval on media selective for Trp , CysB+ and His+ recombinants. The selective media were supplemented with leucine. Uridine auxotrOphy was used for counterselection. Number of Recombinants per 0.1 ml 70 6O 50 4O 30 20 10 92 Mating Time (min) Figure 13 Figure 14. 93 Electron micrographs of E. pullorum mating types. The cells were prepared for viewing by washing them off a millipore filter into sterile saline. The bar in each picture repre— sents 0.5u. A. Recipient, M8374. Magnifi— cation is 65,000 x. B. Donor, M8830. Magni- fication is 65,000 x. C. Mating pair, M8830 x M8374. Magnification is 31,500 x. 94 RU 95 96 97 The E. pullorum donor and recipient in Fig. 14C might actually represent effective pair formation. It appeared that many of the sex-pili of the donor make con- tact with the recipient cell. In all cases, the male specific RNA bacteriophage M82 were found adsorbing to the sex-pili of the donor cells. Part V Evidence of F77 Converting to a More Stable Association with the Host Chromosome The M88300 strain was checked regularly by the cross—streak method for its ability to transfer markers and from each test the isolate transferring at the high- est frequency was chosen as the donor for mating experi- ments. The recombinants from these matings were analyzed for their sensitivity to M82. Those recombinants receiv— ing F77 were sensitive and indicated that F77 was in the autonomous state. Upon stable association or integration of F77 and the host chromosome, the recombinants would only receive the sex factor as the terminal marker charac- teristic of Hfr mediated chromosomal transfer. Inte— gration of F77 should lead to a reduction in the number of M82 sensitive recombinants when selection was for a marker transferred very early. Concomitant with this transition, one should observe an increase in frequency 98 of selected donor markers in recombinants and a stability of donor ability in the donor strain studied. It was pointed out in the Materials and Methods section that the E. pullorum donor strains harboring F77 were quite stable with regard to donor ability measured by M82 sensitivity. Figure 15 shows the decreasing percentage of selected CysE+ recombinants remaining M82 sensitive and an increasing relative recombination frequency of Ilv+ recombinants during an eight-month period study of M88300 x M890 matings. Part VI Isolation and Characterization of Plasmid DNA Lysates prepared from E. pullorum donor strains M8830 and M8831, recipient strain M883 and E. typhimurium 8A532 and SAl466, a donor and recipient, respectively, were subjected to equilibrium centrifugation in a solution Of CsCl-EtBr to determine whether the F77 DNA could be separated from chromosomal DNA. With lysates of both the donor and recipient strains of E. pullorum a more dense sedimenting fraction characteristic of closed circular DNA (80) and a less dense fraction characteristic of Open circular DNA and linear DNA were Observed (Fig. 16A). With the lysates of the donor strain of E. typhimurium, SA532, similar fractions were observed (Fig. 16B) but with Figure 15. 99 Evidence for F77 converting to a more stable association with the host chromosome. The selected recombinants from the M88300 x M890 matings conducted over an eight-month period were analyzed at various times for the transfer of F77 and the donor marker ily+ gene. 100 OH x Ndm uo mmflocmswmum coï¬umsaQEoomm AOVOI + . 0 no no no .5 O 0 q. l 5 l A O _ _ a q T 1 f O T o C CIe\HI. C RI _ .5 O .5 O .5 AU 5 .5 8 .I 2 1. .1 A.Ivmmz ou o>fluwmcom mucmcï¬neoomm +mn>O unwound Feb Mar Apr May Jun Jul Aug Jan Mating Experiments (Months) Figure 15 Figure 16. 101 Isolation of plasmid DNA from S. pullorum M835 derivatives and E. typhimuriumT' Three m1 of cleared lysate of the various strains labeled with 3H-thymidine or l4C-thymidine were centri- fuged in CsCl-EtBr dye buoyant density gradients in a Type 50 rotor at 44,000 rpm for 30 hr at 15 C. Fractions were collected and 5 ul samples spotted on filter paper squares, washed in TCA, ethanol and ether and counted for radioactivity. Fractions 20-27 containing plasmid DNA were pooled and dialyzed in the dark against TES buffer at 5 C. (A) S. pullorum M883, M88300, M8830 and M5831,+T (E) g. typhimurium 511532, —lk4}q (C) S. typhimurium SAl466,—{1— . Symbols: 3H-thymidIne +, l4C-thymidine 4}- . Counts/Min 102 ï¬vl I T fJ\J r I l 9000 A ’- "I 600 _ .— 6000 400 T’ — _ J 3000 200 —- _ l, I I l -1, I I 0 JVI I I IKV I I â€I 0 B 250 —' ‘ 250 200 -- -* 200 150 r- -7 150 100 _ a 100 50 P ~ 50 l 0'28 i I ‘ikvi i i 0 C 200 —' '4 200 150 _. — 150 100 — ‘H 100 50 - T 50 1 0 u\§ I I 1 “\II I 0 18 20 25 30 38 40 45 Fractions Figure 16 Counts/Min 103 the recipient strain Of E. typhimurium, SAl466, the more dense fraction was not present (Fig. 16C). The fractions corresponding to higher density Of each strain were separately pooled, dialyzed and layered on 20-31% neutral sucrose gradients and subjected to centrifugation to ascertain whether there were molecules of different sedimentation coefficients in these fractions. As expected, the donor strain of E. typhimurium carried a closed circular DNA molecule (Fig. 17). Two peaks of radioactivity appeared in the denser material from the E. pullorum recipient M883 (Fig. 18A), and the donor M8831 (Fig. 18C). The results with M883 were expected since two plasmids, PO—l and PO-2, which have s values of 17 and 65 respectively, are found in another strain of E. pullorum, M853 (73). The fact that a PO-2-like plasmid was present in M8831 (Fig. 18C) but absent in M8830 (Fig. 18B) sur— prised me. Since infection of M853 with phage P35 re— sulted in the loss of the PO—2 plasmid (W. L. Olsen and .D. E. Schoenhard, Bacteriol. Proc., p. 46, 1971), M883 and M8831 were infected with phage P35 to find out whether ‘the PO-2-1ike plasmid would be lost. A peak of radio- éactivity corresponding to the PO-2—like plasmid was ob- Eserved in a sedimentation profile made from pycnographi— <=ally separated DNA of M8831; similar results were ob- tlained with the recipient M883 (data not shown). 1Iunerefore, neither the F77cysE- factor nor phage P35 Figure 17. 104 Neutral sucrose gradient of plasmid DNA from _s_. typhimurium 511532. A 0.3 m1 sample of 14c labeled pooled plasmid DNA from the CsCl-EtBr gradient was layered on a 20-31% neutral sucrose gradient. The gradient was centrifuged in an SW 50L rotor at 50,000 rpm for 90 min at 15 C. Fractions were collected directly onto filter paper squares and washed in TCA, ethanol and ether and counted for radioactivity. 105 )—-. r _ 75 O 5 ACHZ\mucuouvU Z 25 AU Figure 17 Figure 18. 106 Neutral sucrose gradient of plasmid DNA from E. pgllorum M835 derivatives. A 0.15 ml sample of JH labeled pooled plasmid DNA from the CsCl- EtBr gradient was layered on a 20-31% neutral sucrose gradient. The gradient was centrifuged in an 8W 50L rotor at 50,000 rpm for 90 min at 15 C. Fractions were collected directly onto filter paper squares and washed in TCA, ethanol and ether and counted for radioactivity. (A) M883, (B) M8830, (C) M8831. 107 A OH x cflz\mucsouvmm N 4 r0 4. 6 8 4 6 2 1 2 l 2 l _ . e . _ _ . r L] T. 4| I. LI I 1' ll LII. C r .7 p h t s 3 2 3 2 l 3 2 x cHz\mucsoov m m 30 25 20 15 10 Fractions Figure 18 108 excluded the PO—2 plasmid, but when F77 became associated with the host chromosome in M8830, the PO-2-1ike plasmid was lost. In the sedimentation profiles of M883 and M8831 it was observed that the area underneath the peak of the rapidly sedimenting plasmid was larger with the material from M8831 (Fig. 18C) than M883 (Fig. 18A). Resolution of the broader peak of M8831 was tried by fractionating the material into smaller samples. A definite shoulder in the faster sedimenting material was observed (Fig. 19A). A new M88300 donor strain was isolated as before. The sedimentation profiles of pycnographically separated DNA from M88300 (Fig. 198 and 20A) were very similar to the ones found with M8831 (Fig. 18C and 19A). A series of reconstruction experiments were done to show that the PO-2-like plasmid of M8831 was a composite of IF77gy§Ef and the PO-2 plasmid. Cosedimentation of F77 DNA isolated from E. typhimurium SA532 with plasmid DNA from £4883 resulted in the F77 DNA sedimenting with a greater ‘Ielocity than the PO—2 plasmid DNA (Fig. 21A). An s \falue of 70 was calculated for F77 (17) corresponding to 61 molecular weight of 51 x 106 daltons (9). Cosedi- ITientation of F77 DNA isolated from E. typhimurium SA532 ‘Nflith plasmid DNA isolated from M8830 (Fig. 21B) confirmed 1the absence of PO-2 plasmid or F77 DNA. Finally cosedi- Inentation of F77 DNA isolated from E. typhimurium SA532 Figure 19. 109 Neutral sucrose gradient of plasmid DNA from E. ullorum M835 derivatives. A 0.15 ml sample of §H IaBeIed pooled plasmid DNA from the CsCl- EtBr gradient was layered on a 20—31% neutral sucrose gradient. The gradient was centrifuged in an SW 50L rotor at 50,000 rpm for 90 min at 15 C. Fractions were collected directly onto filter paper squares and washed in TCA, ethanol and ether and counted for radioactivity. (A) M8831, (B) M88300. -2) 3H(Counts/Min x 10 A —II- 4— —L _L. J- —P I—- b ——I by I I I l I 1 I I I I I I O 4 E3 12 16 20 22 38 4O 44 48 52 54 Fractions Figure 19 12 w l'-‘ NO -2) 3H(Counts/Min x 10 Figure 20. 111 Neutral sucrose gradient of plasmid DNA from E. pullorum and E. typhimurium. The samples of labeled pooled plasmid DNA from the CsCl-EtBr gradient were layered on a 20—31% neutral suc- rose gradient. The gradient was centrifuged in an SW 50L rotor at 50,000 rpm for 90 min at 15 C. Fractions were collected directly onto filter paper squares and washed in TCA, ethanol and ether and counted for radioactivity. (A) E. allorum MS8300,-l- (B) §' pullorum M88300, _—iF—v + E. typhimurium SA532,——o—-, (C) S. pullorum M8831,-—l——, + E. typhimurium SA532, ——n-—. Symbols: 3H—thymidine—l—, 14C- thymidine-4J——. -2 Counts/Min x 10 _ —I)-— _‘F" + Z —I-— «L— Fractions Figure 20 24 16 24 16 24 16 -2 Counts/Min x 10 Figure 21. 113 Neutral sucrose gradient of plasmid DNA from S. pullorum and S. typhimurium. The samples 3f labeled pooled plasmid DNA from the CsCl— EtBr gradient was layered on a 20-31% nuetral sucrose gradient. The gradient was centri— fuged in an SW 50L rotor at 50,000 rpm for 90 min at 15 C. Fractions were collected directly onto filter paper squares and washed in TCA, ethanol and ether and counted for radioactivity. (A) E. ppllorum M883, —iF-, + S. typhimurium SA532,.43_., (B) E. pullorum M8830,-4|— , + S. typhimurium SA532,-{}— . Symbols: 3H-thymidine —lF—, 14C-thymidine-4D—-. 114 15 10 N OH x cflz\mucsou 5 0 4 2 6 8 l I.— _ ï¬ e 0 m OH x caz\mucsoo _ _ L _ .1 Figure 21 115 with PO-2-like plasmid DNA from M8831 and M88300 resulted in the F77 DNA sedimenting with the leading edge of the broad PO-2—like plasmid DNA peak with either M88300 (Fig. 208) or M8831 (Fig. 20C). A comparison of total counts of radioactivity in plasmid DNA determined from placing an aliquot portion of the cleared lysate of M883 and M88300 or M8831 separately onto a neutral sucrose gradients to the total radio- activity incorporated into cellular DNA, indicated that there existed approximately 20% and 24%, respectively, of the total DNA as extrachromosomal plasmid DNA in E. pullorum. There was about 8X as much plasmid PO-l DNA as PO—2 DNA. Therefore, there were about 170 COpies of plasmid PO-l for each copy of the PO—2 plasmid per cell. It appeared that there were 1-2 copies of the F77 and F77gyEEf factor per M88300 and M8831 respectively. DISCUSSION Part I Counterselection of Donors Carrying F77 The recipient M883 was chosen as the host for carry— ing F77 because it has a very stable pyrDl mutation which maps in the region between pro and trp in E. pullorum, as in E. typhimurium. However, the map position of pyrDl limits its use to short mating periods to avoid coinheri- tance of this marker. The control mating, M8901 x M883, indicates that pyrDl is not located within the first 60 minutes of an origin of transfer for F77. Part II Origins of Transfer and Genetic Loci Mapped with Donors Carrying F77 Matings using the donor M8830. From the analysis of the gradient of transfer, linkage and kinetic data of the M8830 x M8374 matings (Table 7, Table 8, and Fig. 4), I infer that F77 transfers the E. pullorum host chromosome from the same origin and with the same orientation: O-ilv-thr-pro, as it transfers the E. typhimurium chromo— some (Fig. 2). This suggests that the origin of F77 116 117 transfer in E. pullorum is not as seen in Fig. 1 (42) but in the same relative position as the origin in E. EypEE— murium (Fig. 2). Recall that the genotype of M8830 is $3351 gyEEl pyrDl/F-cygE+ rfa- pyrE+, and when streptomycin sensitive or CysEl recombinants are selected, a small number are streptomycin sensitive and few are cysteine auxotrophs. Thus, the use of streptomycin to counterselect the donor is futile. The gradient of transfer of the M8830 x M8369 matings (Table 7), O-ilv-thr-pro-his, is like that described for the M8830 x M8374 matings (Table 7, Table 8, and Fig. 4.). Since pyggl is used for counterselection, the His+ re- combinants must result from either counterclockwise trans- fer from the origin of F77 transfer in E. pullorum, or from a second origin of transfer. The kinetic data from the M8830 x M8371 matings (Fig. 5) indicate that F77 may be able to transfer the chromosome from one origin in two directions or from two different origins in E. pullorum. Therefore, the Ilv+ and Thr+ recombinants can result from clockwise chromo- . . . . + . somal transfer as in E. typhimurium, and the His recombi— nants from either counterclockwise chromosomal transfer from that same origin or from another origin. The results from the M8830 x M890 (Fig. 6) matings indicate that EXEEI is the most proximal marker trans- ferred by F77. It has the same time of entry, 10 min, 118 whether it is transferred as the plasmid or as a chromo- somal marker. This is about the same as reported by Godfrey (42). I conclude from the gradient of transfer, linkage and kinetic data analysis of the M8830 x M8390 matings (Table 7, Table 10, and Fig. 7) that the cysE, ilv and thr genes of E. pullorum are in the same relative position as they are in E. gyphimurium. It appears that F77 transfers the E. pullorum chromosome from the same origin and with the same orientation as in E. typhimurium. From the analysis of the linkage and kinetic data from the M8830 x M8391 and M8830 x M8392 matings (Table 11 and Fig. 8) it is possible to construct a linkage map for E. pullorum as O-gysE—ilv-thr—pro, with these genes in the same relative position as in E. typhimurium (Fig. 2). Eygotic induction. Figure 9 shows that the rela« tive time of entry of the BEE EEEf locus is 45 min after initiation of chromosomal transfer by F77. Since P35 antiserum was not used to adsorb free P35 released from the P35 lysogenic donor M88301, the data in Fig. 9 can be interpreted in either one of two ways: (1) the increase in P35 titer reflects the actual transfer of the prOphage P35 which has its attachment site near the pgg locus which is transferred after 45 min of mating and is analogous to att P22+ which maps between proC and proA in E. typhimurium, 119 or (2) the increase in the P35 titer is simply the result of a one step growth curve resulting from free P35 phage infection of M881, which happens to have a latent period of about 45 min. The analysis of the gradient of transfer, linkage and kinetic data of the M8830 x M8104 matings (Table 7, Table 12, and Fig. 10) leads to the conclusion that F77 can also transfer from an origin between EXEE and 35p in the clockwise direction resulting in a gradient of trans- fer of O—trp-cysB—his, which confirms the conclusion of Godfrey (42) who inferred that trp cysB are inverted in E. pullorum compared to E. typhimurium. Therefore, the previously Observed E. pullorum His+ recombinants may have resulted only from transfer from this origin between EXEE. and 35p instead of from a random origin or by counter- clockwise transfer from an origin of two directional transfer near gyEE. Therefore, it appears that F77 has the ability to transfer the E. pullorum chromosome from at least two different origins on Opposite sides of the host chromo— some and both in the clockwise direction. The primary origin corresponds to the origin of transfer mediated by F77 at 116 min on the E. typhimurium chromosome map with the secondary origin corresponding to a region near 45 min on the map. This suggests a situation analogous to that reported by Clark (22) for an E. coli donor with two integrated F factors transferring from two independent 120 origins, both in the clockwise direction, but only from one origin at a time. At this time neither an appropri- ate donor with counterselection by a very distal marker nor a suitable multiple auxotrOphic recipient is available to determine if in fact M8830 has two integrated sex factors. Also, it may be that F77 integrates or associ- ates initially at one of the two origins, but gives rise either to a subpopulation which transfers from the second origin or capable of transferring from both origins. An Hfr population of E. ggli_which gives rise to a subpopu— lation of Hfr donors transferring from an independent, separate origin, with the opposite orientation of trans- fer has been described (61). On the E. typhimurium chromosome there are two origins of transfer in Opposite directions near the 47 min region (83). One origin is for ~an Hfr transferring in the counterclockwise direction, the other origin is for an F-prime and an Hfr transferring in the clockwise direction. Since the chromosomes of E. typhimurium and E. pullorum appear to be similar, it is possible that E. pgllorum strains may have similar chromo- somal irregularities or nucleotide sequence which have sufficient homology with the cysE+ rfa- pyrE+ portion of F77 or a sfa locus with sufficient homology with the F portion of F77 to allow reciprocal crossovers and inte- gration for transfer from the second origin between the pyrD and trp loci. 121 Figure 22 shows a comparison Of the revised linkage map of E. pullorum with E. typhimurium. Part III Spontaneous Mutation of F77 The donor M8831 carrying the F77gyEEf transmissible plasmid appears to transfer the host chromosome from only one origin between the EXEE and E£p_genes in the clock- wise direction (Table 7, Table 13, and Fig. 11) at a frequency slightly greater than M8830 when mated with M8104. Unlike F77, F77gyEE- transfers ilifv EEEf and pggf in a random, F+ type of chromosomal transfer. The absence of CysE+ recombinants from M8831 x M890 and M8831 x M892 matings indicates that the F77gyEEf mutation is either identical to the chromosomal gyEEl mutation or very near it or an overlapping deletion. The fate of the £52- py£E+ portion is not known. The homology' between F77gygE’ and the chromosome may be due to a chromosomal E52 locus and the F portion of F77EX§§5 or to limited chromosomal nucleotide sequences and the gyEE (£525 pyEEf) material of F77EX§§5 in the region between p152 and E£p_in E. pullorum (Fig. 22). In E. typhimurium, there are two origins of transfer in the corresponding region between pyrD and trp (83). 122 Figure 22. The partial linkage maps of E. pullorum and ‘E. typhimurium. The origins of transfer for F71, F77 and F77cysE’ are shown as arrows. 123 thr ilv pro, att P22 pyrE rfa thr cysE pro, att P35 F77 Salmonella pullorum pyrD F77 _ pyrD F77cysE trp F71 cysB his F71 trp his Salmonella typhimurium Figure 22 124 Part IV Determination of a Homogeneous or Heterogeneous Donor Population Carrying F77 and Selection for Donors with Increased Fertility Poisson distribution test. A derivative of M8830, designated M8832, was isolated from the Poisson distri— bution test and is a homogeneous population with regard to the cells carrying only one type of transmissible plasmid, namely F77, which can transfer the E. pullorum chromosome from two different origins, both in the clockwise direction. There seems to be a preference for transfer from the origin near gyEE. This suggests that there is either a gradient of control favoring mobilization at the gyEE locus or that F77 might exist autonomously in a few cells as a suprpu- 1ation of the donor M8830 or M8832 as described for a strain of Hfr E. 99;; (61). This suprpulation might be responsible for transfer from the origin between EXEE. and Egp. The former conclusion is favored since no F77 closed circular DNA was isolated from M8830 (Fig. 18B). Matings using the donor M8832. The gradient of transfer, linkage and kinetic data (Table 7, Table 14, and Fig. 12) from the M8832 x M8374 matings are similar to those observed with the M8830 x M8374 matings (Table 7, Table 8, and Fig. 4), and further substantiates the origin and orientation of F77 chromosomal transfer as O-ilv-thr-pro. 125 The gradient of transfer, linkage and kinetic data (Table 7, Table 15, and Fig. 13) from the M8832 x M8104 matings are also similar to those presented from the M8830 x M8104 matings (Table 7, Table 12, and Fig. 10) and M8831 x M8104 matings (Table 7, Table 13, and Fig. 11), and further substantiates existence of a second origin for F77 transfer, also in the clockwise direction. Electron microscopy of S. pullorum strains. Even' though it has been possible to determine the origin and orientation of F77 and F77gy§Ef mediated chromosomal transfer in E. pullorum by gradient of transfer, linkage analysis and kinetic studies, the overall recombination frequencies for the selected markers are 10 to 100 fold less than normally Observed with E. typhimurium donor strains. Therefore, the recipient strain M8374 and donor strains M8830, M8831, and M8832 were scanned in the electron microsc0pe to look for gross surface structures that may be implicated in inhibiting pair formation. The recipient M8374 (Fig. 14A) appears to be free Of unusual surface structures. The donor strains (Fig. 14B) however, appear to have an average of 15 or more sex—pili per cell. This is in great excess of the normal 2 to 3 sex-pili per E. 99;; donor cell (27). The many copies of the sex-pili per cell can result from either derepression of sex-pili synthesis (45) or relaxed replication control (9) of the F77 or F77cysE- factor. 126 Figure 14C shows what may be an actual mating pair. Depressed sex-pili synthesis may result in the formation of many nonfunctional sex-pili which can interfere with effective pair formation and conjugation. Similarly, multiple COpies of F77 or F77gyEE- may be responsible for an increased number of sex-pili. Another possibility is that multiple COpies of the F—prime factor may result in competition for the homologous region on the chromosome and interfere with chromosomal mobilization and transfer. From the sucrose density gradient work it was calculated that there are 1 to 2 COpies of F77 or F77gy§§7 in M58300 and M8831, respectively. This favors the conclusion that there is derepressed sex-pili synthesis in the donor strains. Part V Evidence of F77 Converting to a More Stable Association with the Host Chromosome As mentioned in the Materials and Methods section, the E. pullorum donors carrying F77 were very stable with regard to donor ability as measured by M82 sensitivity. The data in Fig. 15 indicate that with time and constant selection for a better donor, there is less transfer of the intact F77, as measured by M82 sensi— tivity of the CysE+ recombinants in the matings of M88300 x M890. Concomitantly, there is an increase in 127 the recombination frequency of a selected donor chromo— somal marker, ile° Since gygEf is a plasmid gene, the recombinants must arise from either a reciprocal cross- over between F77 and the donor chromosome in the F-gyEE region or a nicking of the chromosomally associated F77 between F and gyEE. This decrease in intact F77 transfer and increase in a chromosomal transfer is analogous to the conversion of M88300 from the Type I F-prime donor to M8830, a Type II F-prime donors (76, 84). The E. pullorum M8830 donor strain also has charac— teristics of both Type I F+ and Type II F+ E. ggli_donors described by Curtiss and Renshaw (29). Mobilization at the EXEE locus is like a Type I F+ donor since the F77 factor is very stable and mobilizes with a specific orientation, but with an intermediate frequency. Mobili— zation at the pyrD-trp locus is like a Type II F+ donor which transfers at a low frequency which may be due to integration of F77 into the host chromosome but cannot eXpress itself as a typical Hfr. Part VI Isolation and Characterization of Plasmid DNA The M883 isolate of E. pullorum strain M835 apparently contains two plasmids: PO—l and PO-2 (Fig. 18A) which are similar in size, 175 and 655 respectively, to those found in strain M853 (73). However, the PO-2 plasmid 128 in M835 is not excluded by P35 phage as it is in M853 (W. L. Olsen and D. E. Schoenhard, Bacteriol. Proc., p. 46, 1971). The fact that closed circular DNA molecules were isolated from M88300 (Fig. 20A) and that the sedimentation profiles with these molecules had a shoulder on the lead— ing edge of the more rapidly sedimenting material indi- cates to me that F77 is still in the autonomous state (Fig. 19A). Confirmation of this conclusion is provided by cosedimentation of differentially labeled DNA from 'E. typhimurium SA532 and M88300 (Fig. 20B). The broad peak of activity extending from fractions 4 to 9 with material from M88300 probably is due to the fact that it is a composite of F77 and plasmid PO—2. The M8830 mutant of M88300 which transfers from two origins: at gyEE between py£E_and Egp, and with an inter- mediate frequency, was suspected of being an Hfr donor in which F77 no longer existed autonomously. This conclusion was supported since no closed circular DNA of F77 size was observed (Fig. 18B). The Hfr type is probably the result of a mutation(s) in some regulatory mechanism. The correlated loss of the PO-2 plasmid was un- expected since the autonomous state Of neither F77 nor plasmid PO-2 was eliminated in M8831 (Fig. 19A) or M88300 (Fig. 19B). Since neither F77 nor plasmid PO—2 remain autonomous in M8830 this is not a case of plasmid incompatibility as described by Novick (68) and reported 129 between ColB2 and R(f) (45). An explanation of this observation is that F77 and PO-2 have a common control for maintenance as independent replicons. If the mainte- nance mechanism is mutated, then either the plasmid must come under the control of some other replicon, e.g., the chromosome, or abort. Because the F77 factor possesses homology with the chromosome at the gyEE locus and probably at the EEE and EXEE loci, it can integrate while the PO-2 lacking known homology is lost. The M8831 mutant of M88300 which is F77gy§Ef 5E3? pygE? was similar to its progenitor except that mobili— zation Of the chromosome occurred only between pyEE and Egp. Apparently the mutation in the F77 factor was severe enough to prevent proper pairing and integration at the gyEE locus. Probably integration at the gyEE_locus is a function of this gene rather than genes of the F. Since the mutation in the gyEE locus is very stable, it is possible that the £53 and EXEE loci are also affected. If so, then integration between pyEE and E£p_must be due to F homology. This may account for the low frequency of transfer from this site. Tests of this conclusion rest upon isolating Hfr donors from M8831, and other mutants of M88300 with which complementation and recombination studies can be done. Approximately 88% of the plasmid DNA of E. pullorum M835 derivatives exists as plasmid PO—l DNA corresponding to 170 copies per cell. The PO—2-like plasmid DNA is 130 present in only 1 to 2 COpies per cell. The PO—l and PO—2- like plasmids are probably cryptic plasmids as they have no known host phenotypic expression, similar to the small molecular weight plasmid (1.4 x 106 daltons) found by Cozzarelli EE.§£° (25) in E. gel; strain 15. Olsen and Schoenhard (73) observed approximately 150 COpies of the PO-l plasmid and 1 to 2 COpies of the PO—2 plasmid per cell of E. pullorum M853. I conclude that the F—prime factor F77 exists in E. pullorum as either an autonomous replicon like a Type I F-prime donor or stably associated with the chromosome like a Type II F-prime donor. In either case, it transfers the host chromosome from two different origins; at gy§E_and be- tween EXEE and 55p. both in the clockwise direction. When the F77 factor becomes stably associated with the host chromosome, the PO-2 plasmid is lost. The F77gy§Ef factor transfers only from the origin between EXEE and Egp. It exists as an autonomous replicon and the plasmid PO—2 is not lost. This suggests that there is a common control mechanism for the autonomous replication of the F-prime and the PO-2 plasmid. A mutation Of this control mechan— ism may force the F77 factor to either abort or be rescued by associating with the host chromosome due to its chromo- somal homology. Since there are only 1 to 2 COpies of F77 or F77gy§Ef in the autonomous state per donor cell, the numerous sex—pili per donor cell must result from de— repressed sex-pili synthesis. SUMMARY The transmissible plasmid F77 carrying the cysE+ + . . rfa pyrE genes transfers the E. typhimurium chromosome from the chromosomal gyEE locus at 116 min on the chromo— some map and in the clockwise direction (Sanderson and Saeed, personal communication). The conclusion based on the gradients Of transfer, linkage analyses and kinetic studies from the matings with E. pullorum donors carrying F77 and E. pullorum recipients is that F77 transfers the E. pullorum chromo- some from two origins, both in the clockwise direction. F77 transfers primarily from the origin at the cysE locus which maps in the same relative position, 116 min, as in E. typhimurium and secondarily from the origin between the pyrD and trp loci which is equivalent to the 45 min posi— tion in E. typhimurium. The E. pullorum genetic markers studied appear to be in the same relative position as in E. typhimurium except for the inversion of the trp cysB loci. Presumably transfer from the origin at cysE is due to the homology between the cysE rfa pyrE loci on both F77 and the host chromosome. Transfer from the origin between pyrD and trp may be due to either a sfa 131 132 locus for the F portion of F77 or a nucleotide sequence with sufficient homology for the cysE+ rfa- pyrB+ portion of F77. The observation with M8830 of increased donor- capability, reduction in F77 transfer per se and an in- crease in transfer of donor markers, leads to the con— clusion that F77 is stably associated with the host chromosome. The conclusion based on the results of the Poisson distribution test is that F77 is a homogeneous transmissible plasmid in the host cell. The spontaneous mutant of F77 designated F77gyEEf, transfers the E. pullorum chromosome only from the origin between EXEQ and Egp in the clockwise direction at the same frequency as F77. Transfer from this origin must be due to either a chromosomal EEE locus for the F portion of F77gy§Ef or a nucleotide sequence with sufficient nucleo- tide sequence homology for the chromosomal portion of F77gyEE-. The low frequency of transfer suggests that F77EX§§5 does not form a stable association with the chromosome. Electron micrographs show that E. pullorum donors harboring F77 and F77EXEE- have at least 15 sex—pili per cell. The recipient cell has no unusual gross cell sur- face structures. Many sex-pili appear to be involved in mating pair formation. Supercoiled DNA molecules can be isolated from E. pullorum M835 derivates and an E. typhimurium donor strain by CsCl-EtBr dye buoyant density gradient 133 centrifugation and characterized by zonal centrifugation in a linear neutral sucrose gradient. Using these methods, it was found that the E. ppllorum recipient M883 has two distinct plasmid molecules designated PO-l and PO—2. Plasmid PO-l has a molecular weight of 2.1 x 106 daltons, sedimentation coefficient of 175 and present in about 170 copies per host chromosome. The PO-2 plasmid is nOt ex— cluded by phage P35, and has a molecular weight of 45 x 106 daltons, sedimentation coefficient of 655 and present in about 1-2 copies per host chromosome. The donor M8830 carrying F77 has only the PO-l plasmid molecules present. The PO-2 plasmid appears to be excluded by F77. When the recipient M883 is newly infected with F77 (M88300), the PO-2-like plasmid peak appears broader and is a combi— nation Of two plasmid species, a 655 and 705 molecule. The donor M8831 carrying F77_cys_h;' has the PO-l plasmid species and the broad PO—Z-like plasmid species which also is a combination of two plasmid species, a 655 and 70s molecule. The plasmid molecule isolated from the E. typhimurium donor SA532 carrying F77 appears to be homogeneous and co— sediments with the 70s plasmid molecule of the broad PO—2* like peak Of M88300 and M8831. Further studies indicate 6 daltons and that F77 has a molecular weight of 51 x 10 sedimentation coefficient of 705. This suggests that F77 is autonomous in E. pullorum, but when it becomes 134 associated with the host chromosome, the PO-2 plasmid molecule is lost. This suggests that the PO—2 plasmid and F77 factor may have a common replication control mechanism. A spontaneous mutation may have inhibited replication, but F77 can associate with the chromosome due to homology and be maintained. The lack of PO-2 plasmid exclusion by F77gyEEf suggests that the spon- taneous mutation resulting in the mutation of the F77gy§Ef gene has not disrupted PO-2 and F77 plasmid replication control. L ITERATURE C ITED L ITERATURE C ITED Achtman, M., N. Willetts, and A. J. Clark. 1971. Beginning a genetic analysis of conjugational transfer determined by the F factor in Escherichia coli by isolation and characterization of transfer- deficient mutants. J. Bacteriol. EEE:529-538. Adams, M. H. 1959. Bacteriophages. Interscience Publishers. New York. Adelberg, E. A., and S. H. Burns. 1960. Genetic variation in the sex factor of Escherichia coli. J. Bacteriol. 12:321-330. Adelberg, E. A., M. Mandel, and G. Chen. 1965. Optimal conditions for mutagenesis by N—methyl-N'- nitro-N-nitrosoguanidine in Escherichia coli K12. Biochem. Biophys. Res. Comm. EE:788-795. Adelberg, E. A., and J. Pittard. 1965. Chromosome transfer in bacterial conjugation. Bacteriol. Rev. 32:161-172. Adler, H. I., W. D. Fisher, A. Cohen, and A. A. Hardigree. 1967. Miniature Escherichia coli cells deficient in DNA. Proc. Nat. Acad. Sci. El:321-326. Barbour, S. D., and A. J. Clark, 1970. Biochemical and genetic studies of recombination proficiency in Escherichia coli, I. Enzymic activity associ- ated with recB+ and recC+ genes. Proc. Nat. Acad. Sci. EE:955-961. Bastarrachea, F., and A. J. Clark. 1968. Isolation and Characterization of an Escherichia coli strain harboring three sex factors. Genetics. EE:641- 660. Bazaral, M., and D. R. Helinski. 1968. Characteri- zation of multiple circular DNA forms of colicino— genic factor El from Proteus mirabilis. Bio- chemistry. ‘lz3513—3519. 135 10. ll. 12. l3. 14. 15. l6. l7. l8. 19. 20. 21. 136 Bazaral, M., and D. R. Helinski. 1968. Circular DNA forms of colicinogenic factors El, E2, E3 from Escherichia coli. J. Mol. Biol. EE:185-l94. Berg, C. M., and R. Curtiss. 1967. Transposition derivatives of an Hfr strain of Escherichia coli K12. Genetics. EE:503-525. Bonhoeffer, F., and W. Vielmetter. 1968. Conju- gational DNA transfer in Escherichia coli. Cold Spring Harbor Symp. Quant. Biol. EE:623-627. Brinton, C. C., Jr. 1965. The structure, function, synthesis and genetic control of bacterial pili and a molecular model for DNA and RNA transport in gram-negative bacteria. Trans. N. Y. Acad. Sci. 31:1003-1054. Brinton, C. C., Jr., P. Gemski, Jr., and J. Carna- han. 1964. A new type of bacterial pilus geneti- cally controlled by the fertility factor of E. coli K12 and its role in chromosome transfer. Proc. Nat. Acad. Sci. EE:776-783. Broda, P. 1967. The formation of Hfr strains in Escherichia coli K12. Genet. Res., Camb. E:35-47. Broda, P., J. R. Beckwith, and J. Scaife. 1964. The characterization of a new type of F-prime factor in Escherichia coli K12. Genet. Res., Camb. ‘Ez489-494. Burgie, E., and A. D. Hershey. 1963. Sedimentation rate as a measure of molecular weight of DNA. Biophys. J. E:309-321. Campbell, A. M. 1962. Episomes. Advan. Genet. EE:101-l45. Campbell, A. 1969. Episomes. Harper & Row, Pub— lishers. New York. Caro, L. G., and M. Schnos. 1966. The attachment of the male-specific bacteriophage fl to sensitive strains of Escherichia coli. Proc. Nat. Acad. Sci. EE:126-132. Cavalli, L. L., J. Lederberg, and E. M. Lederberg. 1953. An infective factor controlling sex com— patibility in Bacterium coli. J. Gen. Microbiol. E:89-103. 137 Genetic analysis of a "double 22. Clark, A. J. 1963. male" strain of Escherichia coli K12. Genetics. 3E:105-120. 1969. Super- 23. Clewell, D. B., and D. R. Helinski. coiled circular DNA-protein complex in Escherichia Purification and induced conversion to an Proc. Nat. Acad. Sci. coli: Open circular DNA form. EE:1159-ll66. W. D. Fisher, R. Curtiss, and H. I. Adler. 24. Cohen, A., 1968. The properties of DNA transferred to mini- cells during conjugation. Cold Spring Harbor Symp. Quant. Biol. 31:635-641. 25. Cozzarelli, N. R., R. B. Kelly, and A. Kornberg. A minute circular DNA from Escherichia coli 15. Nat. Acad. Sci. g9:992-999. 1969. Bacterial conjugation. 33:69-136. 27. Curtiss, R., L. G. Caro, D. P. Allison, and D. R. Stallions.’ 1969. Early stages of conjugation in Escherichia coli. J. Bacteriol. 100:1091—1104. Curtiss, R., L. J. Charamella, D. R. Stallions, J. A. Mays. 1968. Parental functions during conjugation in Escherichia coli K12. Bacteriol. Rev. ‘EE:320-348. 1968. Proc. Ann. Rev. 26. Curtiss, R. Microbiol. and 28. 29. Curtiss, R., and J. Renshaw. 1969. F+ strains of Escherichia coli K12 defective in Hfr formation. GenetICs. EE:7-26. 30. Curtiss, R., and D. R. Stallions. 1967. Energy requirements for specific pair formation during conjugation in Escherichia coli K12. J. Bacteriol. 21:490-492. and J. D. Gross. 1962. Transfer 31. DeHaan, P. G., delay and chromosomal withdrawal during conju- gation in E. coli. Genet. Res. {3:251-272. E. A. Adelberg, A. J. Clark, and P. E. A proposal for a uniform 32. Demerec, M., Genetics. Hartman. 1966. nomenclature in bacterial genetics. Ei:61—76. 33. DeVries, J. K., and W. K. Maas. 1971. Chromosomal factors in recombination- integration of F' deficient Hfr strains of Escherichia coli. J. Bacteriol. 106:150-156. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 138 Echols, H. 1963. PrOperties of Escherichia coli superinfected with F—lactose and F—galactose episomes. J. Bacteriol. EE: Freifelder, D. 1968. Biol. EE:425-434. Freifelder, D. 1968. 262-268. Studies with Escherichia coli sex factors. Cold Spring Harbor Symp. Quant. Studies of E. III. Closed circular F'lac DNA—molecules. J. Mol. Biol. 31:31-38. Freifelder, D. 1968. Studies of E. coli sex factors. IV. Molecular weights of the DNA of several F' elements. J. Mol. Biol. EE: coli sex factors. Fulton, C. 1965. Continuous chromosome transfer in Escherichia coli. Gilbert, W., and D. Dressler. The rolling circle model. Genetics. Quant. Biol. 2:473-484. Glandsdorff, N. 1967. 1968. EE;55-74. Pseudoinversions in the chromosome of Escherichia coli K12. Genetics. EE:49-61. Glover, S. W. 1968. New York. Godfrey, O. W. 1969. The induction, isolation and analysis of auxotrophic mutants, p. 17—21. In R. C. Clowes and W. Hayes (ed.), Experiments—In microbial genetics, John Wiley and Sons, Inc. Chromosome transfer in Salmonella pullorum mediated by F—prime factors carryIng Salmonella genes. Michigan State UnIVersity. Gorini, L., and H. Kaufman. Ph.D. thesis. East Lansing, Michigan. 1961. Selecting bacterial mutants by the penicillin method. Science. 131:604-605. Gross, J. D., and L. G. Caro. in bacterial conjugation. 284. Hausmann, C., and R. C. Clowes. fertility—repressed F—like sex factor. J. Bacteriol. 107:900-906. Hayes, W. 1953. The mechanism of genetic recombi- nation in Escherichia coli. Symp. Quant. Biol. EE:75-93. 1966. DNA transfer J. DNA replication: Cold Spring Harbor Symp. Mol. Biol. _1_6_:269- 1971. ColB2-K77, Cold Spring Harbor a 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 139 Hayes, W. 1957. The kinetics of the mating process in Escherichia coli. J. Gen. Microbiol. EE:97- 119. Hayes, W. 1968. The genetics of bacteria and their viruses. John Wiley and Sons, Inc. New York. Hayes, W. 1969. Introduction: What are episomes and plasmids? Ciba Foundation Symp. Little, Brown & Co.. Boston. Bacterial Episomes and Plasmids. p. 4.11. Ihler, G., and W. D. Rupp. 1969. Strand-specific transfer of donor DNA during conjugation of E. coli. Proc. Nat. Acad. Sci. EE:138-l43. Jacob, F., and E. A. Adelberg. 1959. Transfert de characteres, genetiques par incorporation au facteur sexuel d'E coli. Comp. Rend. Acad. Sci. EEE:189-l9l. Jacob, F., and S. Brenner. 1963. Sur la regulation de la synthese der DNA chez les bacteries: l'hypothese due replicon. Comp. Rend. Acad. Sci. EEE:298-300. Jacob, F., S. Brenner, and F. Cuzin. 1963. On the regulation of DNA replication in bacteria. Cold Spring Harbor Symp. Quant. Biol. EE:329-348. Jacob, F., and E. L. Wollman. 1957. Analyse des groupes de liaison genetique de differentes souches donatrices d'Escherichia coli K12. Comp. Rend. Acad. Sci. EEE:1840-1843. Jacob, F., and E. L. Wollman. 1961. Sexuality and the Genetics of Bacteria. Academic Press, New York. 374 pp. Joset, F., B. Low, and R. E. Krisch. 1964. Induction by radiation of a new direction of chromosome trans- fer during conjugation in an Hfr strain of Escheri- chia coli. Biochem. Biophys. Res. Commun. El: 742-747. Kahn, P. L. 1969. Evolution of a site of specific genetic homology on the chromosome of Escherichia coli. J. Bacteriol. 100:269-275. Lederberg, J., L. L. Cavalli, and E. M. Lederberg. 1952. Sex compatibility in Escherichia coli. Genetics. 31:720-730. 59. 60. 61. 62. 63. 64. 65. 66. 67. 68. 69. 70. 140 Lederberg, J., and E. L. Tatum. 1946. Gene recombi- nation in E. coli. Nature. 158:558. Lederberg, J., and E. L. Tatum. 1946. Novel geno- types in mixed cultures Of biochemical mutants of bacteria. Cold Spring Harbor Symp. Quant. Biol. EE:113-114. Low, B. 1967. Inversion of transfer modes and sex factor-chromosome interactions in conjugatiOn in Escherichia coli. J. Bacteriol. 23:98-106. Low, B. 1968. Formation of merodiploids in matings with a class of rec recipient strains of Escherichia coli K12. Proc. Nat. Acad. Sci. 60:160-167. Low, B., and T. H. Wood. 1965. A quick and efficient method for interruption of bacterial conjugation. Genet. Res. Camb. E:300-303. Maas, R. 1963. Exclusion of an Flac episome by an Hfr gene. Proc. Nat. Acad. Sci. EE:1051-1055. Maas, W. K., and A. D. Goldschmidt. 1969. A mutant of Escherichia coli permitting replication of two F factors. Proc. Nat. Acad. Sci. EE:873-880. Marinus, M. G., and E. A. Adelberg. 1970. Vegetative replication and transfer replication of deoxy- ribonucleic acid in temperature-sensitive mutants of Escherichia coli K12. J. Bacteriol. EEE:1266- 1272. Meynell, E., G. G. Meynell, and N. Datta. 1968. Phylogenetic relationships of drug-resistance factors and other transmissible bacterial plasmids. Bacteriol. Rev. EE:55-83. Novick, R. P. 1969. Extrachromosomal inheritance in bacteria. Bacteriol. Rev. EE:210-235. Ohki, M., and J. Tomizawa. 1968. Asymmetric trans- fer of DNA strands in bacterial conjugation. Cold Spring Harbor Symp. Quant. Biol. EE:651-658. Ohtsubo, E. 1968. Genetic studies and function of F factor in E. coli. Master of Science thesis, Osaka University, Osaka, Japan. 71. 72. 73. 74. 75. 76. 77. 78. 79. 80. 81. 141 Ohtsubo, E., Y. Nishimura, and Y. Hirota. 1970. Transfer-defective mutants of sex factors in Escherichia coli. I. Defective mutants and complementation analysis. Genetics. Eizl73-188. Olsen, W. L. 1971. BacteriOphage P35 and its relationship to the plasmid DNA of Salmonella ullorum. Ph.D. thesis. Michigan State Uni: ver51ty. E. Lansing, Michigan. Olsen, W. L., and D. E. Schoenhard. 1972. Demon- stration Of Two Cryptic Plasmids in Salmonella pullorum M853. (Submitted to J. Bacteriol.). Orskov, I., and F. ¢rskov. 1960. An antigen termed f+ occurring in F+ E. coli strains. Acta. Pathol. Microbiol. Scand. IE:37-46. Palchoudhury, S. R., and V. N. Iyer. 1971. Compati- bility between two F factors in an Escherichia coli strains bearing a chromosomal mutation affecting DNA synthesis. J. Mol. Biol. E1:319-333. Pittard, J., and E. A. Adelberg. 1963. Gene trans- fer by F' strains of Escherichia coli K12. II. Interaction between F-merogenote and chromosome during transfer. J. Bacteriol. EE:1402-l408. Pittard, J., J. S. Loutit, and E. A. Adelberg. 1963. Gene transfer by F' strains of Escherichia coli K12. I. Delay in initiation of chromosome trans- fer. J. Bacteriol. EE:1394-l401. Pittard, J., and T. Ramakrishnan. 1964. Gene trans- fer by F' strains of Eschrichia coli. IV. Effect of a chromosomal dEletiOn on chromosome transfer. J. Bacteriol. EE:367-373. Pittard, J., and E. M. Walker. 1967. Conjugation in Escherichia coli. Recombination events in termiï¬al regions of transferred deoxyribonucleic acid. J. Bacteriol. 21:1656-1663. Radloff, R., W. Bauer, and J. Vinograd. 1967. A dye-buoyant density method for the detection and isolation of closed circular duplex DNA: The closed circular duplex DNA in HeLa cells. Proc. Nat. Acad. Sci. El:1514-1521. Rosner, J. L., E. A. Adelberg, and M. B. Yarmolinsky. 1967. An upper limit on B-galactosidase transfer in bacterial conjugation. J. Bacteriol. 22:1623- 1628. 82. 83. 84. 85. 86. 87. 88. 89. 90. 91. 92. 93. 142 Rupp, W. D., and G. Ihler. 1968. Strand selection during bacterial mating. Cold Spring Harbor Symp. Quant. Biol. EE:647-650. Sanderson, K. E. 1970. Current linkage map of Salmonella typhimurium. Bacteriol. Rev. 34: lia—I§§o _— Sanderson, K. E., and C. A. Hall. 1970. F-prime factors of Salmonella typhimurium and an inversion between E. typhimurium and EsEherichia coli. Genetics. Egz215-228. Scaife, J. 1966. F-prime factor formation in E. coli K12. Genet. Res., Camb. lE:189-l96. Scaife, J., and J. D. Gross. 1963. The mechanism of chromosome mobilization by an F-prime factor in Escherichia coli K12. Genet. Res. Camb. 5:328-331. Scaife, J., and A. P. Pekhov. 1964. Deletion of chromosomal markers in association with F-prime factor formation in Escherichia coli K12. Genet. Res. Camb. E:495-498. Schleif, R. 1969. An L-arabinose binding protein and arabinose permeation in Escherichia coli. J. M010 BiOl. £§:185-1960 Silver, 8. D. 1963. The transfer of material during mating in Escherichia coli. Transfer of DNA and upper limits on the transfer of RNA and protein. J. Mol. Biol. .93349’350- Silver, 8. D., E. E. M. Moody, and R. C. Clowes. _ 1965. Limits on material transfer during F+ X F matings in Escherichia coli K12. J. Mol. Biol. EE:283-286. Stallions, D. R., and R. Curtiss. 1971. Chromosome transfer and recombinant formation with deoxyribo- nucleic acid temperature-sensitive strains of Escherichia coli. J. Bacteriol. EEE:886-895. Taylor, A. L., and C. D. Trotter. 1967. Revised linkage map of Escherichia coli. Bacteriol. Rev. EE:332-353. Valentine, R. C., P. M. Silverman, K. A. Ippen, and H. Mobach. 1969. The F-pilus of Escherichia coli. Advan. Microbiol. Physiol. E:l-52. 143 94. Vapnek, D., and W. D. Rupp. 1970. Asymmetric segre- gation of the complementary sex-factor DNA strands during conjugation in Escherichia coli. J. Mol. Biol. EE:287-303. 95. Vinograd, J., J. Lebowitz, R. Radloff, R. Watson, and L. Laipis. 1965. The twisted circular form of polyoma viral DNA. Proc. Nat. Acad. Sci. EE:1104-1111. 96. Vogel, H. J., and D. M. Bonner. 1956. Acetylorni- thinase of Escherichia coli. Partial purification and some prOperties. J. Biol. Chem. 218:97-106. 97. Walker, E. M., and J. Pittard. 1970. Conjugation in Escherichia coli: Interactions affecting recombi- nation frequencies for markers situated at the leading end of the donor chromosome. J. Bacteriol. EEE:547-551. 98. Waring, M. J. 1965. Complex formation between ethidium bromide and nucleic acid. J. Mol. Biol. EE:269-282. 99. Willetts, N., and P. Broda. 1969. The Escherichia coli sex factor. Bacterial Episomes and Plasmids. p. 32-48. 100. Willetts, N. 8., A. J. Clark, and B. Low. 1969. Genetic location of certain mutations conferring recombination deficiency in Escherichia coli. J. Bacteriol. 21:244-249. 101. Yan, Y., and M. Demerec. 1965. Genetic analysis of pyrimidine mutants of Salmonella typhimurium. Genetics. ‘EE:643-651. EU M'TIIIIIIITIIEIIIIIIMILTTQIIIIQTIIIII“ 3