LIBRARY ; fffii’ESiS MlChigan State Univcrsuy This is to certify that the thesis entitled POSSIBLE SYNTHETIC PATHWAYS TO MODELS OF THE METAL COFACTORS OF NITROGENASE presented by Robert Hugo Tieckelmann has been accepted towards fulfillment of the requirements for M.S. Chemistry degree in mam Major professor Date 'l/1/?j/ 0-7639 POSSIBLE SYNTHETIC PATHWAYS TO MODELS‘ OF THE METAL COFACTORS 0F NITROGENASE BY Robert Hugo Tieckelmann A THESIS Submitted to Michigan State University . in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Department of Chemistry 1978 ABSTRACT POSSIBLE SYNTHETIC PATHWAYS TO MODELS OF THE METAL COFACTORS OF NITROGENASE By Robert Hugo Tieckelmann Methods for synthesis of potential models for the metal cofactors of nitrogenase have been investigated. These include Fe4S4 clusters coordinated by: (1) metallo- cenes, Fe4S4(SR)4_n[(SEt)2TiCp2]§2'n)' and Fe4s4(sn)4_n(szriCp2)§2+n)'; (2) thiomolybdate bridges, (RS)384Fe4(SZMoSZ)Fe4S4(SR)§-; and (3) a tripod, Fe4s4(SR)[(s-g-C6H4-NH)3P=O]Z‘. Isolation of analytically pure crystals has not yet been achieved, but the thiomolybdate—bridged entity has been observed and par- tially characterized spectroscopically in solution. Nmr spectroscopy shows the coordinated thiolate ligands of the Fe4S4 clusters may be removed upon the addition of a suitable proton donor. This technique has been used to force the Fe4S4 clusters to bind the selected ligands. Results from attempted syntheses of the titanocene-bound Fe4S4 clusters indicate that formation of polymers, varied substitution products, and rearrangements hinder prepara- tion of the desired compounds. These conditions also hin- der preparation of the thiomolybdate-bridged Fe4S4 clus- ters. A tripod ligand was synthesized to eliminate these Robert Hugo Tieckelmann problems; it may provide another metal cofactor model. A discussion of future plans is included. To George and Betty for their support, inspiration, and dedication to the education of their children ii ACKNOWLEDGMENTS I would like to extend my thanks to Bruce Averill for suggesting this project. His patience and particularly his guidance on experiment details, interpretation of their results, and his encouragement in meeting the requirements necessary for the completion of this degree are sincerely appreciated. Drs. Carl H. Brubaker, Jr., Frederick H. Horne, Thomas J. Pinnavaia, and Gerald T. Babcock deserve my gratitude for their special advice and encouragement long before this project's inception. I would like to thank H. Craig Silvis for his friend- ship, advice, and helpful time-consuming discussions. Many thanks to Kathryn Nyland for completing my fig- ures with the special care and expertise only she could provide. A very special thanks to Alice (Dallas) Ridky. Her organization and patience with my general ineptitude for organization made reaching the thesis deadline a certainty instead of a possibility. Again, I want to express my sincere admiration for my parents' devotion to my goals. iii TABLE OF CONTENTS List of Figures A. B. INTRODUCTION. EXPERIMENTAL. 1. Materials and Methods 2. General Preparations. a. b. Synthesis and Purification of Precursors. Method of Removal of Coordinated Thiolate Ligand from an Fe-S Tetrameric Cluster. Method for the Preparation of the Metallocene-Bound Tetrameric Species. Method for the Preparation of the- Thiomolybdate-Bridged Species Method for the Preparation of the Tripod- Bound Species . . . . . . . . . . . 3. Analyses. a. b. Micro-Assay for Molybdenum. Iodimetric Titration of the Tripod Ligand. RESULTS AND DISCUSSION. 1. Removal of the Coordinated Thiolate Ligand from an Fe-S Tetrameric Cluster . . 2. The Metallocene-Bound Species a. bis(nS-cyclopentadienyl)bis(ethane- thiolate)titanium (IV). . . . . . iv Page vi 10 10 13 14 16 17 17 17 19 20 20 30 31 D. b. bis(n5- cyclopentadienyl)bis(hydrogen- sulfide)titanium (IV) . . 3. The MoSfi'-Bridged Species 4. The Tripod-Bound Species. CONCLUSIONS AND PLANS FOR FUTURE WORK . BIBLIOGRAPHY AND NOTES. 37 44 59 67 71 Figure ZaEZb LIST OF FIGURES The displacement experiment6 effects the removal of iron- sulfur (Fe- S) dimeric and tetrameric clusters from the Fe protein. Results of ligand substitution experiments31 indicate that the Fens“ core has the greatest affinity for aryl thiol functionalities. The addition of HMPA and the Tris-HCl buffer denatures or unfolds the protein. With the protein in the unfolded state the thiol is able to enter the active site and begin the substitution process by protonating the bio- logical ligand. Large excesses of thiophenol were employed to shift the substitution proc- ess equilibrium and favor formation of FenSn (8— Ph)? Each figure is a nuclear magnetic resonance spectrum in d6-DMSO (99%-d). Figure 2a is the control spectrum of the tetramer, (64A5)2[Feu8“(8- t- Bu)u]. The resonance at = 7. 73 corresponds to the aryl protons; the resonance at 6 = 2.50 corresponds to the sol- vent impurity peak. Figure Zb is a spectrum of tetramer and (ouAs)2MoSH [2:1]. The two resonances present in Figure 2a are visible (aryl, 6 = 7.72; impurity, 6 = 2.48), how- ever the desired reaction has not taken place as substantiated by the lack of "free" t- butyl- thiol proton resonances (6 m 1.2)" The electronic spectra display the changes in the primary absorption peak of (¢HAs)2[FeuSk(S- t- -Bu)u] upon the addition of a proton donor (pyridinium chloride). In the control spectrum (tetramer in acetonitrile, --—-—) the (¢QAs)2[FegS (S- t- -Bu)u] absorbs at 420 nm initially. On addition of a proton donor the 420 nm absorption shifts to higher energy (tetramer and pyridinium chloride in acetonitrile, ) and absorbs at 400 nm. vi 21 25 Figure Page 4aa4b Each figure is a nuclear magnetic resonance spectrum in d3-acetonitrile (99%-d). Figure 4a is the control spectrum of the tetramer, (okAs)2[FeuSu(S—t-Bu)g]. Figure 4b exhibits the addition of T.1 equivalents of 2,4,6- trimethylpyridiniumhexafluorophosphate to 1.0 equivalent of the tetramer. . . . . . . . 27 5 Proposed structure for the metallocene-bound species (a) . . . . . . . . . . . . . . . . . 32 6a§6b Each figure is a nuclear magnetic resonance spectrum. Figure 6a is the control spectrum of 1.0 equivalent of ligand, szTi(SEt)2, and 1.2 equivalents of proton donor, 2,4,6- trimethylpyridiniumhexafluorophosphate in dS-dimethylsulfoxide (100%-d). Figure 6b is a 1.0:l.0:0.55 equivalents ratio of tetramer, (ouAs)2[FeuSu(S-t-Bu)k], ligand and proton donor in dS-dimethylsulfoxide. The reso- nances of either the ligand or the conjugate base of the proton donor were not shifted . . 35 7 PrOposed structure for the metallocene-bound species (b) . . . . . . . . . . . . . . . . . 38 8a,8b, Each figure is a nuclear magnetic resonance and 8c spectrum in dl-chloroform (100%-d). Spectrum 8a is the control spectrum of szTi(SH)2 with the two resonances in an intensity ratio of 5:1 and identified in units of 6 (delta). Spectrum 8b indicates that addition of tri- ethylamine does not effect the removal of the thiol proton of CpZTi(SH)2, intensity ratios: 5:1 for szTi(SH)2 and 2:3 for triethylamine. Spectrum 8c indicates that addition of proton sponge does not effect the removal of the thiol proton of szTi(SH)2 either, intensity ratios: 5.1:1, szTi(SH)2 and 12:26z4 for proton sponge 42 9 Proposed structure of the thiomolybdate-bound species . . . . . . . . . . . . . . . . . . . 46 vii Figure Page 103 8 Each figure is a nuclear magnetic resonance 10b spectrum in dG-dimethylsulfoxide (100%-d) with resonances in units of 6 (delta). Fig- ure 10a is the control spectrum of tetramer and thiomolybdate ligand in an equivalents ratio of 2:1. Addition of a proton donor to a mixture of tetramer and the thiomolybdate ligand effects the release of Efbutyl thiol. Figure 10b is the nmr spectrum of this phenomena, intensity ratios: 8:26:11 for aryl:"bound" t-buty1:"free" alkyl thiol (the pyridine hydrogens are obscured by the large aryl resonance) . . . . . . . . . . . . . . . 48 11 All of the following optical spectra are recorded in dry, degassed acetonitrile. In spectrum A the thiomolybdate absorbs at 318 nm (a 17,000) and 468 nm (8 12,000), in spectrum B the tetramer absorbs at 310 nm (a 21,800) and 419 nm (8 16,700). Spectrum C displays the results of combining 2 equiva- lents of pyridinium chloride with 2 equiva- lents and 1 equivalent of tetramer and thio- molybdate, respectively. The tetramer primary absorption has shifted to 398 nm, while the thiomolybdate primary absorption has also shifted to shorter wavelength . . . . . . . . 51 12 The electronic spectrum of 2:1:2 equivalents ratio Of (EtQN)2[FegSq(S‘-‘£'BU)L‘], (BtMN)2MCSI+ and Me3pyrHC1 in spectrograde dimethyl- acetamide (DMA). After initially mixing the reactants, the length of the absorption "shelf" increases with time, however subse- quent attempts at recrystallizing the solid obtained from this solution resulted in loss of the absorption feature . . . . . . . . . . 54 13a 5 Each figure is a nuclear magnetic resonance 13b spectrum in de-dimethylsulfoxide (99%-d) with resonances in units of 6 (delta). Figure 133 is the control spectrum of the solvent, the resonance at 2.45 is the solvent impurity. Figure 13b is the same 2:1:2 equivalents ratio of tetramer, thiomolybdate, and tri- methylpyridiniumchloride present in Figure 12. Note the shift of the "bound" 3-butyl resonance from ca 2.58 to 1.32. The other viii Figure 14 15 proton resonances (tetraethylamine and tri- methylpyridine) have been obscured by both solvent impurity and the "bound" t- -buty1 protons . . . . . . . . . . Pr0posed structure of the tripod-bound species . . . The electronic spectra display the changes in the primary absorption peak of (¢kAs)2[FeqSu(S- t- -Bu)u] upon binding the tri- pod ligand, O= -P(- -NH- C 6H4-o- SH)3. In the con- trol spectrum (tetramer in DMA ——————) the (¢qAS)2[FegSg(S' t- BU)q] initially absorbs at 417 nm (e 16 ,7007. Addition of the tripod ligand shifts the 417 nm absorption to a lower energy absorption, 435 nm (tetramer and tripod in DMA ——~——~) ix S7 60 63 A. INTRODUCTION As future energy needs focus attention on the dwin- dling petroleum resources of our planet, research inter- ests increasingly concentrate on industrial processes where potential energy savings may be realized. One such area is nitrogen fixation, or more specifically, the cata- lyzed reduction of dinitrogen to ammonia. On an indus- 3H2 + N2 + 2NH3 (l) T = 450°C P = 350 atm catalyst = Fe/A1203/K20 trial scale this process is relatively inefficient (yields 520%) and requires large inputs of energy, often in the form of fossil fuels. The energy requirement is due both to the elevated temperatures and pressures necessary for the reaction to take place and to the requirement for hydrogen, obtained by the high temperature cracking of fossil fuels. Consequently, a great deal of recent research effort has been directed toward developing poten- tial alternative processes. In 1974 alone over 40 million tons (two billion moles) of ammonia were produced synthet- ically,1 all by the Haber-Bosch process (1). An entirely different process occurs in the biosphere. In bacteria and algae an enzyme, nitrogenase (Nzase), catalyzes a process that is chemically and energetically different to the Haber-Bosch process: lZATP + 6e- + 6H+ + N2 + 2NH3 + lZADP + 6Pi (2) T = ambient temperature of the cell P = atmospheric pressure catalyst = nitrogenase. This specific and more efficient reaction (typical of most biological reactions) occurs with the transfer of six electrons and the dephosphorylation of the magnesium com- plex of the nucleotide, adenosine triphosphate. The fact that conservative estimates project that bacteria and algae produce 120 million tons of ammonia annually coupled with the high specificity and relative efficiency of the biological process indicate that this path is worth inves- tigating. Understanding the catalyst, nitrogenase, is a necessary prerequisite to success in solving these econom- ical and petrochemical problems. An in depth understand- ing of the enzyme's structural and mechanistic aspects is needed; until recently, research in this area has been hindered by the extreme oxygen sensitivity of nitrogenase. Nitrogenase consists of two components: component I (the MoFe protein) and component II (the Fe protein).2 The Fe protein has a molecular weight of about 60,000 and is thought to contain two indistinguishable subunits.3 Assays have shown the presence of 4Fe and 4S= (acid labile sulfur) per molecule. Mossbauer4 and displacement stud- ies6 (Figure l) designate that the iron and sulfur are in S The function .the form of a single tetranuclear cluster. of the Fe protein in dinitrogen fixation has been deter- mined to be that of a one electron carrier and a binding site for MgATP.7 However, the actual site of reduction of dinitrogen is not the Fe protein,3 but the MoFe protein. The MoFe protein, larger and more complex than the Fe protein, has a molecular weight of approximately 240,000; current data point to an 6282 structure. Assays indicate m32Fe, ~3ZS=, and 1-2 molybdenum per molecule.3 Unlike the relative degree of certainty that surrounds the Fe protein's structure, the distribution of Mo and Fe among the MoFe protein's subunits are unknown. Spectroscopic and displacement experiments3 have shown the iron and sul- fur to be contained in three distinct types of unit:8 (1) P-clusters, which.are tetranuclear species similar to the unit found in the Fe protein, but with one iron atom spectroscopically distinct from the others; (2) MEPR clus- ters containing 6 to 8 Fe and 1 Mo, with the characteris- tic S = 3/2 EPR of the MoFe protein; and finally, (3) an Aunknown Fe-S species thought possibly to be dimeric (FeZSZ) units. Known iron-sulfur species exist in mono, di and tetranuclear forms and are prepared from simple Figure l. The displacement experiment6 effects the removal of iron-sulfur (Fe-S) dimeric and tetrameric clus- ters from the Fe protein. Results of ligand substitution experiments31 indicate that the Fens“ core has the great- est affinity for aryl thiol functionalities. The addition of HMPA and the Tris-HCl buffer denatures or unfolds the protein. With the protein in the unfolded state the thiol is able to enter the active site and begin the substitu- tion process by protonating the biological ligand. Large excesses of thiophenol were employed to shift the substi— tution process equilibrium and favor formation of FenSn(S-Ph)E'. H opswwm ANNE quNflgV xaamUAQOUmouuuomm voNfiuouompmsu e .mofioomm woNfimogucxm xamsofi>ohm m ma .AHUYIm amcom :5 1O .. mmouxo wfiom OOH v a a .\\ w u :9 ©Lu. m on A 82-3.; is £398 me -E 13.0 (12) szri(sn)s‘ : szTi(S); + H+ (13) the first dissociation must be difficult, requiring an organic base with a pr < 1.0 to remove the first proton. Since the acidity of CpZTi(SH)2 has not been investigated, the conditions necessary for the removal of the second 42 Figures 8a, 8b, and 8c. Each figure is a nuclear magnetic resonance spectrum in dl-chloroform (100%-d). Spectrum 8a is the control spectrum of szTi(SH)2 with the two reso- nances in an intensity ratio of 5:1 and identified in units of 6 (delta). Spectrum 8b indicates that addition of triethylamine does not effect the removal of the thiol proton of szTi(SH)2, intensity ratios: 5:1 for CpZTi(SH)2 and 2:3 for triethylamine. Spectrum 8c indi- cates that addition of proton sponge does not effect the removal of the thiol proton of szTi(SH)2 either, inten- sity ratios: 5.1:1, CpZTi(SH)2 and 12:26:4 for proton sponge. 43 ‘ Figure 8a ’ A 4L; A ‘M A ‘ VVVTr‘ w W W r—w—V vv Figure 8b [l *[Jle ITEM 1 1 111 1 1 1 1 1 I Figure 8c 44 thiol are unknown and could result in the destruction of the metallocene. However, if the szTi(SH)Z is to bind to the Fe4S4 core, its thiol protons must exhibit facile exchange with the organic base and the thiolate ligands of the cluster. Unfortunately, neither of the titanocene derivatives gave any physical evidence for binding to the Fe4S4 cluster. The experience gained by the study of titanocene derivatives should expedite the transition to work entailing molybdocene derivatives. Indeed, the prob- lems encountered might be due to titanium's chemical behavior (for example the szTi(SH)2 and the szTi(SEt)2 are both photo-sensitive), and parallel situations may not occur with molybdenum. Molybdenum's presence in nitro- genase and its proximity to an Fe4S4 core indicate that all future synthetic work deal with coupling dithiolate derivatives of molybdocene to Fe-S tetrameric clusters, in spite of the difficulties involved in the molybdocene derivatives preparation. 3. The MoSi--Bridged Species 2- 2- 2Fe4S4(SR)4 + Mos4 + 2Me3pyrHC1 + (RS)3Fe4s4(Mos4)Fe4s4(SR)3‘ + ZRSH + ZMeSpyr + 2c1’ (14) 45 The isolation and characterization of the iron- molybdenum cofactor (FeMoco) of nitrogenasels’14 initiated efforts directed at synthesizing the Mo-bridged species (Figure 9) in which two tetrameric Fe-S clusters are joined by a thiomolybdate bridge. The plausibility of this species as a potential model for the metal cofactor was enhanced by the subsequent appearance of extended x- 12 which were ray absorption fine structure (EXAFS) data, interpreted as showing that the metal cofactor contained a molybdenum atom surrounded by S-Fe-S units. The con- ceptual drawing in Figure 9 portrays this structural unit, including the Mo-S-Fe segment described in Section 2. The thiomolybdate anion, prepared from simple reagents in high yield,21’22 can act as a dinegative bidentate ligand that would bridge two Fe4S4 clusters. Its affinity for the Fe S4 core was found to be less than 4 that of t-butyl mercaptide (see below). Consequently, to make coordination feasible a proton donor was required to release the coordinated thiolate ligand. Figure 10a (d6- DMSO) is a spectrum of a solution containing a 2:1 mixture of (¢4As)2MoS4 (thiomolybdate) and (¢4As)2[Fe4S4(S-t-Bu)4] (tetramer) [7.72 (¢). 2.58 (bound tfbutyl), 3.25 (impur- ity); intensity ratio calculated for ¢= t-butyl, 80:36; found 80:3343]; as predicted, the free alkyl thiol (ca. 1.30) is not observed. The addition of one equivalent of pyridine hydrochloride effects the release of an 46 Figure 9. Proposed structure of the thiomolybdate-bridged species. 48 Figures 10a and 10b. Each figure is a nuclear magnetic resonance spectrum in d5—dimethylsulfoxide (100%-d) with resonances in units of 6 (delta). Figure 10a is the con- trol spectrum of tetramer and thiomolybdate ligand in an equivalents ratio of 2:1. Addition of a proton donor to a mixture of tetramer and the thiomolybdate ligand effects the release of t-butyl thiol. Figure 10b is the nmr spec- trum of this phenomena, intensity ratios: 8:26:11 for aryl:"bound" t-butyl:"free" alkyl thiol (the pyridine hydrogens are obscured by the large aryl resonance). 49 I I T T I T T I Figure 10a 1 1 J l I 1 1 l 8.0 00 Figure 10b 50 equivalent of free alkyl thiol [Figure 10b, d6-DMSO, 7.76 (¢). 2.58 (bound t-butyl), 1.32 (free thiol), pyridine hydrogens are obscured by the large ¢ resonance; intensity ratio calculated for ¢:bound t-butyl:free alkyl thiol, 80: 27:9, found 80:26:11]. Since both reactants have unique optical features 49,50 with known molar absorptivities, binding could be monitored spectrometrically, using two distinct properties of the system. First, it is known that binding of a metal ion to two sulfides of MoSi' induces a shift of the optical features to longer wavelength; coordination of all four sulfides will afford species in which MoSi' acts as a bridging ligand and the optical features shift to shorter 49 wavelength. The bridged species lacks terminal Mo-S entities; therefore the optical spectrum should also lack bands due to these features. Second, changing the coordi- nated ligands bound to the Fe4S4 core causes a correspond- ing shift of the primary absorption peak (417 nm for most 31 alkyl thiol ligands) of the core. An optical experiment resulted in the spectra shown in Figure 11. Spectrum A is that of a solution containing 1.0 equivalent of 49 (¢4As)2MoS4 [literature in H20; nm (M'lcm'l x 10’4), 467 (1.2), 317 (1.7), 242 (2.4); found in spectro- acetonitrile; nm (e not determined), 468, 318, 243]. Spectrum B is that of a solution containing 2.0 equiva- lents of (¢4As)2[Fe4S4(S-£-Bu)4] [literature50 in 51 Figure 11. All of the following optical spectra are recorded in dry, degassed acetonitrile. In spectrum A the thiomolybdate absorbs at 318 nm (6 17,000) and 468 nm (a 12,000), in spectrum B the tetramer absorbs at 310 nm (8 21,800) and 419 nm (a 16,700). Spectrum C displays the results of combining 2 equivalents of pyridinium chloride with 2 equivalents and 1 equivalent of tetramer and thiomolybdate, respectively. The tetramer primary absorption has shifted to 398 nm, while the thiomolybdate primary absorption has also shifted to shorter wavelength. SZ LOP+ Each spectrum is shifted 0.15 absorbance unit at 620 nm. (18- O£P- CM:— (IZF- B (10 J. 11 A L 220 300 380 60 540 620 4 Mom) Figure 11 53 -1 spectro-DMF; nm (M_1cm x 10-4 ), 417 (1.67), 303 (2.18); found in spectro-acetonitrile; nm (e not determined), 419, 310]. Mixing of tetramer and thiomolybdate in a 2:1 mole ratio, followed by the addition of 2.0 equivalents of pyridine hydrochloride, shifted the 419 nm absorption of the tetramer to 398 nm but left the 310 nm peak and the relative intensities almost unchanged (spectrum C of Fig- ure 11). The lack of any spectral features attributable to the thiomolybdate (the loss or shift of both the 468 nm and 318 nm absorption peaks) coupled with the shift of the tetramer's 419 nm absorption suggested that the desired species containing bridging SzMoS2 units may have been formed. There is no evidence for bidentate MUSE-.51 A preparative scale experiment was therefore carried out. A search for a solvent or a solvent system suitable for dis- solving all species resulted in the use of a minimum of acetonitrile/N,N-dimethylacetamide/N-methylformamide to dissolve the tetramer and thiomolybdate. The proton donor, Me3pyrHCl (in acetonitrile), was introduced into the tetramer/thiomolybdate solution via cannula. Progress of the reaction was followed spectrophotometrically; the final electronic spectrum is shown in Figure 12. After a few hours stirring, the products were precipitated with a ten-fold volume excess of tetrahydrofuran. Initial attempts at recrystallization resulted in isolation of the starting material (tetramer) characterized by optical spectrum and melting point. 54 Figure 12. The electronic spectrum of 2:1:2 equivalents ratio of (Eth)2[Feu84(S-t-Bu)q], (EtuN)2MoSu and MegpyrHCl in spectrograde dimethylacetamide (DMA). After initially mixing the reactants, the length of the absorption "shelf" increases with time, however subsequent attempts at recrystallizing the solid obtained from this solution resulted in loss of the absorption feature. 55 000 NH chum“; cpzex oon _ _ 00v 00» 0.0 56 Was the molybdenum ever present in the form of a 2- 4 bands due to reduction of molybdenum to another soluble bridged complex, or was the disappearance of MoS molybdenum complex? The micro-assay for molybdenumsz was employed (with suitable controls), and the results indi- cated that a significant amount of molybdenum was present (theoretical in sample: 4.3 x 10'4 4 gram Mo, found in sample: 1.1 x 10- gram Mo) in the crude unrecrystallized products mentioned above. In addition, nmr spectra of the crude product also exhibited a shift of the bound thiolate ligand resonance (6 = ca. 1.2 vs. 6 = ca. 2.8) to lower field, indicative of a substantial change in the environ- ment of the Fe4S4 core (Figure 13). However, efforts to recrystallize this material have proved futile. The elec- tronic spectra show shift of the primary absorption peaks back to values characteristic of starting material, indi- cating that rearrangements, not decomposition, are occurring. One possible solution to this problem would be to bind a tridentate (tripod) ligand to the Fe4S4 cluster, so as to tie up three of the four iron atoms with a high- affinity ligand. This would leave only one thiolate ligand free to participate in substitution reactions (in addition to providing a potential model for the P-clusters of nitrogenase). An attached tripod ligand could prevent polymeric species from forming and restrict rearrangements during attempts to synthesize both the molybdenum-bridged 57 Figures 13a and 13b. Each figure is a nuclear magnetic resonance spectrum in d6-dimethylsulfoxide (99%-d) with resonances in units of 6 (delta). Figure 13a is the con- trol spectrum of the solvent, the resonance at 2.45 is the solvent impurity. Figure 13b is the same 2:1:2 equiva- lents ratio of tetramer, thiomolybdate, and trimethyl- pyridiniumchloride present in Figure 12. Note the shift of the "bound" t-butyl resonance from ca 2.58 to 1.32. The other proton resonances (tetraethylamine and tri- methylpyridine) have been obscured by both solvent impurity and the "bound" t-butyl protons. 58 WW 1 Figure 13a 1 L l J l l I 8.0 Figure 13b 0.0 59 and metallocene-bound species. A discussion of the tripod and biological significance of synthesis of the tripod- bound species follows. 4. The Tripod-Bound Species 2- .. Fe4S4(SR)4 + O-P(NH-C ~g-SH)3 + 6H4 Fe4S4(SR)[(S-g-C H4-NH)3P=O]2' + 3RSH (15) 6 The synthetic feasibility of utilizing a tri- dentate ligand to irreversibly replace three thiolate ligands of an Fe4S4 cluster has been briefly discussed. In addition, component I (MeFe protein) of nitrogenase has 3 to contain tetra- been shown by displacement experiments meric Fe-S clusters (P-clusters) that appear to be tetra- nuclear species where one iron is found to be distinct 54 Due to the from the others by Mossbauer spectroscopy. equivalence of ligand sites on iron-sulfur tetramers, substitution of less than four thiolates results in a com- plete statistical distribution of products: mono, bis, tris, and tetrakis. This phenomenum prevents synthesis of a model for P-clusters through a simple ligand substitu- tion reaction with three equivalents of thiophenol. How- ever, successful binding of a tripod-type ligand to an Fe4S4 core would provide the first model of this unusual S4 cluster type. Results of ligand substitution 60 Figure 14. Pr0posed structure of the tripod—bound species. 62 31 experiments indicate that the Fe S core has the great- 4 4 est affinity for aryl thiol functionalities. This prompted the attempts at the synthesis of the species described in the experimental section.' Unlike the ligands previously discussed, the tripod should Spontaneously and rapidly displace the coordinated alkyl thiolate from [Fe4S4(S-t-Bu)4]2-, with concomitant formation of three equivalents of t-butylthiol. The tripod ligand proved to be insoluble in most 53 Nmr studies of the combination common organic solvents. of the tripod ligand with the tetrameric cluster, requiring high concentrations, were therefore precluded, and the emphasis shifted to optical studies. It was here that the first evidence for reaction (15) was observed. The primary electronic absorption of the tetrameric clus- ter shifted from its normal position (417 nm) out to approximately 435 nm (Figure 15). This behavior is simi- lar to that observed for the substitution of thiophenol 31 for other ligands on Fe-S tetrameric clusters. However, the spectrum displays a feature which may indicate that polymeric forms of the cluster are present:55 a very gradual rise to the primary absorption instead of a sharper rise present in the parent compound (Figure 15). A preparative scale experiment (experimental section) showed a more significant shift of the primary absorption to 445 nm, but the long wavelength absorption was still 63 Figure 15. The electronic spectra display the changes in the primary absorption peak of (¢4A$)2[Feg8g(8't'BU)g] upon binding the tripod ligand, O=P(—NH-C6Hu-g-SH)3. In the control spectrum (tetramer in DMA ——————) the (oyAs)2[Fe(Su(S-t-Bu)u] initially absorbs at 417 nm (a 16,700). Addition of the tripod ligand shifts the 417 nm absorption to a lower energy absorption, 435 nm (tetramer and tripod in DMA 64 mH mesa“; AEcI .nxyv 0.0 Nd v.0 @d 0.0 0.. 65 present. However, overnight stirring of a combination of an acetonitrile solution of tetramer with a slurry of tri- pod in the same solvent resulted in complete dissolution of both species, indicating that a reaction had occurred. Continued stirring produced a fine material, silky or micro-crystalline, with a metallic lustre. This material was collected but attempts at recrystallization proved futile, and the solid eventually decomposed. The possi- bility of the tripod ligand forming disulfides is clear. Presence of a disulfide, whether intra- or intermolecular, could inhibit the formation of the desired product and result in the occurrence of detrimental side reactions, perhaps the formation of polymers through rearrangements. Alkyl mercaptans have the ability to reduce aryl disul- fides; introduction of a twenty-fold molar excess of £- butylmercaptan to a pale yellow tripod solution (aceto- nitrile) resulted in the instantaneous change to a clear solution. This result coupled with the long wavelength absorption of the tetrameric product prompted an iodo- metric titration to determine the extent to which the disulfide had formed. No further experiments were attempted because the tripod was found to contain just short of one-third of the necessary thiol functionalities. An x-ray structure study of the ligand is currently under- way in order to ascertain its exact spatial configuration. Future work will entail altering the basic skeleton of the 66 tripod ligand in an effort to increase its solubility and decrease its ability to form disulfides. Under considera- tion is alkyl substitution in positions meta and para_to the sulfur functionality; this would increase solubility by making the ligand's backbone hydrophobic. Also, a suf- ficiently large alkyl group (t-Bu or i-propyl) would create steric hindrance that could ultimately prevent formation of polymeric entities. Solution of the problems surrounding successful binding of the tripod ligand to the Fe4S4 core will enable relevant synthetic investigation to continue. The mono— substitution of the cluster with metallocene derivatives and bridging of two clusters with thiometallate ligands are of special interest. D. CONCLUSIONS AND PLANS FOR FUTURE WORK A series of experiments has been performed in an effort to devise pathways to the preparation of compounds related to the metal cofactors of nitrogenase. As a pre- lude, the method for release of alkyl-thiolate ligands coordinated to the iron-sulfur tetranuclear core, neces- sary for the binding of ligands with potential catalytic and biological importance, has been examined in detail. Subsequent research efforts has been directed toward these goals: 1. The synthesis of compounds that combine metal complexes of potential catalytic activity (e.g., metallo- cene dithiolates, tetrathiometallates) with iron—sulfur clusters that play a role in biological nitrogen reduc- tion. Although the structure and reactivity of the desired compounds may not exactly mimic that of any bio- logical unit, their chemical and physical properties may shed some light on the properties of similar units in biological systems; further, such compounds may be of interest in their own right as potential catalysts. 2. The synthesis of molecules that closely coincide with the available data concerning the stoichiometry of the FeMoco. Characterization and subsequent study of these compounds will help answer some of the questions involving the structure and role of the metal cofactors in biological dinitrogen fixation. 67 68 3. The preparation of a cluster bound by a large tridentate (tripod) ligand; this may provide a model for the P-clusters of nitrogenase, as well as furnish a means of avoiding the problems encountered in the preparation of the above compounds (rearrangements, polymer formation, multi-substitution). Work on the metallocene-bound iron-sulfur clusters has not yet resulted in the isolation of the desired com- pounds; hence a major revision of the synthetic approach is necessary. As previously discussed, the reaction of the Fe4S4 core with molybdocene derivatives, in lieu of their titanocene analogs, will be examined. The potential model of the FeMoco, two iron-sulfur clusters bridged by a thiomolybdate, approximates the stoichiometry (m8Fe, ~65=/ Mo atom) and at least a portion of the proposed structure (Mo-S-Fe-S segments) of the metal cofactor more closely 15’16 Since than the two Mo-Fe-S species reported to date. the thiomolybdate bridged species has only been charac- terized spectroscopically in solution, efforts to produce a pure crystalline solid will continue. Included in the problems that hinder synthesis of these compounds are those of rearrangements to less suitable species, forma- tion of insoluble polymers, and formation of multiple substitution products. The tripod ligand was designed to minimize these concerns. Insolubility of the tripod and its formation of intra- and/or intermolecular disulfides 69 have been major problems in its utilization. While the structure of the tripod is being determined by x—ray crystallography, the design and synthesis of a more soluble tripod ligand is being considered. The tripod- bound species should simplify the synthesis of iron—sulfur clusters with metallo-ligands by favoring substitution at only one iron. Future work with the metallocenes may include binding the metallocene derivatives of other metals (e.g., Zr, Nb, Ta, W) to an iron-sulfur tetranuclear core and studying the effect of changing size and number of d electrons on the new systems. Since many of these metallocene ligands 39 upon reduc- are known to bind small molecules [N2, CO] tion, the generation of lower oxidation states by electro- chemical and chemical means will be investigated, as will the reactivity of any of the species produced with CO, N2, etc. If necessary, the pentamethylcyclopentadienyl derivatives will be prepared to avoid the n-o rearrange- 56 Of interest ments common for reduced M-Cp complexes. with regard to the FeMoco would be the use of thiotung- state instead of thiomolybdate in the preparation of the bridged species; the effect of the substitution on the physical and electronic properties of the metallate-bound iron-sulfur tetranuclear cluster could be examined. Some future effort will be directed toward preparation of per- substituted (Fe4S4LE’) metallocene and metallate 70 complexes. Recently in our laboratory, while this thesis was being written, H. C. Silvis has been successful in preparing a tetra-substituted thiomolybdate cluster, [Fe4S4(SZMoSZ)4]6-, using the methods outlined here. While of indirect biological significance, examination of these compounds will contribute to our understanding of the Fe—Sz-M unit. Four metallo-ligands coordinated to an Fe4S4 core may also prove to be of catalytic interest. Other tripod types being considered, exclusive of those previously mentioned, are those that will bind through an oxygen terminus (phenol, carboxylate, etc.) instead of through sulfur. Iron-sulfur clusters are capable of bind- ing oxygen functionalities,S7 and while their biological significance is limited, the ability to preferentially effect other metallo-ligand substitution reactions at one iron will be of synthetic and catalytic importance. Finally, isolation of analytically pure crystalline solids will subsequently entail many physical and chemical studies. Among studies performed will be an x-ray struc- ture determination, electrochemical, spectrosc0pic, and binding studies. BIBLIOGRAPHY AND NOTES 11. BIBLIOGRAPHY AND NOTES G. N. Schrauzer, Chemistry, 2g, 13 (1977). A. L. Lehninger, Biochemistry, Second Edition, 1975, Worth Publishers, pp. 720-722. W. H. Orme-Johnson, L. C. Davis, M. T. Henzl, B. A. Averill, N. R. Orme-Johnson, E. Munck, and R. Zimmerman, "Components and Pathways in Biological Nitrogen Fixation”, Recent Developments in Nitrogen Fixation (W. Newton, 3. R. Postgate,TL. Rbdriguez- Barrenco, Editors), Academic Press, New York, N.Y. (1977). B. A. Averill, J. Rawlings, and W. H. Orme-Johnson, manuscript in preparation. W. H. Orme-Johnson, Ann. Rev. Biochem., ii, 159 (1973). R. H. Holm and J. A. Ibers, "Iron Sulphur Proteins" (W. Lovenberg, Editor), Vol. 3, Academic Press, New York, N.Y. 4 W. H. Orme-Johnson, L. C. Davis, M. T. Henzl, N. R. Orme-Johnson, E. Munck, and R. Zimmerman, manuscript submitted for publication. J. Rawlings, V. K. Shah, J. R. Chisnell, W. S. Brill, R. Zimmerman, E. Munck, and W. H. Orme-Johnson, J; Biol. Chem., 253, 1001 (1978). R. H. Holm, Accts. Chem. Res., 12, 427 (1977). W. H. Orme-Johnson, G. 8. Jacob, M. T. Henzl, and B. A. Averill, Advances in Chemistry Series No. 162, Bioinorganic Chemistry II, 1977, p. 389. S. P. Cramer, K. O. Hodgson, W. O. Gillum, and L. E. Mortenson, J.A.C.S., 100, 3398 (1978). 71 12. 13. 14. 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 72 S. P. Cramer, W. O. Gillum, K. O. Hodgson, L. E. Mortenson, E. I. Stiefel, J. R. Chisnell, W. J. Brill, and V. K. Shah, J.A.C.S., 100, 3814 (1978). V. K. Shah and W. J. Brill, Proc. Natl. Acad. Sci. USA, ii, 3249 (1977). P. T. Pienkos, V. K. Shah, and W. J. Brill, Proc. Natl. Acad. Sci. USA, lg, 5468 (1977). T. E. Wolff, J. M. Borg, C. Warrick, K. O. Hodgson, R. H. Holm, and R. B. Frankel, J.A.C.S., 100, 4630, (1978). G. Christon, C. D. Garner, and F. E. Mabbs, Inorg. Chem. Acta, 2;, L189 (1978). R. E. Eibeck, Inorg. Syn., ;, 128 (1963). H. Koepf and M. Schmidt, Z. Anong.Allem. Chem., 340, 139 (1965). H. Koepf and M. Schmidt, Angew. Chem., ll, 21 (1965). B. A. Averill, T. Herskovitz, R. H. Holm, and J. A. Ibers, J.A.C.S., 2;, 3523 (1973). J. L. Carleis, Ann. Chem., 232, 259 (1886). Kruss, ibid., 225, 29 (1884). Purity is arbitrarily gauged by measuring the depth of the valley following the initial tetramer absorption (N420 nm, e = 17,400). A value that is >10% of the absorbance value of the 420 nm peak is acceptable. See Figure l. The pyridinium salt should be added dropwise. Approximately 1 drop of solution every 5-10 seconds. Adopted from Anal. Chem., i;, 2000 (1955) and a con- tribution from W. H. Orme- ohnson, University of Wisconsin-Madison. Thioglycolic acidsmercaptoacetic acidEH-S-CHz-COZH. Clarity of the solution denotes lack of traces of HCl, HN03, and HBr. 28. 29. 30. 31. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 73 Skoog and West, Fundamentals of Chemical Analysis, Second Edition, 1969} p. 453. Kolthoff, Sandell, Meehan, and Bruckenstein, Quanti- tative Chemical Analysis, Fourth Edition, 1971, pp. 842 and 859. . A discussion of the phenomena will follow. L. Que, Jr., M. A. Bobrik, J. A. Ibers, and R. H. Holm, J.A.C.S., 32, 4168 (1974). 7, 528 (1975). G. R. Dukes and R. H. Holm, J.A.C.S., T. Herskovitz, B. A. Averill, R. H. Holm, J. A. Ibers, W. D. Phillips, and J. F. Weiher, Proc. Natl. Acad. Sci. USA, 22, 2437 (1972). Cotton and Wilkinson, "Advanced Inorganic Chemistry", Third Edition, Interscience Publishers, 1972, p. 864. M. A. Bobrik, R. H. Holm, and K. O. Hodgson, Inorg. Chem., gg, 1851 (1977). G. B. Wong M. A. Bobrik, and R. H. Holm, Inorg. Chem., ;;,’578 (1978). "Handbook of Chemistry and Physics", 54th Edition, CRC Press, 1973-1974, p. D-128. Integrations based on the ¢uAs (7.70) peak of the tetramer, the free thiol peak (1.36), and the 9- methyl peak (2.35) of MegpyrHPFs. J. E. Bercaw, "Reduction of Molecular Nitrogen to Hydrazine at Titanium and Zirconium", ibid., ;, p. 25. A. R. Dias and M. L. H. Green, J. Chem. Soc. (A), 2807 (1971), and all references therein. 2,4,6-trimethylpyridine, Stadtler nmr #8015. R. H. Holm, W. D. Phillips, B. A. Averill, J. J. Mayerle, and T. Herskovitz, J.A.C.S., 22, 2109 (1974), Figure 1. Ibid., Figure 2. 44. 45. 46. 47. 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 74 Insoluble in (hot or cold) DMSO, DMF, THF, H20, CHC13, CH3CN, and acetone. A. J. Gordon and R. A. Ford, "The Chemists Com- panion", John Wiley and Sons, Inc., 1974, p. 59. Triethylamine, Stadtler nmr #29, 2.42 (CH2), 0.98 (C53)- Triethylamine-HBr, Stadtler nmr #268, 3.20 (C32), 1.45 (C33). Triethylamine-HCl, Stadtler nmr #9397, 3.21 (C32), 1.45 (CH3). N,N,N',N'-tetramethyl-l,8-naphthalenediamine, Stadtler nmr #13067, ca. 7.31 (3,4,5,6—H), 6.91 (2,7—5). 2.77 (Me). Because of the bound tfbutyl proton's proximity to the paramagnetic FeuSq core its nmr resonance is par- tially broadened into the baseline. A discrepancy of three protons in thirty-six is within experimental error. E. Diemann and A. Muller, Coord. Chem. Rev., 10, 79 (1973). B. V. DePamphilus, B. A. Averill, T. Herskovitz, L. Que, Jr., and R. H. Holm, J.A.C.S., 3;, 4159 (1974). Personal communications from H. C. SilVis. Experimental section. The tripod was soluble in DMA, DMF, NMF, HMPA. E. Munck, Rhodes, W. H. Orme-Johnson, L. C. Davis, W. J. Brill, and V. K. Shah, Biochem. Biophys. Acta, 400, 32 (1975). Private communication, unpublished results, Dr. B. A. Averill. Cotton and Wilkinson, "Advanced Inorganic Chemistry", Third Edition, Interscience Publishers, 1972, p. 761. R. W. Johnson and R. H. Holm, J.A.C.S., 100, 5338 (1978). All nmr data are in units of 6 (delta). 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