THESIS d" . .o' E. ~34 I t . g ’ g ‘ ~ ‘ ,_ I - ~ u~_ x": f;,".,‘_ t’)\~ v‘f k {$0.}ch ‘ .‘xxo' ...., - - t... . .. - y . .~ \‘. ’7' m - - ‘1 5 .-.; wag-m This is to certify that the dissertation entitled BRANCHED-CHAIN AMINO ACID METABOLISM IN CLOSTRIDIUM SPOROGENES presented by Daniel J. Monticello has been accepted towards fulfillment of the requirements for degree in Microbiology Ph.D. Datefl/Ai/fz 0-12771 M5 U is an Affirmative Action/Equal Opportunity Institution ,1” V1" '\ '1“le s t r ~ -n“.”’ ‘\ III’ OVERDUE FINES: 25¢ per du per 1ten RETURNING LIBRARY MATERIALS: Place in book return to remove charge from circulation records BRANCHED-CHAIN AMINO ACID METABOLISM IN CLOSTRIDIUM SPOROGENES BY Daniel Joseph Monticello A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Department of Microbiology and Public Health 1982 C..j /// [I —.. ABSTRACT BRANCHED-CHAIN AMINO ACID METABOLISM IN CLOSTRIDIUM SPOROGENES. BY Daniel Joseph Monticello Preliminary studies indicated that Q. sporogenes (ATCC 7955, NCA PA 3679) made isoleucine in a novel pathway not involving threonine or threonine dehydratase. Data herein show that radioactivity from [3-14C1pyruvate, [14C]propionate 14C] butyrate was incorporated into isoleu- and a-amino-[B- cine. Increasing concentrations of a-methylbutyrate re- duced the incorporation of [14C]pyruvate. Crude extracts of the bacteria grown in a minimal medium were found to contain levels of a-acetohydroxyacid synthase activities comparable to those found in cells of E. ggli K12 grown in minimal medium. Stepwise degradation of isoleucine labeled with specifically- labeled precursors supports the conclusion that g, sporogenes makes isoleucine via the reductive carboxylation of pro— pionate to yield a-ketobutyrate which is metabolized to isoleucine in the classical fashion, or isoleucine can be made via the reductive carboxylation of a-methylbutyrate to a-keto-B-methylvalerate. Clostridium sporogenes requires L-leucine and L-valine for growth in a minimal medium, although valine can be re- placed by isobutyrate, and leucine by isovalerate. Cells l4 grown in minimal media incorporated significant C-label 14 from [14C]va1ine into leucine and C-label from [14C]leucine into valine. These results indicate that these bacteria can interconvert leucine and valine. 14 l Considerable label from [ C]valine, [ 4C]leucine and [14C]isoleucine was incorporated into cellular lipid after growth of Q. sporogenes in a minimal medium, with six times more radioactivity from labeled valine than leucine or isoleucine being incorporated. It appears that branched- chain amino acids were an important source of the branched- chain fatty acids in the cellular lipid. The branched-chain amino acids were shown to be subject to non-specific oxida- tion to volatile fatty acids in an assay with whole cells, and isoleucine oxidative activity appeared to be inducible to some extent. DEDICATION This dissertation is dedicated to my parents, William and Kathleen, my siblings Tom, John, Anne Marie, Mike, Jim, George and Bob, and especially my partner, Elizabeth. Their support, encouragement and diversionary tactics made the difficult times bearable, and the good times wonderful. ii ACKNOWLEDGMENTS I wish to express my sincere gratitude to my major professor, Dr. R. N. Costilow, for his guidance throughout the course of this investigation. I would also like to express my thanks to Drs. H.L. Sadoff and R.R. Brubaker, for the use of their laboratories and equipment, and for their essential support and encouragement. iii TABLE OF LIST OF TABLES . . . . . . LIST OF FIGURES. . . . . . ORGANIZATION . . . . ... SECTION I INTRODUCTION . . . . LITERATURE REVIEW. . The Clostridia Costridium sporogenes. CONTENTS Branched-chain Amino Acid Synthesis. Reductive Carboxylations . Literature Cited . SECTION II Isoleucine synthesis from a-methylbutyrate propionate by Clostridium sporogenes . SECTION III Interconversion of valine and leucine by Clostridium sporogenes. iv Page vi . .viii or 17 20 26 60 Page SECTION IV APPENDICES: Incorporation of branched chain amino acids into cellular lipid. . . . . . . 74 Oxidation of branched-chain amino acids in vitro . . . . . . . . . . . . 77 Effect of a-methylbutryate on total growth . . . . . . . . . . . . . . . . 81 SECTION V SUMMARY. . . . . . . . . . . . . . . . . . . . 84 LIST OF TABLES TABLE PAGE LITERATURE REVIEW 1. Branch-point enzymes and their regulation in Escherichia coli . . . . . . . . . . . . . n 12 SECTION II 1. Incorporation of 14C-propionate into a-aminobutyrate . . . . . . . . . . . . . . . 41 2. Effect of propionate on the incorporation of _14 [U C] serine into isoleucine. . . . . . . . 42 3. Degradation of isoleucine from g, sporogenes grown in [3-14C1pyruvate, [1-14C1propionate and [2-14 C] propionate. . . . . . . . . . . . 45 SECTION III 1. Maximum growth in basal medium supplemented with amino acids and volatile fatty acids . . 64 2. Maximum growth in basal medium supplemented with volatile fatty acids . . . . . . . . ... 65 14 3. Incorporation of C into aspartate, glutamate, leucine and valine. . . . . . . . . . . . . . 67 vi LIST OF TABLES (cont'd.) Page SECTION IV 1. The incorporation of 14C-label into cellular lipid and protein . . . . . . . . . . . . . . 76 vii LIST OF FIGURES FIGURE PAGE LITERATURE REVIEW 1. Biosynthesis of branched-chain amino acids. . . 11 2. Known routes to isoleucine, via a-ketobutyrate. 15 SECTION II 1. Effect of a-methylbutyrate on the incorporation of [U-14C1pyruvate and 14CO2 into isoleucine. 36 2. Incorporation of a-amino-[3-14C] butyrate into amino acids. . . . . . . . . . . . . . . 37 3. Incorporation of [2-14C1propionate into amino acids . . . . . . . . . . . . . . . . . 39 4. A scheme for the degradation of isoleucine. . . 46 5. Proposed pathway for isoleucine synthesis in Clostridium sporogenes . . . . . . . . . . 51 SECTION III 1. Proposed pathway for the conversion of leucine to valine . . . . . . . . . . . . . . 7O viii 1. 2. 3. LIST OF FIGURES (cont'd.) SECTION IV The oxidation of L-isoleucine, L-valine and L-leucine to a-methylbutyrate, isobutyrate and isovalerate . . . . . . . . . . . . . . The effect of a-methylbutyrate on total growth. . . . . . . . . . . . . . . . . . . Separation of a-methylbutyrate and isovalerate by gas chromatography . . . . . . . . . . . ix Page 80 82 83 ORGAN I ZAT ION This dissertation is organized into five sections. Section I consists of an introduction and review of the re- cent literature pertinent to the research discussed. Sections II and III consist of manuscripts for a paper and a note for publication. Section IV consists of results obtained which are related to the research but not included in manuscripts. A summary of all the research is presented in Section V. SECTION I INTRODUCTION The proteolytic Clostridia are a diverse group of saprophytic organisms and commensal inhabitants of the in- testinal tract of animals. Clostridium sporogenes is often found in the soil, but is also encountered in contaminated food, and occasionally in necrotic tissue where g. tetani or C. perfringens have established an infections. 9. sporo- genes is physiologically indistinguishable from Q. botulinum type A, a causative agent of botulism poisoning. These attributes have made 9. sporogenes an important model for investigations of anaerobic physiology and energy metabolism. It was in _C_. sporogenes that Stickland first demon— strated the coupled oxidation and reduction of paired amino acids which is the principle source of ATP in many Clostridia and other anaerobes (24, 45). Much of our understanding of the unique strategies for amino acid catabolism employed by anaerobes comes from investigations with this species. Studies of biosynthetic pathways in the anaerobes are infrequent, largely due to the difficulties which arise when using the complex media required by most anaerobes for growth. The development in our laboratory of a simple de- fined medium for g. sporogenes (R.S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University) has allowed us to investigate some biosynthetic activities of this 1 organism. Hadioetomo found that while 9, sporogenes requires leucine and valine for growth, it does not require isoleu- cine. This was a surprising observation since in most mi- crobes these amino acids are produced via a common pathway (45). The threonine dehydratase (the first enzyme of iso- 1eucine biosynthesis in Escherichia coli) activity in Q. sporogenes was found to be catabolic in nature, and was not regulated by isoleucine in vitro. Cells grown in a minimal 14 14 medium incorporated label from C]serine and 14 coz, [ [3- C]pyruvate into isoleucine, but not from [14C1threonine. In addition, radioactive carbon from a-[14C1methylbutyrate was incorporated into isoleucine, presumably by reductive carboxylation to a-ketoB-methylvalerate and subsequent trans- amination. These observations led Hadioetomo to propose that isoleucine was produced via a novel pathway in g. sporogenes. The object of the experiments described in this dis- sertation was to elucidate branched-chain amino acid meta- bolism in Q. sporogenes. The principal goal was to determine the nature of the unusual pathway for isoleucine synthesis. The results indicate that one pathway to isoleucine origi- nates with propionate, which is reductively carboxylated to a-ketobutyrate. The condensation of a-ketobutyrate and pyruvate follows (catalyzed by acetohydroxyacid synthase), and isoleucine is then produced in the classical fashion. a-Methylbutyrate appears to be an alternate precursor of isoleucine. In addition, 9. sporogenes can interconvert leucine and valine when grown in appropriate media. The picture of branched-chain amino acid metabolism which emerges is considerably more complex than that seen in E. 921;. In addition to the drain on leucine, valine and isoleucine resulting from protein synthesis, 9, sporo- SEEEE must also contend with continuous non-specific oxi- dation of these amino acids for ATP generation. a-Ketoiso- valerate, the keto-acid analog of valine, is also the source of pantoate in the cell. All three branched-chain amino acids are liberally incorporated into cellular lipid as well. To some extent 9. sporogenes takes advantage of its reduced environment to meet these special demands. The various reductive carboxylation reactions utilized are novel and important Options for the supply and regulation of iso— leucine, leucine and valine in these bacteria. LITERATURE REVIEW The Clostridia The genus Clostridium encompasses a diverse group of anaerobic, spore-forming, rod-shaped bacteria (16, 21, 38). The Clostridia are widely distributed in nature, and their natural habitats include soil, fresh and salt water, and the intestinal tracts of animals. Although usually consider- ed gram positive, their reaction to this staining procedure is frequently variable. The bacteria are motile, relatively large rods which frequently are swollen when endospores form (hence, from the Greek Clostridium; small spindle) although filamentous forms are sometimes observed. Spores are located centrally, terminally or subterminally while deve10ping in the cell. A few species (including 9. pg;- fringens) have been observed to produce capsules. The bac- teria possess flav0protein enzymes which will readily re- duce molecular oxygen (02) to hydrogen peroxide (H202) and to superoxide (02-), but they lack catalase, peroxidase and superoxide dismutase activities which would protect them from these toxic products. Despite this inadequacy, differ- ent species show markedly different tolerances to oxygen; while most are strict anaerobes, C. perfringens can tolerate low 02 levels, and g. histolyticum grows slowly on blood 4 agar plates exposed to the air. Clostridial spores are notoriously resistant to heat, disinfectants, and lengthy exposure to air. Metabolically, the Clostridia can be di- vided into two general physiological groups; the predomi- nantly proteolytic or, the predominantly saccharolytic Clostridia. Proteolytic Clostridial fermentations usually result in the formation of volatile acids, ammonia, CO2 and H The ptomaines, putrescine and cadaverine, are produced 2. by decarboxylation of ornithine and lysine, respectively. The Clostridia are generally thought of as saprophytic soil organisms and commensal inhabitants of the intestinal tracts of animals. However, several species are important pathogens, and are responsible for three major diseases in humans; botulism lg. botulinum types A, B, and E), tetanus (Q. tetani), and gas gangrene (predominantly g. prefringens). None of these diseases are caused by the invasion of bac- teria into healthy tissues. Botulism is a classic intoxi- cation resulting from the ingestion of food containing pre— formed toxin. Tetanus and gas gangrene are usually the re- sult of local Clostridial growth in traumatized tissue, from which the soluble toxins are disseminated and a general toxemia results. Clostridium pasteurianum is a soil organ— ism capable of fixing molecular nitrogen (N2). Many other members of this genus manifest unusual and sometimes useful metabolic activities, and have been used in industrial fer- mentations for many years. The investigation of Clostri- dial intermediary metabolism has revealed several novel path- ways and activities, unique to these anaerobic bacteria. Clostridium sporogenes The most striking and significant feature of Clostri— dium sporogenes is its marked resemblence to Q. botulinum type A. The sole reliable distinguishing property between these species is the elaboration of botulinum toxin by g, botulinum type A. Both species produce very resistant, oval, subterminal spores. They are proteolytic, and pro- duce large amounts of butyric acid, and smaller amounts of acetic, isobutyric, isovaleric and isocaproic acids and propyl, isobutyl and isoamyl alcohols during fermentations. Q. sporogenes and Q. botulinum type A were found to ferment only fructose and glucose among 28 carbohydrates tested (38). The G + C content of both species is 26-28 moles %, and sev- eral strains show 100% DNA hom010gy in DNAzDNA hybridization experiments (28). A pyrolysis gas-liquid chromatography study of g. botulinum and related organisms readily dis- tinguished botulinum types A and B from types C and D, type E, and nonproteolytic types B and F (23), but failed to differentiate type A cultures from Q. sporogenes. Recent investigations of the endproducts of aromatic amino acid fermentations (20), and branched-chain amino acids (19) show that the two species ferment these compounds in the same fashion. In a study of the quantitative utilization of amino acids by representative strains of the Clostridia, g. sporogenes and Q. botulinum type A were shown to utilize the amino acids to a similar extent (29). 6 The neurotoxin elaborated. by Q. botulinum type A is the most potent biological toxin known; 1 ug is sufficient to kill the average human. Not surprisingly, most investi- gators pursue their studies in the metabolically indistin— guishable Q. sporogenes, and subsequently confirm results in g. botulinum type A. The precise nature of the relationship of Q. sporogenes to Q. botulinum is not clear. Ekland and Poysky (17) have demonstrated that when 9. botulinum types C and D were cured of their prOphages with mitomycin C, they concommitantly ceased to produce their dominant toxins. These cured, non- toxigenic strains of types C and D could then be converted to either toxigenic type C or D depending on the specific phage used. A similar interconversion of type C to g. ngyyi type A has been reported (18). Inducible bacteri- ophages have only recently been isolated from Q. botulinum type A (43), but the relationship between toxigenicity and lysogeny, or phage conversion to toxigenicity has yet to be demonstrated. It is quite possible that g. sporogenes is an atoxigenic strain of Q. botulinum types A by virtue of the loss of a temperate bacteriOphage. The intimate relationship of Q, sporogenes to Q, botulinum type A has led to considerable interest in the physiological characteristics of this species. Much of our current understanding of intermediary metabolism in anaerobes comes from studies with Clostridium sporogenes. The degra- dation of amino acids by anaerobic bacteria has recently been reviewed (4). These investigations have revealed several unique and unusual metabolic activities and path- ways, found only in the anaerobes. The important observation that many Clostridia, while unable to grow with a single amino acid as a fermentable energy source would readily grow if provided with appro- priate pairs of amino acids, was first made with Q. sporogenes by Stickland in 1934 (4). The coupled oxidation-reduction of amino acid pairs (the Stickland reaction) has since been observed in many Clostridia. g. sporogenes has an absolute requirement for selenium when using glycine as the oxidant in a Stickland reaction system (14). The bacteria oxidize the branched-chain amino acids valine, leucine, and isoleu- cine to isobutyrate, isovalerate and methylbutyrate in this fashion, although at least one strain converts leucine to isocaproate and isobutyrate utilizing a novel enzyme, leucine 2,3-aminomutase, which converts a-leucine to B-leucine (34). An investigation of ornithine metabolism in g. sporogenes has led to the elucidation of several novel enzymes, notably ornithine cyclase (deaminating) (31), ornithine 5,4—amino- mutase (40), 2,4-diaminopentanoic acid C4 dehydrogenase (39), and a reversible proline dehydrogenase which is regulated by glutamate (15, 30). The fermentation of the aromatic amino acids by g. sporogenes also proceeds in a novel fashion, and several unique enzyme activities have been identified including a 2-enoate reductase enzyme, which catalyzes the interconversion of E*-cinnamate to phenylpropionate in an NADH-dependent reaction (4, 11). *The latest nomenclature for cis-trans isomers. E=entogen = trans; Z = zusammen = cis (4). Investigations of amino acid metabolism in the clos- tridia have been hampered by the fact that these bacteria require a complex and ill-defined medium for good growth. Mead (29) was able to develop a reasonably well-defined medium for good growth. Mead (29) was able to develop a reasonably well-defined medium to study amino acid utiliza- tion, but a casein- hydrolysate was always included. Such a medium is not suitable for investigations of amino acid synthesis. Perkins and Tsuji (32) deve10ped a synthetic medium in which E. sporogenes could grow, although it could not sporulate well. The historical development of minimal media for the Clostridia has recently been reviewed (R.S. Hadioetomo, Ph.D. dissertation, Michigan State University, 1980); in this investigation, a minimal medium for Q. sporo- EEEEE was deve10ped which includes only eight amino acids, salts, and vitamins. Branched-chain Amino Acid Synthesis The reactions involved in the biosynthesis of valine, leucine, and isoleucine were first elucidated over a quarter of a century ago by Strassman, Weinhouse, and co-workers (41, 42). In subsequent years, these reactions have been ob- served in every biological system in which branched-chain amino acids are synthesized from smaller (3-4 carbon) pre- cursors (45). The most significant feature of these bio- synthetic reactions is that they have been shown to be catalyzed by a set of "shared" enzymes which operate both in 10 the synthesis of leucine and valine from pyruvate, and the synthesis of isoleucine from pyruvate and a-ketobutyrate (Fig. l). The continued extensive investigation of this sys- tem in Escherichia coli, Salmonella typhimurium, Neurospora crassa, Saccharomyces cerevisiae and other species has been aimed at elucidating the unusual and complex regulatory pheno- mena associated with this multi-product system. Table 1 illustrates these regulatory relationships in wild-type E. SQli' These dynamic interactions of several overlapping re- gulatory systems are viewed as a general model for the con- trol of pathways with shared precursors, intermediates and enzymes. Control of carbon flow over the isoleucine biosynthe- tic pathway is usually achieved at the first step in the pathway (Fig. 1). Threonine dehydratase catalyzes this con- version of L-threonine to a-ketobutyrate, ammonia and water. The enzyme and its regulation have been recently reviewed (R.S. Hadioetomo, 1980.Ph.D. dissertation, Michigan State University). Two distinctly different forms of the enzyme have been reported. A "biosynthetic" activity has been ob- served and purified from several sources (44, 45). Iso- leucine is a negative effector and valine a positive effector that antagonizes isoleucine inhibition of this activity. Synthesis of threonine dehydratase is subject to multiva- 1ent repression in the presence of excess isoleucine, valine, and leucine (25, 45) in E. coli and E. typhimurium. A "catabolic" threonine dehydratase, which is not allosteri— cally modified by branched-chain amino acids and is 11 .mcflom ocHEm camcolwmnocmum mo memonucmeHm .H .mHm $312.6 mpfisfitoxaom— new mmxo~a>zo$u< "Nu www.ma mafia $55913 “.5535-.. "J a a a? 4 ca: m1: M12 {Diva‘s 22> 38.3 Tl... 53 TW. :5 =Wb$ " :YND " ma . ma 0 . m. J . . . I 23302 88. .IA. 38.9 VI :59 Pasha m2 Pic ma ma 12 AIV mnH An. qu .Aus 9mg A+V q<> .Au. 2mg As. one An. n¢> (‘0 Au. q¢> Au. qu HHH HH Dmn oDMHoEH>m0Hm0mH mmmnucmm A¢> .qu .qu meow axoupmsouoofi qu ommumuomnoc msacomunuun mHOUOmM Mm mflogmm muouoommm anofiwum nonpoum mthncm nocmum .flHoo ownofluozomm ca coauoasmmn “Hosu can dehusm ucflomlnosmum .H wanna 13 stimulated by ADP, has been observed in anaerobically-grown E. coli and other species including Clostridium tetanomorphum (46) and E. sporogenes (R. S. Hadioetomo, 1980 Ph.D. disser- tation, Michigan State University). The first "shared" enzyme activity in isoleucine syn- thesis is a a-acetohydroxy acid synthase (AHAS), which cata- lyzes the condensation of two pyruvate molecules to form a-acetolactate or pyruvate and a-ketobutyrate to form a-aceto a-hydroxybutyrate. E. coli and E. typhimurium possess three isoenzymes to catalyze this reaction, but their properties, and roles in the regulation of carbon flow through the path- way, are not well understood. Considerable controversy has arisen surrounding the nature of several valine-resistant mutants of E. 99;; K-12. This strain has the genetic po- tential to express all three AHAS isoenzymes (45) [ilXE (AHAS I), 2125 (AHAS II), and llXHI (AHAS 111)], but is un- able to grow in minimal medium supplemented with valine. Since AHAS I and III are inhibited by valine, while AHAS II is not (Table 1), and mutants of E. 22;; K-12 without AHAS I and III require isoleucine, it has been proposed that the EEXC gene is cryptic in E. 22;; K-12 (22). Two markedly different explanations for the reversion of this strain to valine resistance have been prOposed. Lawther 22.2l- (27) have demonstrated that K-12 contains a frameshift mutation within ilXG and that valine resistant mutants have displaced this frameshift resulting, they say, in the expression of ilvG and valine resistance. However, Berg EE.El-r contend 14 that a truncated product of the ilXG gene is in fact made and that this protein may function in valine resistant mutants, perhaps as part of a slightly altered AHAS iso- enzyme complex (6). Carbon flow to leucine is regulated at the first en- zyme in this branch of the pathway, a—isopropylmatate syn- thase. The enzyme catalyzes the initial step in the chain- elongation mechanism, the reaction of a-keto-isovalerate and acetyl-CoA to form a-isopropylmalate. Subsequent steps lead to the l-carbon-longer homolog of a-keto-isovalerate, a-keto-isocaproate. This is transaminated to yield leucine. Usually this enzyme is quite specific for a-keto-isovalerate, but mutants have been obtained in Serratia marcescens in which other keto-acids are elongated (26). This leads to the production in these mutants of the abnormal amino acids norvaline, norleucine, homoisoleucine, homoleucine, and homovaline. A similar activity appears to be utilized in the spirochete Leptospira to produce a-ketobutyrate (via a citramalate intermediate) from the one-carbon-shorter homolog, pyruvate (13). It is not clear if this activity for isoleucine synthesis is "borrowed" from the leucine pathway or should be considered a "shared" enzyme, but the activity appears to be regulated by isoleucine suggesting the latter is the case. In this regard, this system is one of several ways to bypass the usual pathway of a a-ketobu- tyrate synthesis from threonine. A variety of alternate pathways to form a-ketobutyrate have been observed (Figure 2). In addition to the pathway 15 ASPARTATE HOMOSERINE e~: P“°5P“°' HOMOSERINE"““‘-* THREONINE V METHIONINE 11:; GPKETOBUTYRATE / GLUTAMATE —-—+ “‘METHYLASPARTATE PYRUVATE 4: CITRAMALATE ISOLEUCINE Figure 2. Known pathways to isoleucine via a-ketobutyrate 16 from threonine and the aforementioned elongation of pyruvate, a—ketobutyrate can reportedly be synthesized from phos- phoserine, methionine, and glutamate. In Bacillus subtilis, phosphohomoserine is dephosphorylated and deaminated directly to a-ketobutyrate, without the usual threonine intermediate (37). Methionine is converted to a-ketobutyrate by some or- ganisms (45). B-Methyl-aspartate (which can be synthesized from glutamic acid) is converted to isoleucine in E. 22;; W (33) and in Acetobacter suboxydans (5), probably via B-methyloxaloacetate and a-ketobutyrate. The reactions following the condensation of pyruvate and a-ketobutyrate outlined in Figure l have been observed in all organisms studied which produce isoleucine from a-ketobutyrate. An alternate pathway to the penultimate product of isoleucine synthesis, a-keto B-methylvalerate, is via the reductive carbozylation of a-methylbutyric acid. Isoleucine biosynthesis from a-methylbutyrate has been de— monstrated in anaerobic bacteria from the rumen (35), and in E. sporogenes (R.S. Hadioetomo, 1980 Ph.D. dissertation, Michigan State University). Many rumen bacteria require branched-chain volatile acids for growth (1) while for others they stimulate growth but are not requisite. There is no evidence to suggeSt that a-methylbutyrate is synthesized E3 novo in these bacteria. 17 Reductive Carboxylations The reductive carboxylation of organic acids is an important mechanism for CO2 assimilation in some anaerobic bacteria (8). While most microbes synthesize a-ketoglu- tarate utilizing the "forward" tricarboxylic acid cycle via isocitric dehydrogenase, some anaerobes produce this pre- cursor for glutamate through the reductive carboxylation of succinate. The physiological importance of the a-ketoglu- tarate synthase activities was first demonstrated in the green photosynthetic bacteria Chlorobium thiosulfatophilum and Rhodospirillum rubrum (7), and has been shown to be the predominant pathway in several Bacteriodes species (2). In the photosynthetic bacteria, a-ketoglutarate synthase and a—ketopropionate (pyruvate) synthase have been shown to play central roles in the reductive carboxylation cycle utilized by these bacteria as the principal mechanism to produce the precursors for amino acids and other cellular constituents (9). One complete turn of this cycle results in the incorporation of four melecules of CO2 and the net synthesis of one molecule of oxaloacetate. a-Keto acid synthases catalyze reactions which rarely occur in aerobic cells. Pyruvate synthase and a-ketoglu- tarate synthase each reverse reactions associated with the tricarboxylic acid cycle which are irreversible in aerobic cells; the decarboxylation of pyruvate to yield acetyl- CoA and C02, and the decarboxylation of a—ketoglutarate to yield succinyl-CoA and C02. These reversals are made 18 possible by the strongly electronegative potential of fer- redoxin found in many anaerobic bacteria which overcomes the energy barrier for carboxylation (8). The potential of re- duced ferredoxin is approximately equal to that of hydro- gen gas (Hz). a-Ketoglutarate synthase activity has been demonstrated in several genera of rumen bacteria including Veillonella, elenomonas, and Bacteriodes (2) although the exact nature of the low potential electron carrier is not known. In recent years it has become clear that the reduc- tive carboxylation reaction is not limited to acetate and succinate substitutes. The reactions below illustrate the presumed steps in the reductive carboxylation, although the exact mechanism is not well understood. 8 i) R - COOH + ATP-» R - C - Pi + ADP ii) R - CO - Pi + HSCoA-OR - CO - SCOA + Pi TPP 111) R - CO - SCoA + CO2 + Ferredox1nred -—a R - CO - COOH + HSCoA + Ferredoxinbx. The reductive carboxylation of a-methylbutyrate to yield a-keto-B-methylvalerate for isoleucine synthesis has been demonstrated in rumen bacteria (35) and E. sporogenes (R.S. Hadioetomo, 1980 Ph.D. dissertation, Michigan State University). Isobutyrate and isovalerate have been shown to be precursors of valine and leucine in some rumen bac- teria preparations (1, 10, 36). The synthesis of a-keto- butyrate via the reductive carboxylation of pr0pionate has 19 been observed in Chromatium, Clostridium pasteurianum, and Desulfovibrio (7), and in mixed rumen bacterial prepara- tions (10, 2). LITERATURE CITED Allison, M. J., and M. P. Bryant. 1963. Biosynthesis of branched-chain amino acids from branched-chain fatty acids by rumen bacteria. Arch. Biochem. Biophys. 101:269-277. Allison, M. J., and I. M. Robinson. 1970. Biosynthesis of a-ketoglutarate by the reductive carboxylation of succinate in Bacteriodes ruminicola. J. Bacteriol. 104:50-56. Allison, M. J., I. M. Robinson, and A. L. Baerz. 1979. Synthesis of a-ketoglutarate by reductive carboxylation of succinate in Veillonella, Selenomonas and Bacteroides species. J. Bacteriol. 140:980-986. Barker, H. A. 1981. Amino acid degradation by anaerobic bacteria. Ann. Res. Biochem. 50:23-40. Belly, R. T., S. Greenfield, and G. W. Claus. 1970. B-methylaspartate metabolism and isoleucine synthesis in Acetobacter suboxydans. Bacteriol. Proc. p. 141. Berg, C. M., K. Shaw, and A. Berg. 1980. The ilvG gene is expressed in Escherichia coli K-12. Gene 12:165-170. Buchanan, B. B. 1972. Ferredoxin-linked carboxylation reactions, p. 193-216. IE,P° Boyer (ed.), The Enzymes, V01. VI, 3rd ed., Academic Press Inc., New York. 20 10. 11. 12. 13. 14. 21 Buchanan, B. B., and D. I. Arnon. 1969. The reductive carboxylic acid cycle, p. 170-181. £2.J- M. Lowenstein (ed.), Methods in Enzymology, Vol. XIII. Academic Press Inc., New York. Buchanan, B. B., and M.C.W. Evans. 1965. The synthesis of a-ketoglutarate from succinate and carbon dioxide by a subcellular preparation of a phogosynthetic bacterium. Proc. Natl. Acad. Sci. U.S.A. 54:1212-1218. Buch, R. S., and F. D. Sauer. 1976. 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Bacteriol. 120:536-538. 23. 24. 25. 26. 27. 28. 29. 30. 23 Gutteridge, C. S., B. M. Mackey, and J. R. Norris. 1980. A pyrolysis gas-liquid chromatography study of Clostridium botulinum and related organisms. J. Appl. Bacteriol. 49:165-174. Iaccarino, M., J. Guardiola, M. DeFelice, and R. Fauro. 1978. Regulation of isoleucine and valine biosynthesis. 13 Current Topics in Cellular Regulation, Vol. 14, p. 29-73. Academic Press Inc., New York. Kisumi, M., M. Sugiura, and I. Chibata. 1976. Bio- synthesis of norvaline, norleucine, and homoisoleucine in Serraria marcescens. J. Biochem. 80:333-339. Lawther, R. P., D. H. Calhoun, C. W. Adams, C. A. Hauser, J. Gray, and G. W. Hatfield. 1981. Molecular basis of valine resistance in Escherichia coli K-12. Proc. Natl. Acad. Sci. U.S.A. 78:922-925. Lee, W. H., and H. Riemann. 1970. The genetic relatedness of proteolytic Clostridium botulinum strains. J. Gen. Microbiol. 64:85-90. Mead, G. C. 1971. The amino acid-fermenting Clostridia. J. Gen. Microbiol. 67:47-56. Monticello, D. J., and R. N. Costilow. 1981. Purification and partial characterization of proline dehydrogenase from Clostridium sporogenes. Can. J. Microbiol. 27:942-948. Muth, W. L., and R. N. Costilow. 1974. Ornithine cyclase (deaminating). III. Mechanism of the conversion of ornithine to proline. J. Biol. Chem. 254:7463-7467. 31. 32. 33. 34. 35. 36. 37. 24 Perkins, W. E., and K. Tsuji. 1962. Sporulation of Clostridium botulinum. II. Effect of arginine and its degradation products on sporulation in a synthetic medium. J. Bacteriol. 84:86-94. Phillips, A. T., J. I. Nuss, J. Mossic, and C. Foshay. 1972. Alternate pathway for isoleucine biosynthesis in Escherichia coli. J. Bacteriol. 109:714-719. Poston, M. J. 1976. Leucine 2,3-aminomutase, an enzyme of leucine catabolism. J. Biol. Chem. 251: 1859-1863. Robinson, I. M., and M. J. Allison. 1969. Isoleucine biosynthesis from 2—methylbutyric acid by anaerobic bacteria from the rumen. J. Bacteriol. 97:1220-1226. Sauer, F. D., J. D. Erfle, and S. Mahadevan. 1975. Amino acid biosynthesis in mixed rumen cultures. Biochem. J. 150:357-372. Schildkraut, I., and S. Greer. 1973. Threonine synthase- catalyzed conversion of phosphohomoserine to d-keto- butyrate in Bacillus subtilis. J. Bacteriol. 115:777- 785. Smith, L.D.S., and G. Hobbs. 1974. Genus III. Clostridium. lg R. E. Buchanan and N. E. Gibbons (eds.), Bergey's manual of determinative bacteriology, 8th ed., p. 551-572. Williams and Wilkins Company, Baltimore. 38. 39. 40. 41. 42. 43. 25 Strassman, M., A. J. Thomas, L. A. Locke, and S. Weinhouse. 1956. The biosynthesis of isoleucine. J. Am. Chem. Soc. 78:228-232. Strassman, M., A. J. Thomas, and S. Weinhouse. 1955. The biosynthesis of valine. J. Am. Chem. Soc. 77:1261- 1264. Takami, K., T. Kinouchi, and T. Kawata. 1980. Isolation of two inducible bacteriophages from Clostridium botulinum type A 1906. FEMS Letts. 9:23-27. Umbarger, H. E. 1973. Threonine deaminases. Adv. Enzymol. 37:349-395. Umbarger, H. E. 1978. Amino acid biosynthesis and its regulation. Ann. Rev. Biochem. 47:533-606. Whiteley, H. R., and M. Tahar. 1966. Threonine deaminase of Clostridium tetanomorphum. I. Purification and prOperties. J. Biol. Chem. 241:4881-8887. SECT ION I I Isoleucine synthesis from a-methylbutyrate or propionate by Clostridium sporogenes Daniel J. Monticello and Ralph N. Costilow Department of Microbiology and Public Health Michigan State University East Lansing, MI 48824 Running head: Isoleucine synthesis in E. §porogenes 26 ABSTRACT Preliminary studies showed that E. §porogenes (ATCC 7955, NCA PA 3679) made isoleucine in a novel pathway not involving threonine or threonine dehydratase. Radioactivity l4C]propionate and a-amino-[3-14C] from [3-14C]pyruvate, [ butyrate was incorporated into isoleucine, and increasing concentrations of a-methylbutyrate were found to reduce the incorporation of [14C1pyruvate. Crude extracts of the bacteria grown in a minimal medium were found to contain levels of a-acetohydroxyacid synthase activities comparable to those found in cells of E. 29;; K12 grown in minimal medium. Stepwise degradation of isoleucine labeled with specifically-labeled precursors supports the conclusion that E. §porogenes can make isoleucine via the reductive carboxy- lation of propionate to yield a-ketobutyrate which is metabolized to isoleucine in the classical fashion, or isoleucine can be made via the reductive carboxylation of a- methylbutyrate to a-keto-B-methylvalerate. 27 INTRODUCTION The pathway for branched-chain amino acid synthesis is well established in many aerobic organisms (32) and the regulation is known in some detail (15). Little consider- ation has been given to the synthesis of these molecules by strictly anaerobic bacteria, due mainly to the lack of a simple, defined medium for growth of these bacteria. The recent development in our lab of such a medium for Clostridium sporogenes (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University) revealed that this species requires valine or leucine for growth, but not isoleucine. Further investigation showed that these bacteria synthesize isoleucine in a novel fashion from pyruvate and CO and 2, that a-[14C1methylbutyrate is incorporated exclusively into isoleucine. Label from [14C]threonine was not incorporated into isoleucine, and the threonine dehydratase in these organisms was found to be catabolic in nature. We have therefore sought to determine the nature of isoleucine biosynthesis in E. §porogenes. Here we report that these bacteria incorporate [14C1propionate into iso- leucine, probably via the reductive carboxylation of propionate to a-ketobutyrate. Crude extracts possess significant levels of a-acetohydroxyacid activity, and presumably metabo- lize a-ketobutyrate to isoleucine via the classical pathway. Isotope competition experiments and degradation of iso- leucine isolated from cells labeled with specifically- labeled precursors indicate the E. sporogenes produces 28 29 isoleucine either from the reductive carboxylation of propionate to a-ketobutyrate, or from the reductive carboxy- lation of a-methylbutyrate to a-keto-B-methylvalerate, which is transaminated to form isoleucine. MATERIALS AND METHODS Culture and growth medium. Clostridium §porogenes (ATCC 7955, National Canners Association PA 3679) was used in all experiments. Procedures for maintaining the culture and for preparation of inocula were as previously described (12). The minimal medium used in these experiments is a modification of the synthetic medium of Perkins and Tsuji (23) containing salts, vitamins and eight amino acids (L- serine, 25 mM; L-arginine, 20 mM; L-phenylalanine, 10 mM; L- tyrosine, 2 mM; L-tryptophan, 2 mM; L-methionine, 10 mM; L- valine, 10 mM and L-leucine, 10 mM). The bacteria were grown in an anaerobic chamber (Coy Mfg., Ann Arbor, MI) at 37°C in an atmosphere of 5% carbon dioxide and 10% hydrogen in nitrogen. Labeling and fractionation of cells. [14C]-Labeled compounds were added to exponentially growing cells (10 m1 cultures, O.D. m0.3) which were grown for 4 h (1 generation) and then harvested by centrifugation. Typically, the cell pellet was extracted twice with 5 ml of 10% trichloroacetic acid (TCA) for 15 min, followed by 30 min of extraction in 10% TCA at 90°. Following this extraction, the pellet was washed once with hot 10% TCA, suspended in 1.5 ml 6 N HCl and hydrolysed at 110° for 24 h in an argon-flushed ampuole. The hydrolysate was evaporated to dryness, dissolved in distilled water and adsorbed onto a cation exchange resin (AG 50w-x4, hydrogen form; Biorad) packed in a pasteur pipette. The resin was washed with 15 m1 of distilled 30 31 water, and the amino acids eluted with 1 N ammonium hydroxide. The eluate was evaporated to dryness, resuspended in 100 pl of water and stored at -20°. Acetohydroxyacid synthase assay. Enzyme activity was assayed in crude extracts of E. gporogenes and E. 22;; K12 (source R. R. Brubaker). E. 22;; K12 was grown at 37° on a rotary shaker in the minimal medium (without citrate) of Davis and Mingoli (13). E. §porogenes was grown in the minimal medium. Crude extracts of these organisms were made from cells harvested from 500 ml of exponentially growing cultures. Pelleted, washed cells were suspended in 3 m1 of the buffer used for washing (50 mM potassium phosphate, 10% glycerol and 0.5 mM dithiothreitol, pH 7.5), and sonicated for 3 x 30 sec, with 1 min cooling intervals. Cellular debris was removed by centrifugation, and the extract used immediately. Acetolactate synthase activity in crude extracts was determined by the method of Stormer and Umbarger (29). Typical reaction mixtures contained 1 M potassium phosphate, pH 8.0, 0.1 m1; 1 mM thiamine pyrophosphate, 0.1 ml; 0.2 mg/ml flavin adenine dinucleotide (FAD), 0.1 ml; 0.1 M MgClZ, 0.1 ml; 0.2 M sodium pyruvate, 0.2 m1; crude extract and water to a final volume of 1 ml. The reaction was stopped after various intervals with 0.1 ml 50% H2804. The concen- tration of acetoin was determined with the addition of 1.0 ml 0.5% creatine hydrate and 1.0 ml 5% a-naphthol in 10% 32 NaOH. After 1 h at room temperature, absorbance at 540 nm was measured, and the concentration of acetoin determined from a standard curve. A similar reaction mixture was used for the deter- mination of acetohydroxybutyrate synthase activity, except 0.1 m1 of 0.2 M sodium pyruvate and 0.1 m1 of 0.2 M a- ketobutyrate acid were used and the reaction stopped with 0.1 ml of 10% (w/v) ZnSO and 0.1 ml of 1 N NaOH. Enzyme 4 activity was determined using the microbiological assay developed by Leavitt and Umbarger (17), which is based on the fact that the inhibition of the growth of E. 22$; K12 by L-valine is reversed by any six-carbon precursor of is oleucine. Growth of E. 22$; K12 in the minimal medium supplemented with 50 ug/ml L-valine and various dilutions of the reaction mix was compared with tubes with known concen- trations of isoleucine. The growth response of E. ggEE_K12 in this medium with added isoleucine is very similar to that with added acetohydroxybutyrate (18). Specific activity is expressed as umoles of acetolactate or acetohydroxybutyrate formed per g of protein per hour. Protein concentrations were determined by the method of Lowry gg|§l. (19). All enzyme reactions were performed at 37° in the anaerobic chamber. Separation of amino acids. Amino acids were separated by either thin layer or descending paper chromatography, and high-voltage paper electrophoresis. Whatman LK-S-D linear K preadsorbant plates (Whatman, Inc., Clifton, NJ) developed 33 with a methy1ethylketone-pyridine-water-glacial acetic acid (73:5:20:2) solvent system (20) were used to separate iso- leucine from all other amino acids. L-aspartate and L- glutamate were separated from other amino acids and each other by paper electrophoresis on Whatman No. 1 paper in 0.25 M sodium acetate buffer at pH 4.3. Ten p1 samples of protein hydrolysates were spotted on the paper and electro- phoresed at 17-35 volts/cm for 90 min. Isoleucine was readily obtained for degradation experiments utilizing descending paper chromatography with a butanol-acetic acid- water (120:30:50) solvent system. Hydrolysates were spotted in 5 pl amounts across sheets of Whatman No. 1 paper (46 x 57 cm). Following development, the isoleucine/leucine region of the chromatogram was identified and removed, and the amino acids eluted. The coelution of isoleucine and leucine in this solvent system was not a problem, since leucine was never significantly labeled. Amino acids were located by comparison with identical adjacent lanes sprayed with ninhydrin (0.1% in acetone). 14 Isoleucine degradation. The location of C incorporated into isoleucine from labeled precursors was determined with a stepwise degradation of isoleucine from protein hydrolysates. The procedure is essentially that of Strassman SE 3E. (30) with some modifications. Isoleucine was decarboxylated with ninhydrin and the a-methylbutyraldehyde formed distilled in 25% (v/v) H SO 3 2 4 oxidized to a-methylbutyrate (14). The a-methylbutyrate was into 20 ml of 5 M CrO and directly 34 recovered by steam distillation and degraded to gsg-butyl- amine via the Schmidt reaction (24). This was oxidized to methylethylketone and subsequently degraded to propionate and C02. The CO2 was trapped in l N NaOH and precipitated as BaCOB. The BaCO3 was washed with distilled water, suspended in 5 ml of water, and 5 ml conc. H2504 was added in a closed, evacuated 500 m1 jar with five vials containing 1 m1 of hydroxide of hyamine to trap the CO After 12 h, 2. 10 ml of toluene-based scintillation fluid was added to each of the vials, and the radioactivity determined in a scintil- lation counter. 14 Materials. C-Labeled compounds were obtained from New England Nuclear, Boston, MA. Hydroxide of hyamine was purchased from Packard Instrument Co., Inc., Downers Grove, IL. Aqueous scintillation cocktail was obtained from New England Nuclear and the toluene-based fluid prepared by mixing 6.0 g of 2,5-diphenyloxasole and 0.01 g 1,4-bis-2-(5- phenyloxazoyl)-benzene in 1 liter of toluene; both chemicals were obtained from Research Products International Corp., Elk Grove Village, IL. RESULTS 14 Effect of a-methylbutyrate on [U-14C]pyruvate and CO 2 incogporation into isoleucine. a-Methylbutyrate can be converted to isoleucine by E. §porogenes (R. S. Hadieotomo, Ph.D. dissertation, Michigan State University). Cells were grown in the minimal medium with 0, 5, 10 or 15 mM a- methylbutyrate, and the incorporation of label from exo- genous [U-14C1pyruvate into isoleucine and aspartate in the protein determined. [U-14C1Pyruvate (10 pCi) and a-methyl- butyrate were added to 10 ml cultures with Optical densities of about 0.3, which then were allowed to grow for 4 h. The protein was extracted from the cells, hydrolysed, and aspartate and isoleucine separated and the radioactivity determined. An identical experiment was performed with l4C-NaHCO3 (10 pCi/lO ml culture). Figure 1 shows that increasing concentrations of a-methylbutyrate lead to a significant decrease in the incorporation of label from [U- 14C]pyruvate into isoleucine relative to aspartate. No such change is seen with the 14CO2 label. 14 Incorporation of a-amino-[3- Clbutyrate into isoleucine. Although E. gpprogenes cells grown in the minimal medium do 1 not incorporate L-[ 4C]threonine into isoleucine, we wished to determine if alternate sources of a-ketobutyrate might be incorporated. A 10 ml culture was labeled for one generation l4C]butyrate (25 pCi). The radioactive with a-amino-[B- amino acids present in the protein hydrolysate migrated with the adjacent isoleucine control spot (Fig. 1). These data 35 36 DPH L-ISOLEUCINE DPH L-ASPARTATE 5° W I 0.2L- luC-PYRUVATE O\ Otlh 0\ ’ ‘0 o J J l 5 10 15 CONCENTRATION or Z-HETHYLBUTRYIC Acxo Fig. 1. Effect of a-methylbutyrate on the incorporation 14 of [U-14C]pyruvate and CO into isoleucine. E.‘spongenes 2 was grown for one generation in a minimal medium supplemented with 0, 5.0, 10 or 15 mM a-methylbutyrate and the 14C- labeled compounds indicated for one generation. Since the specific activity of aspartate did not change, the ratio of cpm in isoleucine to cpm in aspartate is shown on the abcissa. 37 800, GLUTAMATE VALINE sgcxne 700 ~ . O . O n \. //’ ASPARTATE PROLINE lSOLEUClN 600 .. 500 - :4 3-1l'C-ALPHA-AMIHOBUTYRATE é “00 " LABELED E; PROTEIN HYDROLYSATE g 300 ~ .5. {.3 200 _ U) \ SE 9’ 100 P _L l l 1 J l l J 1 l J l 1 i Ilia I] 1 2,4 5 81012141618202224262330323436. SECTION NUMBER Fig. 2. Incorporation of d-amino-[3-14C]butyrate into amino acids. 10 ul samples of the protein hydrolysate were applied to TLC plates. After development, 5 mm fractions were scraped from the lanes and counted. The location of amino acid standards chromatographed on an adjacent lane are shown at the tOp of the figure. 38 show that the C-3 carbon of a-aminobutyrate is incorporated 14c-iabei is in into isoleucine, since essentially all the this spot. a-Acetohydroxyacid synthase activity_in crude extracts. Since a-ketobutyrate appeared to be a precursor of isoleucine, we assayed crude extracts for the first enzyme in the classical pathway for branched-chain amino acid synthesis, a-acetohydroxyacid synthase (AHAS). The AHAS isoenzymes in ' E. EQli catalyze two reacions; the condensation of two pyruvate molecules to form a-acetolactate and CO2 (for valine and leucine synthesis) and the condensation of pyruvate and a-ketobutyrate to form a-aceto-a-hydroxybutyrate and C02. In crude extracts of E. sporogenes and E. 99;; K12 cells grown in minimal media, the specific activities of a- acetolactate synthase were 2.2 pmoles/min/g protein and 3.0 pmoles/min/g protein respectively. The a-aceto-a- hydroxybutyrate synthase specific activities were 2.4 pmoles/ min/g and 6.1 pmoles/min/g protein. These data show that when E. sporogenes is grown in the minimal medium, it possesses considerable AHAS activity but somewhat less than that found in minimal medium grown E. 99;; K12. Incorporation of 14C-propionate into isoleucine. Our finding that a-ketobutyrate was a precursor of isoleucine in E. gporogenes, although L-threonine and L-glutamate are not (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University), led us to look for other sources of a-keto- butyrate in the cell. The fact that E. sporogenes can 39 .800 _ GLUT/AMATE lSOLEUC INE 700 _ on I. O.\ O .. ASPARTATE PROLINE VAL{NE LEUCINE 600 _, 500 _ .u: S Q. ._. uoo - F‘ 2-1l‘C-PR0P10NATE g LABELED E 300 '- PROTEIN HYDROLYSATE .7: 8 m 200 _ ‘1. a: Q- U 100 .— 1 ’L 1 l _i _ #1 _L J J l J J u. 2 Q 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36 SECTION NUMBER Fig. 3. Incorporation of [2-14 C]propionate into amino acids. 10 ml samples of the protein hydrolysate were applied to TLC plates. After development, 5 mm fractions were scraped from the lanes and counted. The location of amino acid standards chromatographed on an adjacent lane are shown at the top of the figure. 40 reductively carboxylate d-methylbutyrate to form a-keto-B- methylvalerate suggested that these cells might also reductively carboxylate propionate to form a-ketobutyrate. A 10 ml culture was labeled for one generation with 50 pCi of [2-14 C]propionate, and the amino acids in the protein hydrolysate separated on TLC plates (Fig. 3). Most of the label in the protein hydrolysate migrated with the adjacent isoleucine control spot. These data show that propionate is also a precursor of isoleucine. When the supernatent fluid from [1-14C], [2-14C] and [3-14C]propionate labeled cultures were analyzed by paper 14C-label was found chromatography, a significant amount of in a-aminobutyrate (Table 1). The amino acids from the supernatent media were separated in n-butanol:acetic acid: water (120:30:50), methanol:water:pyridine (l60:40:8) and n- butanol:pyridine:water (60:60:60). In each case, the 14C- label amino acid had the same Rf as u-aminobutyrate. No other amino acid had a similar Rf in all three cases. Effect of propionate on [U-14C] serine incorporation into isoleucine. Previous data showed that E. sporogenes l4 incorporates a significant amount of C from [14C]-serine into isoleucine (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University). To examine the effect of exogenous propionate on [U-14C]serine incorporation into isoleucine, 10 m1 cultures and E. sporogenes in the basal l4 medium were supplemented with 10 pCi of [U- C]serine and 1.0, 2.0 or 3.0 mg of sodium propionate. The cultures were TABLE 1. Incorporation of butyrate 41 14 C-propionate into a-amino Rf in solventa Amino acid BuA BuP MeP Radioactive spot 0.45 0.38 0.60 L-a-aminobutyrate 0.44 0.38 0.61 L-proline 0.37 0.39 - L-methionine 0.50 0.50 0.60 L-aspartate 0.24 0.14 - L-tyrosine - 0.61 - L-tryptophan 0.50 0.62 - L-leucine 0.69 0.60 0.68 L-valine 0.51 0.47 0.64 L-serine - 0.31 - L-threonine - 0.31 0.57 L-alanine 0.34 0.35 - L-phenylalanine 0.59 0.62 0.61 aAmino acids were separated by descending paper chromato- graphy. Solvents: BuA; n-butanol:acetic acid:water (120:30:50), BuP; n-butanol:pyridine:water (60:60:60) and MeP; methanol:water:pyridine (l60:40:8). 42 TABLE 2. Effect of propionate on incorporation of [U-14C]- serine into isoleucine. Propionate cpm fraction of total in: (mg/ml.) Total ASP GLU ILE ASP GLU ‘ILE 0 6430 500 966 109 0.088 0.15 0.017 0.1 5490 555 778 28 0.10 0.14 0.005 0.2 3860 276 558 25 0.07 0.15 0.006 0.3 2590 208 432 16 0.08 0.17 0.006 a10 p1 of the protein hydrolysate was used. Aspartate and glutamate were separated by paper electr0phoresis, isoleucine by thin layer chromatography. 43 allowed to grow for three generations and were then harvested and the protein extracted. When the ratios of cpm in aspartate/total cpm in amino acids and cpm in glutamate/ total cpm in amino acids were examined (Table 2), increasing concentrations of propionate in the medium were found to have no effect on the percent fraction incorporated into these amino acids. In contrast, the cpm in isoleucine/total cpm in amino acids ratio was found to decrease significantly (by about 65%) with added pr0pionate (0.1 mg/ml). Incorpor- ation of [U-14C]serine into isoleucine was reduced to a very low level, but not zero. This isotope competition of [14C]serine incorporation by propionate indicates that these two substrates provide some common element in isoleucine biosynthesis. The fact that some minimal level of [14C]serine incorporation was attained suggests that serine may provide some element not produced from prOpionate. 14C] threonine into isoleucine. l Incorporation of L-[U- Although previous results indicated that L-[U- 4C]threonine is not incorporated into isoleucine by E. sporogenes grown in the minimal medium (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University), the fact that a- ketobutyrate is incorporated into isoleucine prompted us to reexamine this phenomenon. In the previous study, cells growing in the minimal medium were labeled with very high specific activity [14C]threonine and a very low total threonine concentration (25 pCi of label with a specific activity of 210 pc/pmole). In this experiment, the minimal 44 medium was supplemented with 10 mM L-threonine. After several generations of growth in this medium, 25 pCi of L- [U-14C]-threonine were added, and the cells grown for one generation. As in the previous study, most of the label in the protein hydrolysate was in threonine. However, while no significant label was recovered in isoleucine in the previous study (less than 150 dpm from a total of 124,000 dpm), there 14 was significant incorporation of C from L-[U-14C]threonine into isoleucine (over 270 cpm of 13,200 cpm incorporated) in this experiment. 1 Degradation of isoleucine labeled with [3- 4C]pyruvate, [1-14C]pr0pionate and [2-14C]propionate. Specifically labeled isoleucine from E. sporogenes was degraded in a stepwise fashion to locate the position of the label in the isoleucine molecule (Tables 3 and Fig. 4). The recoveries of various carbons by this procedure were low, therefore the results must be compared to appropriate controls. When the l4C]pyruvate, no significant isoleucine was labeled with [3- incorporation occurred in C-l or C-2. All of the label was incorporated into the last four carbons. Cleavage of Egg- butylamine results in the formation of propionate (C-3, - 14C-label was found in 4, -5) and iodoform (C-6) and the both fractions. In the classical pathway, the C-6 of isoleucine arises from pyruvate, and carbons 4 and 5 arise from a-ketobutyrate. The degradation results with [3- 14C]pyruvate labeled isoleucine show that if isoleucine is 45 TABLE 3. Degradationa of isoleucine from E. Sporogenes grown in the presence of [3-14C]pyruvate, [1-14C1- propionate and [2-14C]propionate U-14C-isoleucine 14C-growth substrate Degradation control [3-I4C]- [1-14C]- [2-14C] product degradation pyruvate propionate pr0pionate Isoleucine 55,000 5,600 1,300 2,200 C-l 4,900 (53)b 56 (1) None 140 (6) a-methyl 15,000 (32) 4,400 (79) 560 (43) 1,600 (73) butyrate C-2 170 (2) None 290 (22) 60 (3) Sec-butyl 3,600 (10 900 (16) None 230 (10) amine Propionate 750 (3) 390 (7) - 92 (4) Iodoform 140 (2) 140 (2.5) - - 3See Figure 4. Percent theoretical recovery. CPercent recovery. 46 .mHHouoo Hmucofifluomxo Mom moonuoz pom mamwuoumz mom .OQHU:OH0mfi mo soHumpmumop on» How ofiosom d .v .mwm smonoooa mee=mummw o m e m m e m m_=o + =eeo-~=o-m=o ...... ......N=z-=L-N=e-m=e m5 0 mhh3m4>zhm2|o mz—o:m40w~ N N . N a co N m e m ou sz m e m (k 58-5915 Tl. PISBSSRERS m=e N mzw o o 47 made via the classical condensation of pyruvate and a- ketobutyrate, pyruvate must also be incorporated into a- ketobutyrate prior to this step. All the label from [1-14C]propionate in isoleucine appears to be in C-2. No label is released during decarboxy- lation of isoleucine, but over 65% of the radioactivity in a-methylbutyrate was recovered as C02. These results are as expected if isoleucine is made from a-ketobutyrate, which is in turn formed by the reductive carboxylation of propionate. Although some label was released with the C-1 and C-2 carbons of [2-14C]propionate labeled isoleucine, most of the label remains in the Egg-butylamine and a significant amount was recovered in the propionate fraction. These results support the conclusion that a-ketobutyrate is made from propionate, and is subsequently incorporated into isoleucine in the classical manner. DISCUSSION These results offer a good explanation of the unusual 14C-labeling of isoleucine by E. sporogenes reported by Hadioetomo (1980, Ph.D. dissertation, Michigan State Univer- 14 sity). She observed that C-label from [14C]threonine was not incorporated into isoleucine, while radioactivity from 14 [14C]pyruvate, [14C]serine, CO or [14C]-a-methylbutyrate 2 was incorporated. She concluded that isoleucine was made in a novel fashion. The evidence presented here indicates that the synthesis of isoleucine in the minimal medium proceeds via the classical pathway (30) but that the a-ketobutyrate used is derived from a source(s) other than threonine. The results clearly show that a-ketobutyrate is a precursor of isoleucine. When E. sporogenes was grown with l 14 a-amino-[B- 4C]butyrate, the C-label was recovered pre- dominantly (almost exclusively) in isoleucine. It is probably converted to isoleucine via the classical pathway, since the first enzyme in the pathway, acetohydroxyacid synthase (AHAS) is present in crude extracts in levels comparable to those found in E. ggli. The data from the degradation of specifically-labeled isoleucine supports this conclusion, and indicates that propionate is an important source of a-ketobutyrate in E. sporogenes. If propionate were carboxylated to a-ketobutyrate, most of the radio- activity from [2-14C]propionate labeled isoleucine would be expected in the C-4 position. When isoleucine was labeled with this substrate, the bulk of the label was recovered in 48 49 the carbon 3-5 fragment of isoleucine. Similarly, 14C- label from [1-14C]propionate was found in C-2 of isoleucine, which is the ultimate location of the C-2 of a-ketobutyrate in the classical pathway. Finally, 14 14 C-label from [3- C]pyruvate was found in two locations in isoleucine, which suggests that pyruvate is not only condensed with a-keto- butyrate as in the classical pathway, but also that pyruvate is a precursor of a-ketobutyrate. There are probably other sources of a-ketobutyrate in the medium besides propionate, since both L-methionine and L-threonine can be converted to a-ketobutyrate by E. sporogenes growing in complex media (4). When 9. sporogenes was grown with 10 mM L-threonine in the minimal medium, a small amount of radioactivity from [14C]threonine was recovered in isoleucine. The unusual aspect of isoleucine synthesis in E. sporogenes is that the predominant source of a-ketobutyrate appears to be propionate, not threonine. An important source of propionate is L-serine, which is present in high concentration (25 mM) in the medium. The fact that increasing concentrations of propionate in the medium decreases the 4C]serine into isoleucine supports this 14 incorporation of [1 proposal, as does the observation that some C-label from [3-14C1PYruvate appears to be incorporated into isoleucine through a-ketobutyrate. Serine is readily converted to alanine by E. sporogenes growing in the minimal medium (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University): via pyruvate. In this fashion, serine and 50 alanine could be fermented to prOpionate via pyruvate. The fermentation probably proceeds by the acrylate pathway observed in E. propionicum or by the succinate-propionate pathway employed by other propionate producing bacteria (13). Hadioetomo showed that pyruvate in the cell was subject to extensive CO Label from 14C0 2 exchange at the C-1 position. 2 in the medium was incorporated into the C-1 of serine and alanine, and therefore would also be found in propionate. Since the C-1 of propionate eventually becomes the C-2 of isoleucine (Fig. 5) this may explain Hadioetomo's observation that 14 CO2 was incorporated into at least one carbon other than the C-1 of isoleucine. The reductive carboxylation of propionate to a-ketobutyrate which is proposed here has been observed in a number of other anaerobic bacteria, including E. pasteuranum (3,6). a-Methylbutyrate is an alternate precursor of isoleucine for E. sporogenes growing in the minimal medium. Hadioetomo showed that [14CJ-a-methylbutyrate was incorporated exclusively into isoleucine, and no radioactivity was released upon decarboxylation. We have shown here that increasing concen- trations of a-methylbutyrate in the medium decreased the incorporation of [14C]pyruvate but did not change the relative incorporation of radioactivity from 14 CO2 lnto isoleucine. If propionate is reductively carboxylated to a- ketobutyrate and processed to isoleucine in the classical fashion, or a-methylbutyrate carboxylated directly to a- keto-a-methylvalerate (the keto-acid analog of isoleucine), .mmcmmonomm EsaofluumoHo Ga mflmonuswm ocwosoaomfl How mmzaumm oomomoum .m .mHm mh4>zhm2| Q Eggs ”Etuamxm; Ohyfio ozfizro w5§Sbafiflmzuo ubSfichzu N12 me a N8 1 5395.915 «kl 58. ..-PNSLE Tl gage .me law-”Lie 1k: TSUNILS 5 m6 MS a N8 L .5 he 1895.915 T8915... L Me. 1.1. Egg. 8 m._.<>:m>m 52 the net incorporation of 14 CO2 would not change regardless of the prOportion of isoleucine made from a-methylbutyrate. The data presented here support the proposal that propionate and a-methylbutyrate are alternate sources of isoleucine. The carboxylation reactions which occur are presumably similar to the reductive carboxylation reactions which produce a-ketobutyrate from propionate (3,6), a-keto- glutarate from succinate (2,7) and a-ketoisocaproate from isovalerate and a-ketoisovalerate from isobutyrate (1,8) in other anaerobic bacteria. The incorporation of [14C1-a- methylbutyrate into isoleucine in this fashion has been demonstrated in the rumen species Bacteroides ruminicola (26). When E. sporogenes was grown in the minimal medium considerable a-ketobutyrate was produced, leading to the accumulation of a-amino-[14C]butyrate in the medium when the 1 cells were grown with [1- 4C]propionate, [2-14C]propionate or [3-14C]propionate. E. sporogenes also accumulates a- aminobutyrate when grown in a complex medium (21). In E. EEEE, a-ketobutyrate is usually produced from threonine, and the levels of a-ketobutyrate in the cell are strictly controlled by feedback regulation of threonine dehydratase by isoleucine and to a lesser extent valine and leucine (16). Threonine is not the primary source of a-ketobutyrate in E. sporogenes, nor is threonine dehydratase activity regulated by isoleucine (R. S. Hadioetomo, 1980, Ph.D. dissertation, Michigan State University). The accumulation 53 of a-aminobutyrate in the medium is of special significance since it has been shown to be an antimetabolite of valine in Bacillus anthracis (12) and E. coli K-12 (25). Gladstone (12) observed that the growth of E. anthracis in a minimal medium was inhibited by a-aminobutyrate in concentrations as low as 0.04 mM, and that the inhibition could be overcome by the addition of L-valine to the medium. The inhibitory effects of a-aminobutyrate may be responsible for the in- ability of E. sporogenes to grow in the minimal medium without valine and leucine. a-Aminobutyrate inhibition may be the result of reduced acetolactate production by the cell. In E. ggli_the condensation of two pyruvate molecules to form acetolactate (for valine and leucine) and the condensation of a-ketobutyrate to form a-aceto-a-hydro- xybutyrate (for isoleucine) are catalyzed by the same AHAS isoenzymes. Consequently, increased concentrations of a- ketobutyrate will competitively inhibit the formation of acetolactate. In experiments with purified AHAS I from E. Egli! Grimminger and Umbarger (14) showed that as the pyruvate/a-ketobutyrate ratio in their assay was changed from 10/1 to 1/1, the ratio of acetolactate/a-aceto-a- hydroxybutyrate formed changed from 5.3/1 to l/l.5. When a- aminobutyrate resistant mutants were selected from E. 99;; K-12 they were found to have derepressed levels of AHAS. Increasing enzyme concentration is one way to overcome competitive inhibition. Amino acid tRNA-syntheses play a role in the regulation of branched-chain amino acid synthesis 54 (16), and although a-aminobutyrate is activated by valyl- 1 and has tRNA synthase (5), it is not transferred to tRNAva no effect on the formation of the isoleucine-valine bio- synthetic enzymes in E. ggli_(1l,31). Regardless of the mechanism of inhibition, it seems likely that the same system which allows E. sporogenes to make isoleucine from propionate via a-ketobutyrate may also be indirectly responsible for the cell's inability to make valine and leucine, since the accumulation of a-aminobutyrate may preclude growth without exogenous valine and leucine. LITERATURE CITED Allison, M. J., and M. P. Bryant. 1963. Biosynthesis of branched-chain amino acids from branched-chain fatty acids by rumen bacteria. Arch. Biochem. Biophys. 101:269-277. Allison, M. J., and I. M. Robinson. 1970. Biosynthesis of a-ketoglutarate by the reductive carboxylation of succinate in Bacteriodes ruminicola. J. Bacteriol. 104:50-56. Allison, M. J., I. M. Robinson, and A. L. Baetz. 1979. Synthesis of a-ketoglutarate by reductive carboxy- lation of succinate in Veillonella, Selenomonas and Bacteroides species. J. Bacteriol. 140:980- 986. Barker, H. A. 1981. Amino acid degradation by anaerobic bacteria. Ann. Res. Biochem. 50:23-40. Belly, R. T., S. Greenfield, and G. W. Claus. 1970. B-Methylaspartate metabolism and isoleucine synthesis in Acetobacter suboxydans. Bacteriol. Proc. p. 141. Buchanan, B. B. 1969. Role of ferredoxin in the synthesis of a-ketobutyrate from propionyl coenzyme A and carbon dioxide by enzymes from photosynthetic and nonphotosynthetic bacteria. J. Biol. Chem. 244:4218-4223. 55 10. ll. 12. 13. 56 Buchanan, B. B. 1972. Ferredoxin-linked carboxylation reactions, p. 193-216. 12 P. Boyer (ed.), The enzymes, vol VI, 3rd ed. Academic Press Inc., NY. Buchanan, B. B., and D. I. Arnon. 1969. The reductive carboxylic acid cycle, p. 170-181. £2.3- M. Lowenstein (ed.), Methods in enzymology, vol XIII. Academic Press Inc., NY. Buchanan, B. B., and M.C.W. Evans. 1965. The synthesis of a-ketoglutarate from succinate and carbon dioxide by a subcellular preparation of a photo- synthetic bacterium. Proc. Natl. Acad. Sci. USA 54:1212-1218. Bush, R. S., and F. D. Saver. 1976. Enzymes of 2-oxo acid degradation and biosynthesis in cell-free extracts of mixed rumen microorganisms. Biochem. J. 157:325-331. Charon, N. W., R. C. Johnson, and D. Peterson. 1974. Amino acid biosynthesis in the spirochete Leptospira: evidence for a novel pathway of isoleucine synthesis. J. Bacteriol. 117:203-211. Costilow, R. N. 1977. Selenium requirement for growth of Clostridium sporogenes with glycine as the oxidant in Stickland reaction systems. J. Bacteriol. 131:366-368. Davis, B. D., and E. S. Mingioli. 1950. Mutants of Escherichia coli requiring methionine or vitamin B J. Bacteriol. 60:17-28. 12' 14. 15. 16. 17. 18. 19. 20. 57 Hoare, D. S., and J. Gibson. 1964. Photoassimilation and biosynthesis of amino acids by Chlorobium thiosulphatophilum. Biochem J. 91:546-559. Iaccarino, M., J. Guardiola, M. DeFelice, and R. Fauro. 1978. Regulation of isoleucine and valine bio- synthesis, p. 29-73. Eg Current topics in cellular regulation, vol 14. Academic Press, Inc., NY. Kisumi, M., M. Sugiura, and I. Chibata. 1976. Bio- synthesis of norvaline, norleucine, and homo- isoleucine in Serratia marcescens. J. Biochem. 80:333-339. Leavitt, R., and H. E. Umbarger. 1960. Colorimetric method for the estimation of growth in cap assays. J. Bacteriol. 80:18-20. Leavitt, R. I., and H. E. Umbarger. 1961. Isoleucine and valine metabolism in Escherichia coli. X. The enzymatic formation of acetohydroxybutyrate. J. Biol. Chem. 236:2486-2491. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the folin phenol reagent. J. Biol. Chem. 193:265- 275. McBride, R. W., D. W. Jolly, B. M. Kadis, and T. E. Nelson Jr. 1979. Rapid thin-layer chromatographic separation of isoleucine, leucine and phenylalanine. Chrom. 11:424-425. 21. 22. 23. 24. 25. 26. 27. 28. 58 Mead, G. C. 1971. The amino acid-fermenting Clostridia. J. Gen. Microbiol. 67:47-56. Moss, C. W., and J. L. Vester. 1967. Characterization of Clostridia by gas chromatography. I. Differ- entiation of species by cellular fatty acids. Appl. Microbiol. 15:390-397. Perkins, W. E., and K. Tsuji. 1962. Sporulation of Clostridium botulinum. II. Effect of arginine and its degradation products on Sporulation in a synthetic medium. J. Bacteriol. 84:86-94. Phares, E. F. 1951. Degradation of labeled propionic and acetic acids. Anal. Chem. 23:168-174. Phillips, A. T., J. I. Nuss, J. Mosic, and C. Foshay. 1972. Alternate pathway for isoleucine biosynthesis in Escherichia coli. J. Bacteriol. 109:714-719. Robinson, I. M., and M. J. Allison. 1969. Isoleucine biosynthesis from 2-methy1butyric acid by anaerobic bacteria from the rumen. J. Bacteriol. 97:1220- 1226. Sauer, F. D., J. D. Erfle, and S. Mahadevan. 1975. Amino acid biosynthesis in mixed rumen cultures. Biochem. J. 150:357-372. Schildkraut, I., and S. Green. 1973. Threonine synthase- catalyzed conversion of phosphohomoserine to a- ketobutyrate in Bacillus subtilis. J. Bacteriol. 115:777-785. 29. 30. 31. 32. 33. 59 St¢rmer, F. C., and H. E. Umbarger. 1964. The require- ment for flavine adenine dinucleotide in the formation of acetolactate by Salmonella typhimurium extracts. Biochem. BiOphys. Res. Comm. 17:587- 592. Strassman, M., A. J. Thomas, L. A. Locke, and S. Weinhouse. 1956. The biosynthesis of isoleucine. J. Amer. Chem. Soc. 78:228-232. Umbarger, H. E. 1973. Threonine deaminases. Adv. Enzymol. 37:349-395. Umbarger, H. E. 1978. Amino acid biosynthesis and its regulation. Ann. Rev. Biochem. 47:533-606. Whitely, H. R., and M. Tahara. 1966. Threonine deaminase of Clostridium tetanomorphum. I. Purifi- cation and properties. J. Biol. Chem. 241:4881- 4889. Interconversion of Valine and Leucine by Clostridium sporogenes Daniel J. Monticello and Ralph N. Costilow Department of Microbiology and Public Health Michigan State University East Lansing, Michigan 48824 Running head: Interconversion of Valine and Leucine 60 SECT ION I I I ABSTRACT Clostridium sporogenes has been found to require L- leucine and L-valine for growth in a minimal medium, although valine can be replaced by isobutyrate, and leucine by isovalerate. Cells grown in minimal media were found to 14 incorporate significant C-label from [14C]valine into leucine and 14 C-label from [14C]leucine into valine. These results indicate that these bacteria can interconvert leucine and valine. 61 62 It is well-established that many microbes can convert L-valine to L-leucine (14). This is accomplished by the elongation of a-ketoisovalerate (the keto-acid analog of valine) to a-ketoisocaproate (the keto-acid analog of leucine). This chain-elongation is similar in function to the elongation system in the tricarboxylic acid cycle which converts oxalo- acetate to a-ketoglutarate. Up to this point, there has been no evidence for the conversion of L-leucine to L- valine. E. sporogenes (ATCC 7955, National Canners Association PA 3679) was used in all experiments. It was maintained by refrigeration of a culture that had sporulated in a medium containing 4% trypticase, 2 mg of thiamine hydrochloride per liter, and 0.05% sodium thioglycolate. Vegetative cultures for inoculation of experimental media were initiated by inoculating tubes of this same medium (10 ml/tube) with 0.1 ml of the sporulated culture. These were heat-shocked (60°C for 10 min) and incubated at 37°C in an anaerobic chamber (Coy Manufacturing Company, Ann Arbor, MI). After growth for 6 to 8 h, tubes with 10 ml of the basal medium containing 10 mM valine and 10 mM leucine were inoculated with 0.1 m1 of this culture. When this second culture had growth to late exponential phase, 0.05 ml was used to inoculate experimental growth media. In the labeling experiments, cells were preadapted to the appropriate medium before addition of label. The basal medium used in these experiments was a modification of the synthetic medium of 63 Perkins and Tsuji (11). It contained salts, vitamins, 0.05% sodium thioglycolate and six amino acids - L-tyrosine (2 mM), L-tryptophan (2 mM), L-phenylalanine (10 mM), L-methionine (10 mM), L-arginine-HCl (20 mM) and L-serine (25 mM). For growth experiments optical densities at 600 nm were measured with a mini-spec 20 spectrophotometer (Bausch and Lomb Optical Co., Rochester, NY). E. §porggenes grew well in the basal medium supple- mented with 10 mM valine and 10 mM leucine; 10 mM valine and 10 mM a-methylbutyrate; 10 mM leucine and 10 mM a-methylbutyrate or 10 mM leucine and 10 mM isobutyrate (Table 1). These results encouraged us to attempt to grow the bacteria without either valine or leucine. Some growth occurred when 10 mM isobutyrate and 10 mM a-methylbutyrate, were added to the medium (Table 2). Slightly more growth was achieved by adding 10 mM isovalerate along with the other two volatile acids. These results suggested that the keto-acid analogues of leucine (a-ketoisocaproate) and valine (a-ketoisovalerate) can be produced by E. gporogenes from isovalerate and isobutyrate, respectively. Individual lots of cells were grown for one generation (m4 h) in the basal medium supplemented as follows: (a) 50 pCi L-[U-14C11eucine; 10 mM leucine, 10 mM isoleucine, and 10 mM a-methylbutyrate; (b) 50 pCi L-[U14C]valine, 10 mM valine and 10 mM a-methylbutyrate; and (c) 10 pCi [U- 14 14 C]pyruvate or 10 pCi CO in the medium with 10 mM valine 2 and 10 mM leucine. Cells were harvested, extracted, and 64 Table 1. Maximum growth in basal mediuma supplemented with amino acids and volatile fatty acids. Concentrations (mM) a-Methyl- Final L-Valine L-Leucine Isovalerate Isobutyrate butyrate O.D. 0 0 0 0 0 0.039 10 0 10 0 0 0.081 10 0 0 10 0 0.13 10 0 0 0 10 0.95 0 10 10 0 0 0.086 0 10 0 10 0 0.34 0 10 0 0 10 0.75 10 10 0 0 0 0.92 aThe basal medium is described in the text. Triplicate 10 m1 cultures were grown at 37° in the anaerobic chamber, and the optical density (O.D.) monitored at 2 h intervals. 65 Table 2. Maximum growth in basal medium supplemented with volatile fatty acids. ’Concentrations (mM) a-Methyl- Final Isobutyrate~ Isovalerate butyrate ‘ O.D. 0 0 0 0.039 10 0 0 0.066 10 10 0 0.066 10 10 10 0.40 0 10 0 0.056 0 10 10 0.056 0 0 10 0.080 10 0 10 0.30 66 protein hydrolysates prepared as described elsewhere (Monticello and Costilow, manuscript submitted). Aspartate, glutamate, valine, and leucine were separated from the protein hydrolysates and the specific radioactivity of each amino acid determined. Whatman LK-S-D linear K preadsorbant thin layer plates (Whatman, Inc., Clifton, NJ) developed with a methy1ethylketone-pyridine-water-glacial acetic acid (73:5:20:2) solvent system (9) were used to separate iso- leucine, leucine, and valine. L-Aspartate and L-glutamate were separated from other amino acids and each other by paper electrophoresis on Whatman No. 1 paper in 0.25 M sodium acetate buffer at pH 4.3. Samples (10 p1) were spotted on the paper and electrophoresed at 17-35 volts/cm for 90 min. Amino acids were located by comparison with identical adjacent lanes sprayed with ninhydrin (0.1% in acetone). The relative abundance of each of these amino acids in the protein from E. sporogenes grown in the basal medium is known (R. S. Hadioetomo, 1980 Ph.D. dissertation, Michigan State University), so the specific activity (cpm/nmole) of each amino acid could be estimated. Table 3 shows the results of these incorporation experiments. A significant amount of label was incorporated into valine when the cells were labeled with [14C1-1eucine, and into leucine when the cells were labeled with [14C]-valine. When amino acids are oxidized by E. sporogenes the carboxyl- group is released into the medium, and other amino acids may become labeled in this way. To determine the influence of 67 Table 3. Incorporation of 14C into aspartate, glutamate, leucine, and valine. cpm/10 pl Protein Hydrolysate Sp. Act. Ratios Growth Substrate Aspartate Glutamate Leucine Valine Leu/Asp Val/Asp [14c]- 30 a 50 3200 160 140 6.6 Leucine (0.67) (0.98) (94) (4.4) [14C]- 140 110 370 3400 3.7 30 Valine (3.0) (2.1) (11) (91) [3-14c1- 2700 4400 20 o 0.01 o Pyruvate (60) (86) (0.6) (0) 14CO2 3400 2800 580 440 0.23 0.16 (75) (54) (17) (12) aEstimated specific activities (cpm/nmole). 68 such reactions on the incorporation of label from [14C]- 14 1eucine into valine, cells were labeled with CO and the 2 amino acids examined. The ratio of radioactivity in valine/ 14 aspartate should remain roughly equal if the C-label in the valine is from exogenous 14C02, or 14CO [1 of valine/aspartate was 41 times larger with [l as compared to 14CO 14 2 released from 4C]-leucine. In fact, the ratio of the specific activities 4C]-leucine 2 as substrate (Table 3). This rules out CO2 as the principle source of radioactivity from [14C]- leucine which was found in valine. The same reasoning applies for the incorporation of [14C]-valine into leucine; in this case, the ratio of specific activities in leucine/ aspartate was 16 times that obtained when the cells were 14 labeled with CO As found in many other experiments 2. (Hadioetomo, 1980 Ph.D. dissertation, Michigan State Uni- 14C from [3-14C] pyruvate versity) no significant amount of was found in either leucine or valine. Branched-chain amino acid synthesis and its regulation in Escherichia coli, Salmonella gyphimurium, Neurospora crassa, Saccharomyces cerevisiae and several other organisms have been the objects of intense investigation (15). Little work has been done in this area with the anaerobes, however. The results presented here indicate that although E. sporogenes usually requires L-valine and L-leucine for growth in a minimal medium, the bacteria can interconvert leucine and valine. 69 The production of isobutyrate, acetate, and isocaproate from cultures grown with leucine has been observed in several strains of E. gporogenes [NCIB 10696 (10), EC-9 (12) and ATCC7956 (our unpublished results), and other Clostridia (4,10,12)]. The oxidation of leucine to isobutyrate by E. sporogenes has been shown to proceed via an unusual series of reactions; a-leucine is converted to B-leucine, which is oxidized to isobutyrate and acetate (12). It is likely that 14C-leucine is converted to l4C-isobutyrate in this fashion, and the l4C-isobutyrate is reductively carboxylated to a- l [ 4C]-ketoisovalerate, the keto-acid precursor of valine. The proposed pathway is shown in Fig. l. a-Keto-acid synthase catalyzed reductive carboxylations are relatively common among the anaerobes. The reductive carboxylation of a-methylbutyrate to a-keto B-methylvalerate has been demonstrated in E. gporogenes (R. S. Hadioetomo, 1980 Ph.D. dissertation, Michigan State University) and Bacteriodes ruminicola (13). The reductive carboxylation of isobutyrate for valine synthesis, and isovalerate for leucine synthesis has been observed in extracts prepared from mixed rumen bacteria (1) and photosynthetic bacteria (8). The formation of a-ketobutyrate from propionate has been demonstrated in cell-free preparations from Chromatium, Clostridium pasteurianum, Desulfovibrio desulfuricans (5), mixed rumen extracts (7) and Veillonella alcalescens (3), which along with other rumen bacteria (2) and photosynthetic bacteria (6) produces a-ketoglutarate from succinate. .ocflam> on ocflosoa mo coflmuo>coo may now hm3suom pomomoum .H .mam MII MII IINNII INNN-IN-IL-MIN .m. m5 0 wheem5<>oNIoemxua Ioouuwuzuumzu . MIN > I I N wh<._.mu< m._.- 6 .- 5 .— °\o/o ‘l I 3 K /.\O—O ILV " O /. A LV 2 - 55.44 LIB EXP—:0: L l L 0 15 30 ‘15 60 75 90 105 120 TINE (NIN) ‘1 )- VALINE —0 lSOBUTYRATE D ‘DVMB 3 .. 8 1 . /°7‘ 15/:/" I /A t)” L/ 75 105 1210 TINE (mu) 8 . l 7 .. 6 U——I:I VHB - LUEcINE —-0 lsowILEPATE / 5 .. \ ll .\ 04>Afifi/‘/ :5 38 0 15 30 45 60 75 90 105 120 TINE (NIN) Effect of a-Methylbutyrate on Total Growth It has been shown that E. sporogenes grows well in the basal medium with 10 mM valine and either 10 mM leucine or 10 mM a-methylbutyrate (R.S. Hadioentomo, 1980, Ph.D. dissertation, Michigan State University). To further exam- ine the role of a-methylbutyrate, cells were grown in the basal medium (section III) with 10 mM valine and increas- ing concentrations of either leucine, isoleucine or a-methyl- butyrate (Figure 2.). The cells grew significantly better with added a-methylbutyrate than they did with added isoleu- cine. When the a-methylbutyrate was analyzed by separation by gas chromatography, it was found to be contaminated with approximately 10% isovalerate (Figure 3). Two different lots of this product (Eastman Co.) were similarly contaminated. 81 FINAL OPTICAL DENSITY (600 NM) Figure 2. 82 1.2 1.0- 0* 'METHYLBUTYRATE A 87 _. :::::::;;;,’15:UCINE 0'8 0.6- / o 0.4 _ / / 1 o . .A 002b// ‘/‘——-—_‘/ 7 IA-’”" ‘,II. IsOLEUCINE I J I I; l 2.0 4.0 6.0 8.0 10 CONCENTRATION (NM) The effect of a-methylbutyrate on the final op- tical density (total growth) of cultures in 3 different media. All of the media include the basal medium and 10 mM L-valine, with a-methyl- butyrate, L-leucine or L-isoleucine. Figure 3. 83 3 AN . L_ _T ‘1' l Separation of a-methylbutyrate and isovalerate by gas chromatography. Shown above is the re- corder printout following the injection of a "10 mm a-methylbutyrate" sample. Peak 1 is the solvent front, peak 2 a-methylbutyrate, and peak 3 is isovalerate. Column and Conditions; Varian model 2400 equipped with flame ionization de- tector, 6ft x 2 mm glass column packed with car- bopak c coated with 0.3% carbowax and 0.1% H3PO4. Injector temp - 175°, Detector temp. - 175°, oven temp. - 135°, H2 carrier at 30 cc/min, sample size 1 pl. SECTION V SUMMARY The results presented illustrate the complexity of branched-chain amino acid metabolism in Clostridium sporo- genes. This investigation was initiated by the observa- tion that E. sporogenes required valine and leucine for growth in a minimal medium, but not isoleucine. There is considerable evidence (section II) that iso- leucine is made by the classical pathway (4) using propion- ate as a precursor of a-ketobutyrate, or that isoleucine can be produced directly from a-methylbutyrate. In an isotOpe competition experiment, exogenous a-methylbutyrate was shown to decrease the incorporation of [14 l4 C]pyruvate into isoleu- cine, while having no effect on CO2 incorporation. Since L-threonine is not a major source of isoleucine, cells were labeled with a-amino-[3-14C]butyrate to determine if a-ketobutyrate was produced from some other source. The 14C-label, and the demonstra- incorporation of considerable tion of AHAS activity (the first enzyme in the classical apthway) suggested that a-ketobutyrate was a precursor of isoleucine. Further labeling experiments showed that [2_14 C]propionate was also a precursor of isoleucine, and an isotope competition experiment demonstrated that exo- genous propionate reduced the incorporation of 84 85 [14 C]serine into isoleucine. These experiments prompted 14 the labeling of isoleucine with [l- C]propionate, [2-14C1- propionate and [3-14C]pyruvate and subsequent sequential de- 14C-label from [1-14 gradation. It was found that the C]- propionate was in the C-2 of isoleucine, [2-14C]propionate was in the carbon 3-5 fragment, and [3-14C]pyruvate in the carbon 3-5 fragment and C-6. These results support the con- clusion that propionate is reductively carboxylated to a-ketobutyrate in the cell, which is then converted to iso- leucine via the classical pathway, and that a-methylbutyrate is an alternate source of isoleucine. a-Amino-[14 C]butyrate was found to accumulate in the medium following labeling with [14C1propionate. Since a-aminobutyrate is a potent inhibitor of valine synthesis in E. anthracis (1) and E. coli (3), this may explain E. sporogenes' inability to grow in the minimal medium without exogenous valine and leucine. Further investigations of the reductive carboxylation capabilities of E. spgrogenes showed that these bacteria could make valine from isobutyrate and probably leucine from isovalerate. The results presented in section III indicate that E. §porogenes, like some other bacteria (4), is capable of the conversion of valine to leucine via the chain elongation pathway. This organism probably converts leucine to valine by first forming B-leucine using a leucine 2,3-aminomutase enzyme, which is then oxidized to acetate and isobutyrate (2). The isobutyrate can then be reduc- tively carboxylated to the keto-acid precursor of valine. 86 The branched-chain amino acid pools in E. sporogenes were shown to be subject to several unusual activities not observed in the enteric bacteria (4). Isoleucine, valine and leucine are subject to non-specific oxidation, presum- ably by the cellular machinery for ATP synthesis via the coupled oxidation/reduction of amino acid paris (the 14C-Labeled branched-chain amino acids Stickland reaction). were also incorporated into cellular lipid, especially va- line. Branched-chain fatty acids have been shown to re- present a considerable portion of the fatty acids in E. sporogenes lipid. It is clear that the substitution of a-methylbutyrate for leucine in the minimal medium is possible because of the considerable amounts of isovalerate in the a-methyl- butyrate preparation. Media which were believed to contain 10 mM a-methylbutyrate actually contained almost 1 mM iso- valerate. Reductive carboxylation of this fatty acid yields the keto-acid precursor of leucine. The results presented here illustrate the unique strategies and mechanisms employed by anaerobic bacteria to survive in their highly reduced environment. The reductive carboxylations observed here for the production of iso- leucine from propionate or a-methylbutyrate, valine from isobutyrate and leucine from isovalerate can only proceed under such reduced conditions. These reactions and their regulation represent a unique system for branched-chain amino acid synthesis and utilization in Clostridium Sporogenes. LITERATURE C ITED Gladstone, G. P. 1939. Inter-relationships between amino-acids in the nutrition of B. anthracis. Brit. J. Exp. Pathol. 20:189-200. Poston, M. J. 1976. Leucine 2,3-aminomutase, an en- zyme of leucine catabolism. J. Biol. Chem. 251:1859- 1863. Ramakrishnan, T. and E. A. Adelberg. 1965. Regulatory mechanisms in the biosynthesis of isoleucine and valine. II Identification of two operator genes. J. Bacteriol. 89:654-660. Umbarger, H. E. 1978. Amino acid biosynthesis and its regulation. Ann. Rav. Biochem. 47:533-606. 87