. . . .- . . . .. .p . . . 4 . o . u .. ..c v n u. o . o . o .c . to. u . u o u . . o c.- . o . o - . .. . . . . . . . . . . . o l u o u i ' LIBRARY 9 m Michigan §tate Universnty This is to certify that the thesis entitled THE EFFECT OF SATURATED AND UNSATURATED FATTY ACIDS ON HEPGZ CELLS AND THE TREHALOSE PROTECTION OF HEGZ CELLS ON PALMITATE INDUCED TOXICITY presented by YIFEI WU has been accepted towards fulfillment of the requirements for the MS. degree in CHEMICAL ENGINEERING AND MATERIAL SCIENCE fl / ‘ k (3 5% A CR Major Professor’s Signature j/N/ozf Date MSU is an affirmative-action, equal-opportunity employer ‘-_l_-l ._.—-—a--gg_p-u-n-u-- PLACE IN RETURN BOX to remove this checkout from your record. TO AVOID FINES return on or before date due. MAY BE RECALLED with earlier due date if requested. DATE DUE DATE DUE DATE DUE 5108 K IPro;/Acc&Pres/ClRC/DateDue Indd THE EFFECT OF SATURATED AND UNSATURATED FATTY ACIDS ON HEPGZ CELLS AND THE TREHALOSE PROTECTION OF HEPGZ CELLS ON PALMITATE INDUCED TOXICITY By Yifei Wu A THESIS Submitted to Michigan State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE Chemical Engineering and Material Science 2008 ABSTRACT THE EFFECT OF SATURATED AND UNSATURATED FATTY ACIDS ON HEPG2 CELLS AND THE TREHALOSE PROTECTION OF HEPGZ CELLS ON PALMITATE INDUCED TOXICITY By Yifei Wu Understanding the mechanism of saturated fatty acid-induced hepatocyte toxicity may provide insight into cures for diseases such as obesity-associated cirrhosis. Trehalose, a nonreducing disaccharide Shown to protect proteins and cellular membranes from inactivation or denaturation caused by different stress conditions, also protects hepatocytes from palmitate-induced toxicity. Our results suggest that trehalose serves as a free radical scavenger and alleviates damage from hydrogen peroxide secreted by the compromised cells. We also observe that trehalose protects HepGZ cells by interacting with the plasma membrane to counteract the changes in membrane fluidity induced by palmitate. Unsaturated fatty acids such as oleate and Iinoleate are not toxic to HepGZ cells and do not induce significant biophysical changes to cell membrane. The experimental results are supported by molecular dynamics simulations Of model cell membranes that closely reflect the experimental conditions. Acknowledgment My utmost gratitude goes to my advisor, Dr. Christina Chan, for her expertise, dedication, kindness, and most of all, for her patience. This thesis would not be possible without her guidance and support. I would also like to thank our collaborators Dr. Amadeu K. Sum and Sukit Leekumjom from Virginia Polytechnic Institute and State University for their dedicated work and substantial contribution in making the publication possible. My thanks and appreciation goes to Dr. Patrick Walton and all members of Cellular & Biomolecular Lab, for their important inputs and helpful comments in this project. I am grateful to Dr. Neil Wright in the Department of Mechanical Engineering and Dr. John L. McCracken in the Department of Chemistry, for gracefully providing the DSC and EPR measurements. iii TABLE OF CONTENTS List Of Figures .................................................................................. V Chapter 1 Saturated fatty acid toxicity on HepGZ cells and the trehalose protection of toxicity .......................................................................................... 1 Introduction ................................................................................ 1 Materials and methods ..................................................................... 4 Cell culture ............................................................................ 4 Cytotoxicity assay ..................................................................... 5 Membrane fluidity .................................................................... 5 Results ....................................................................................... 7 Discussion .................................................................................. 12 Chapter 2 Unsaturated fatty acid effect on HepG2 Cells ................................. 13 Introduction ................................................................................. 13 Materials and methods .................................................................... 16 Results ....................................................................................... I7 Discussion .................................................................................. 22 Chapter 3 Molecular dynamics Simulation ................................................. 24 Discussion .................................................................................. 30 Conclusion and future work .............................................................. 31 References ....................................................................................... 34 iv List Of Figures FIGURE 1 Effect of trehalose on the HepG2 cells cytotoxicity in response to palmitate ........................................................................................ 8 FIGURE 2 Effects Oftrehalose and palmitate on H202 release ....................... 9 FIGURE 3 Effect of palmitate exposure on cellular membrane fluidity ............ l I FIGURE 4 HepG2 cells cytotoxicity in response to FF As .............................. 18 FIGURE 5 Effects of FFAS on H202 release ............................................. 19 FIGURE 6 Effect of FFAS exposure on cellular membrane fluidity .................. 20 FIGURE 7 Effect of F FAS on phase transition temperature of DOPC Iiposome ...... 21 FIGURE 8 Starting structure of POPC/POPE bilayer with one palmitate inserted into the aqueous phase ............................................................................... 22 FIGURE 9 Snapshot of palmitate aggregation in the aqueous phase .................. 27 FIGURE 10 Snapshots of bilayer structures with and without palmitate ............. 28 FIGURE 1 1 Average number of hydrogen bonds per lipid for bilayers with FFAS... 29 Chapter 1 Saturated fatty acid toxicity on HepGZ cells and the trehalose protection of toxicity Introduction Non-esterified long-chain free fatty acids (FFAS) are major sources of cellular energy (1) and essential components in triglycerides, cholesteryl esters, prostaglandins, and phospholipid syntheses (2, 3). There have been numerous reports on the toxic effects of fatty acids on model cells in vitro. Andrade et al. showed that both saturated and unsaturated fatty acids exert toxic effects on melanoma cells through the loss of membrane integrity or DNA fragmentation (4). Lima et a1. evaluated the toxicity of various fatty acids on J urkat (T-lymphocytes) and Raji (B-lymphocytes) cells (5) and found a positive correlation between the toxicity and the chain length and number of double bonds in the fatty acids. Their experiments identified palmitate among the most toxic of the fatty acids. FFAS, especially saturated fatty acids, can cause cell death in many types Of cells, including pancreatic ,B-cell (6, 7), cardiomyocytes (8, 9), and hepatocytes (10-12). Most of the research up until now on the mechanism of cell death focused on the production of potential or toxic intermediates, such as stearoyl-COA desaturase 1 (13-15), acids from omega oxidation (16,17 ), reactive oxygen Species (ROS), ceramide (18,19), reduced mitochondrial potential (8), and reduction of mitochondrial Bcl-2/Bax ratio (11). Recent studies in our lab suggest that palmitate can cause Iipotoxicity in liver cells through increased production Of hydrogen peroxide (H202) and hydroxyl (*OH) radicals (12). Measurements indicated that the cytotoxicity was not completely prevented upon treatment with mitochondrial complex inhibitors or free radical scavengers. This suggests that mechanisms other than ROS production in the mitochondria may be contributing to the toxicity of palmitate. Therefore, we investigated the possibility that palmitate-induced toxicity may be due to hydrophobic effects on the cellular membrane. Fatty acids are known to have toxic and fusogenic effects on cells (20, 21). The mechanism by which fatty acids exert cytotoxicity has been identified as the detergent-effect (22). According to this hypothesis, ionized fatty acid micelles solubilize membrane lipids or proteins and disrupt the physical and functional integrity of cell membranes (20, 21). Identifying chemical agents to prevent or reverse the effect Of fatty acid induced cellular toxicity has been a major focus of research in the past decades. Studies have suggested that saturated and unsaturated fatty acids have different effects on toxicity. For example, there has been evidence indicating that dietary oleic acid can protect endothelial cells against hydrogen peroxide-induced oxidative stress and reduce the susceptibility of LDLs to oxidative modifications (23-25). Similarly, we found that oleic acid does not induce the same level of cytotoxicity as palmitic acid in HepG2 cells at similar concentrations (12) and the addition of oleic acid reduces the cytotoxicity induced by palmitate (26). In another related study, Kinter et al. investigated the protective role of unsaturated FFA in oxygen-induced toxicity of hamster fibroblasts and found that monounsaturated F FA increased cell survival as compared to saturated and polyunsaturated F PAS (27). Furthermore, it has been shown that unsaturated FFAS rescued palmitate-induced apoptosis by converting palmitate into triglycerides (13). Recently, Natali et a1. investigated the effects Of various types of FFAS in glial cells and found that oleic acid was apotent inhibitor of fatty acid and cholesterol synthesis (28). In recent years, it has been established experimentally that trehalose has a stabilizing effect on biological membranes (29) by protecting cells from dehydration, heat, and cold (30-32). Moreover, evidence is mounting suggesting that trehalose acts as an antioxidant, possibly serves as a free radical scavenger (33-35), and inhibits the peroxidation of unsaturated fatty acids by heat or oxygen radicals (35,36). In addition, trehalose has been found to protect yeast cells and cellular proteins from damage by oxygen radicals during oxidative stress (37). In light of the role trehalose plays in the stabilization of cells, we investigated whether trehalose is protective in the presence of palmitate, and if so, we aimed at understanding how trehalose protects against palmitate-induced toxicity. Therefore, to gain insight into how trehalose interacts with liver cells (human hepatocellular carcinoma cell line, HepG2 cells) in the presence of palmitate, we performed a series of experimental and computational measurements. The experimental measurements focused on determining the influence of palmitate and trehalose on the fate of HepG2 cells, and the computational part aimed at interpreting and understanding the experimental results, shedding light into the role of palmitate and trehalose in the toxicity of HepG2 cells. Insight into these mechanisms will add to our understanding Of processes (i.e., metabolic, signaling, and biophysical) that are altered by palmitate. We found that palmitate decreased the cellular membrane fluidity of HepG2 cells. The addition of trehalose to palmitate cultures prevented this lowering in membrane fluidity. Thus, we found that trehalose protects also against palmitate-induced toxicity in liver cells. This study represents the first attempt to obtain a comprehensive understanding of the biochemical and biophysical processes leading to and resulting from the toxicity of palmitate on cells. Materials and methods Cell culture Human hepatocellular carcinoma cell line, HepGZ (American Type Culture Collection, Manassas, VA), was cultured in Dulbecco's modified Eagle's medium (DMEM, lnvitrogen, Carlsbad, CA) containing 10% fetal bovine serum (American Type Culture Collection) and 2% penicillin-streptomycin (Invitrogen). They were seeded in six-well plates and incubated at 37°C in humidified atmosphere containing 10% C02. After cells reached confluence, the media were replaced with 2 ml control medium (4% fatty-acid free bovine serum albumin, or BSA) or fatty acid (0.7 mM with 4% BSA) and changed every 24 h. The BSA level used was close to physiological conditions (38). A quantity of 0.7 mM F FAS was employed in this study because the plasma FFA levels in the obese and type 2 diabetic patients have been reported to be approximately this level (39-42). Experiments were conducted after 48 h of treatment. To determine the Optimal amount of trehalose to add, we performed a dose-response in HepGZ cells with trehalose ranging from O to 0.2 mM. Cytotoxicity assay Cell viability was assessed by lactate dehydrogenase (LDH) leakage through the membrane into the medium. The cell culture supernatant from control and palmitate-treated cultures were tested after 48 h of incubation for the presence of LDH [LDH(medium)] usingan LDH assay kit (Roche Applied Science, Indianapolis, IN). Cells were washed with phosphate-buffered saline (PBS) and lysed with 1% triton-X 100 for 12 h at 37°C. The cell Iysate was then centrifuged at 5000 g for 10 min and tested for LDH activity [LDH(trtoin)]. The LDH released was normalized to the total LDH, given by LDH (medium) %LDH = x LDH (medium) + LDH(trit0n) Membrane fluidity Two different stearic-acid derivatives were used to detect changes in the membrane fluidity, S-n-doxylstearic acid (S-n-SASL) and l6-n-doxylstearic acid (I6-n-SASL) (lnvitrogen, Carlsbad, CA). The S-n-SASL probe monitors the portion of the membrane closest to the lipid headgroups, while the 16-n-SASL reflects changes in the middle/end of the lipid hydrocarbon chains (43). A stock solution of the spin labeled stearic acids at 10’3 M was prepared in dimethyl-sulfoxide and the aliquots stored at —20°C. Immediately before use, the stock solution was thawed and diluted 50 times with PBS. Preliminary experiments were conducted to confirm that the spin-label solution did not affect the cell viability. Cell suspensions collected after Trypsin-EDTA (GIBCO, Billings, MT) exposure were centrifuged and the pellets were resuspended in spin label solution and kept on ice. The labeled cell suspensions were then transferred to a flat cell and placed in the cavity of the electron paramagnetic resonance (EPR) spectrometer (model NO. ESP-300E X-band; Bruker AXS, Madison, WI). The microwave power was set at 15.8 mW, the modulation frequency at 100 kHz, and the modulation amplitude at 2.53 G. For indexes of membrane fluidity, we evaluated the values of the outer and inner hyperfine splitting (2 T .L and 2T” in Gauss, respectively) in the EPR spectra for 5-n-SASL. The order parameter was calculated from 2T .L and 27‘" by §_ TH—(Ti +C) __ X 1.66 'l‘ll + (2'1" + C) where C = 1.4 — 0.053(T” — T .L)- In the EPR spectra for l6-n-SASL, we used the peak height ratio (ho/h — I) for an index of the membrane fluidity (44,45), where ho and h — 1 are the heights of the central and high-field peaks, respectively. The greater the values of the order parameter and peak height ratio, the lower the freedom of motion of the spin labels in the membrane bilayers, indicating lower membrane fluidity (46). Results Palmitate cytotoxicity and trehalose protective role We previously found that palmitate-induced toxicity led to ROS production in HepG2 cells (12), but its effect was not prevented upon treating with ROS scavengers. During oxidative stress, yeast cells produce trehalose to protect themselves from damage by oxygen radicals (37). Therefore, we evaluated the effect of trehalose on palmitate-induced toxicity in HepG2 cells. The level of cytotoxicity was measured by the relative amount ofLDI-I released in the medium. The control consisted of HepG2 cells exposed to DMEM with 4% BSA. From Fig 1, our measurements indicate that palmitate significantly increased the amount of LDH released, relative to the control. As the concentration of trehalose increased, the LDH released reduced significantly. This protective effect reached a maximum at a trehalose concentration of 0.13 mM, whereupon further increase in the trehalose concentration was detrimental to the l-IepGZ cells. Although the mechanism of trehalose-induced toxicity is not a focus Of this study, we infer from previous studies, including our own, that trehalose preferentially binds to the membrane and possibly causes surface modifications that may affect cell activity (47-52). As it will be demonstrated fiom our computational studies, we found that trehalose can induce local hydrophobic/hydrophilic domains along the bilayer interface, a membrane reorganization process which may have potentially detrimental effects. Based on these findings, atrehalose concentration of 0.13 mM was optimum for alleviating the palmitate-induced toxicity in HepGZ cells and it was used in all subsequent experiments. 75( ‘ - --—-— — - » —- - — —.__- -__._______ __ _- 41.1 # % LDH 0.00 0.10 0.13 0.16 0.20 Trehalose concentrations (le0 FIGURE 1 Effect of trehalose on the HepGZ cells cytotoxicity in response to palmitate. Confluent HepG2 cells in bovine serum albumin (BSA) medium were exposed to 0.7 mM palmitate in the presence of different concentrations of trehalose. The LDH released was measured after 48 h. Open and shaded bars represented the effect of trehalose alone or the mixtures of trehalose/palmitate, respectively. Note that the first shaded bar shows the effect of palmitate alone. Error bars are standard deviation of three independent experiments. The symbols * and # indicate statistical difference from control and palmitate, respectively (p < 0.05). Trehalose on H202 release We previously identified H202 as one of the ROS species involved in the palmitate-induced toxicity of hepatoma cells. To determine whether trehalose protected HepG2 cells by scavenging H202, the measured H202 released into the medium was normalized to total cellular protein. As shown in Fig 2, 48 h of palmitate exposure enhanced H202 release into the medium, while trehalose Significantly reduced the H202 release in the presence of palmitate. The results suggest that trehalose protects the cells in part by reducing H202 release. * ,# 24.8 10 0.77 0.52 o——-+ L BSA BSA+Treh BSA+ Palm BSA+Treh+Pa|m H202 Released (nmol/mg protein) FIGURE 2 Effects of trehalose and palmitate on H202 release. Confluent HepGZ cells in BSA medium were treated with 0.7 mM palmitate (Palm) with or without 0.13 mM trehalose (Treh) for 48 h. The H202 released into the medium was measured and normalized to total cellular protein. Error bars are standard deviation of three independent experiments. The symbols * and # indicate statistical difference from control and palmitate, respectively (p < 0.05). Membrane fluidity for HepG2 cells Since palmitate is hydrophobic, there may be nonspecific cytotoxic effects due to its hydrophobicity. It has been established experimentally that trehalose has a stabilizing effect on biological membranes (53), therefore we investigated the changes in cellular membrane structure upon exposure to palmitate in the presence and absence of trehalose. The cellular membrane fluidity of HepG2 cells in the presence of palmitate or trehalose was measured by EPR. The EPR spectra of the spin-label agents were used to detect changes in the freedom of motion of the lipids in the cell membrane, thus providing a measure of the membrane fluidity. The membrane fluidity of HepG2 cells were measured after 48 h of exposure to palmitate, trehalose, and combinations thereof. The control was HepG2 cells exposed to DMEM with 4% BSA. Using l6-n-SASL as a probe to monitor the ordering of the lipid tails near the center of the bilayer core, we observed a greater peak height ratio for the palmitate-treated cells as compared to the control, which correlated with reduced freedom of motion of the spin labels in the membrane. This indicates a decrease in membrane fluidity of the cells treated with palmitate for 48 h, as shown in Fig. 3a. The exposure of HepG2 cells to trehalose had an insignificant effect on the bilayer core region since trehalose is excluded from the bilayer. The interaction of trehalose with the membrane is only at the surface of the bilayer. Treating HepG2 cells with trehalose and palmitate increased the peak height ratio. This suggests that a complex interaction exists between the cellular membrane, palmitate, and trehalose. Similarly, using 5-n-SASL as a probe to monitor the lipid carbons nearthe lipid headgroups, we Observed that the presence of trehalose in the palmitate-treated cells increased the fluidity near the surface of the membrane (see Fig. 3b). 10 a) 4.5 ~ * 4.29 *3; ,1." 4.11 E42- 6 5 ,_ .2 379 3.84 E 3.9 — ° .c a .9 .. l (D , r. .c 1' .é . a) 3.6 ~ i l E 0. li '. 3'3 ” '- I - ; f I BSA BSA+Treh BSA+Palm BSA+Treh+Palmy b) 0.72 — * 0.702 _ 0.70 e 0 E e 8 0.68 5 E O (I) 0.66 0.64 BSA BSA+Treh BSA+PaIm BSA+Treh+Palm FIGURE 3 Effect of palmitate exposure on cellular membrane fluidity. Cells were treated with 0.7 mM palmitate in the presence or absence of 0.13 mM trehalose for 48 h. The cellular membrane fluidity was measured using EPR. (a) Values are peak height ratio for 16-n-SASL-labeled HepGZ cells. (b) Values are order parameter for 5-n-SASL-labeled HepGZ cells. Error bars are standard deviation of four independent experiments. The symbols * and # indicate statistical difference from control and palmitate, respectively (p < 0.05). 11 Discussion: FFAS are known to play important roles in the development of many hepatic disorders. A number of studies have shown that elevated levels of fatty acids are important mediators of Iipotoxicity and can impair cellular functions and/or cause cell death (54). Others have found that the negative effect of FFA-induced toxicity may be reduced or alleviated by the addition of unsaturated fatty acids, antioxidants, or, as of more recently, disaccharides. To evaluate whether palmitate-induced toxicity can be reduced by adding trehalose, we exposed HepGZ cells to palmitate alone or a combination of trehalose and palmitate. As demonstrated from our experiment (Fig 1 and 2), cells exposed to palmitate resulted in a significant amount of LDH and H202 released into the medium, indicating cell death or compromised cellular membrane. With increasing trehalose concentration, reduced amount of LDH released is observed in the presence of palmitate, up to ~13 mM, an optimal concentration for HepGZ cells. Furthermore, a significant reduction in H202 released is observed for these cells. To provide insight into the biochemical and biophysical processes altered by the presence of palmitate in HepG2 cells and to interpret these results from a molecular level, we collaborated with Dr. Amadeu K. Sum and Sukit Leekumjom from Virginia Polytechnic Institute and State University, and they studied the effect of palmitate and trehalose on model cell membranes (lipid bilayers) using molecular dynamic simulations. The simulations results reveal the early stages of how palmitate induces biophysical changes to the cellular membrane and the role of trehalose in protecting the membrane structure. (Chapter 3) 12 Chapter 2 Unsaturated Fatty Acid Effect on HepG2 cells Introduction Unbound free fatty acids (FFAS), derived from dietary triglycerides (TGs) and phospholipids, are aliphatic monocarboxylic acids and among important energy sources for cells and tissues (55, 56). Typically containing a lipid chain of 4 to 28 carbons, they are classified according to the degree of unsaturation: saturated, monounsaturated, and polyunsaturated (57-60). The optimal FF A concentrations in the plasma stream are regulated by plasma protein albumin that leave about less than 0.01% unbounded (61, 62). Recently, in vitro studies confirm that saturated FFAS induced significant toxic effects on various cells types, however, unsaturated F FAs have been shown to induce less toxic effects or reduce and prevent the toxic effects by saturated FFAS (63-66). It was suggested that saturated F F As-induced toxicity may be due to hydrophobic effects on the cellular membrane rather than ROS, mainly because the cytotoxicity was not completely prevented upon treatment with mitochondrial complex inhibitors or free radical scavengers (66). Currently, there is very limited knowledge on how unsaturated F FAS play a role in preventing or reducing the toxicity. There have been numerous studies that examined the effects of unsaturated FAS on lipid bilayers or liposomes at various conditions. For example, Sunamoto et a1. investigated the autoxidation of phosphatidylcholine (PC) Iiposome containing 13 arachidonic and linoleic acids (67). Using 1,1- diphenyl-Z-picrylhydrazyl as radical, they found that the oxidation rate of unsaturated FAS or lipids became faster in liposomes compared to the reaction in solution. Their results suggested that the reactions are preferential within the bilayer core regions. In another related studies, Lee et al. exposed liposomes containing different amounts of oleic, linoleic, and arachidonic acid to oxidizing medium and found that liposomes containing linoleic and arachidonic acid were less susceptible to oxidation than oleic acid (68). After exposing the fragments of lipid peroxidation to endothelial cells and found that the amount of monocyte chemotaxis and monocyte adhesion were significantly increased, they concluded that oxidation products of linoleic and arachidonic acid can triggered cellular immune response. Furthermore, Samuni et al. investigated the oxidative damage of egg phosphatidylcholine (EPC) Iiposome containing arachidonic acid (C20z4), cis- 7,10,13,16,19-docosapentaenoic acid (C225), and ciS-4,7,10,13,16,19-docosahexaenoic acid (C22z6) in the presences Of vitamin E, antioxidant (Tempo), and cholesterol (69). Their results showed that all polyunsaturated FFAS are highly sensitive to oxidation and hydrolytic degradation. Based on the residual fragment of FFAS collected overtime, cholesterol demonstrated some protective effect and Tempo were better antioxidant than vitamin E. Furthermore, Hyv"onen et al. investigated the membrane properties at the final stage of the phospholipases A2 enzyme process where phospholipids within the bilayer are hydrolyzed to fatty acids (70). Using PLPC, lyso-PC molecules (a PC headgroup, glycerol backbone, and palmitic acid chain), and Iinoleate/linoleic acid in their 14 models, they found that the bilayers become unstable, as a result of water penetrating into the bilayer core region. Recently, Watabe et a1. examined the decomposition rate of unsaturated FAS in DPPC Iiposome containing photoporphyrin IX (PpIX) from light irradiations and determined the oxidation rate from fast to slow: arachidonic acid < oleic acid < linoleic acid (71). Although the oleic acid contains less number of double-bond than linoleic derivatives, they have a greater oxidation rate because the locations of double-bonds are in close range of PpIX molecules embedded within the bilayer. In summary, experimental studies mentioned here are based on the resulting products of lipid oxidation, however, none have addressed the interactions between lipid constituent and FA at the initial stage of this process. In Chapl, We found that trehalose, a non-reducing disaccharide widely used as a stabilizer and preservant, has a protective role in palmitate-induced toxicity. Unlike trehalose, which is impermeable to membranes (72), unsaturated FFAS can be transported through the membrane into cells through passive and active transport. Once inside the cells, FA can modify the membrane lipid compositions by altering the membrane fluidity and in turn affect cellular function (73,74). Based on this fact that saturated F A decreased membrane fluidity in Chapl, we speculated that the presence of unsaturated FA may help maintain or restore membrane fluidity to its normal state. TO compare the effect of saturated and unsaturated FAS on cell membranes, we conducted the cytotoxicity experiments using HepGZ cells exposure to palmitate, oleate, and Iinoleate. Computational investigations through MD simulations were used to confirm the experimental results and determine the role of palmitate, oleate, and 15 Iinoleate on model DOPE bilayers. To relate experimental and computational results, the phase transition study of DOPC Iiposome containing various concentrations Of saturated and unsaturated FAS was used. We try to interpret and understand the interactions of F As embedded inside the lipid bilayers and identify the role of unsaturated FAS in preventing the changes in membrane fluidity. Insight into these mechanism will add to our understanding of processes (i.e., metabolic, signaling, and biophysical) that are induced by FFAS. Experimental Materials and Methods Cell culture Human hepatocellular carcinoma cell line HepGZ was cultured in DMEM containing 10% fetal bovine serum and 2% penicillin-streptomycin. They were seeded in six-well plates and incubated at 37 °C in humidified atmosphere containing 10% C02. Afier cells reached confluence, the media were replaced with 2 ml control medium (4% fatty-acid free bovine serum albumin, or BSA) or fatty acids (0.7 mM palmitate or oleate or Iinoleate with 4% BSA) and changed every 24 h. Experiments were conducted after 48 h of treatment. Cytotoxicity assay Same as in Chap 1. Membrane fluidity Same as in Chap 1. Liposome preparation and DSC measurement l6 To correlate the fluidity measurements to our computational studies, a Simpler model cell membrane also was used. Liposomes (multilamellar vesicles) were prepared by the thin film method according to the protocol fi'om Avanti Polar Lipids. The lipid 1,2-dioleoyl-sn-glycerO-3-phosphocholine (DOPC, Avanti Polar Lipids, Alabaster, AL) and fatty acid (palmitic acid, oleric acid or linolenic acid , Sigma-Aldrich, St. Louis, MO), obtained in chloroform stock solutions, were mixed in appropriate amounts in a glass tube. After vortexing, the solvent was dried under nitrogen. This formed a thin lipid film on the inside wall of the glass tube. The film was dried in a freeze-dryer to ensure complete evaporation of chloroform. Deionized water was added into the tube before it was placed in a bath sonicator for 10 min. Differential scanning calorimetry (DSC) analysis were performed on the liposomes samples at a scan rate of 1°C/min. Samples containing 20 mg/ml of lipid and 10 ,uL of liposome suspensions were used. DOPC was used in these experiments because its phase transition temperature (~—19°C) allowed us to obtain clean and clear DSC scans, whereas POPC (one of the lipids used in the simulations studies) has a phase transition temperature near the normal melting point of water (—2°C for POPC), which causes severe interference in Obtaining reliable data. Results The experimental results are divided into four sections: cytotoxicity, peroxide (H202), membrane fluidity, DSC measurements. Cytotoxicity and peroxide measurements are used to determine HepG2 cells viability after exposure to palmitate, oleate, or Iinoleate. Membrane fluidity is measured by EPR using stearic acid probes, 5-n-SASL l7 and 16-n-SASL embedded inside HepG2 cells. Lastly, phase transition study of DOPC Iiposome containing various concentrations of palmitate, oleate, and Iinoleate are measured by DSC. Cytotoxicity Measurements The level of cytotoxicity was measured by the relative amount of LDH released in the medium after exposure Of HepG2 cells with palmitate, oleate, or Iinoleate. The control consisted of HepGZ cells exposed to DMEM with 4% BSA alone. From Fig. 4, our measurements indicate that palmitate significantly increased the amount of LDH released, relative to the control. Oleate and Iinoleate did not induce toxic effect on HepG2 cells. I 60 50.2 BSA BSA+Palm BSA+OIea BSA+Lino FIGURE 4. HepG2 cells cytotoxicity in response to FFAS. Confluent HepGZ cells in Bovine serum albumin (BSA) medium were exposed to 0.7 mM palmitate, oleate, or Iinoleate. The LDH released was measured after 48 hrs. Error bars are standard deviation of three independent experiments. Peroxide Measurements 18 Relative to the amount of LDH released, we found a direct correlation between the amounts of H202 release into the medium. The amount H202 release after 48 hrs exposure of HepG2 to palmitate, oleate, or Iinoleate are shown in Fig. 5. The results suggested palmitate induced cell death by triggering cellular immune response. 60 * 45.3 .E 50 ” 0: ‘5? o. 40 — o: E S E 30 ‘ E, r zo— m 2 c a: 10 - 0.77 2.24 1,41 0: I 0 I BSA BSA+Palm BSA+OIea BSA+Lino FIGURE 5. Effects of FFAS on H202 release. Confluent HepG2 cells in Bovine serum albumin (BSA) medium were treated with 0.7 mM palmitate (Palm), oleate (Olea), or Iinoleate (Lino) for 48 hrs. The H202 released into the medium was measured and normalized to total cellular protein. Error bars are standard deviation of three independent experiments. The symbols * indicates statistical difference from control (p < 0.01). Membrane Fluidity Measurements Since typical FFAS are hydrophobic in nature, we investigated the non-specific cytotoxic effects due to their hydrophobicity. For this study, we investigated the changes in cellular membrane structure upon exposure to saturated and unsaturated FAS using EPR. The membrane fluidity of HepGZ cells were measured afier 48 hrs of exposure to palmitate, oleate, or Iinoleate. The control was HepG2 cells exposed to 19 DMEM with 4% BSA. Using both 5-n-SASL and 16-n-SASL as probes to monitor the ordering of the lipid tails near the lipid headgroups and the center of the bilayer core, we observed an increase in the S order parameter and peak height ratio for HepG2 cells exposed to palmitate, as shown in Fig. 6. No significant changes are observed for HepG2 cells exposed to either oleate or Iinoleate, in comparison to the control. The results suggested a grater reduction of membrane fluidity due to the hydrophobic effect of saturated FA than unsaturated FAS. 0.72 - a) * 0.702 5 0.70 "- ‘65 E ‘3 80%— E O “9 0.66 — 0.64 — BSA+Palm BSA+OIea BSA+Lino 20 P 01 I 4.29 :5 N I Peak height ratio (h0/h4) co 00 CD (0 I I .0) CD I BSA BSA+Palm BSA+OIea BSA+Lin0 FIGURE 6. Effect of FFAS exposure on cellular membrane fluidity. Cells were treated with 0.7 mM palmitate (Palm), oleate (Olea), or Iinoleate (Lino) for 48 hrs. The cellular membrane fluidity was measured using EPR. a) Values are order parameter for 5-n-SASL labeled HepG2 cells. b) Values are peak height ratio for 16-n-SASL labeled HepG2 cells. Error bars are standard deviation of three independent experiments. The symbols "' indicates statistical difference from control (p < 0.05) DSC Measurements To corroborate the membrane fluidity results, we measured the phase transition temperature of DOPC Iiposomes by DSC measurements. The DSC therrnographs for DOPC Iiposomes with varying mole fractions of palmitate, oleate, or Iinoleate are shown in Fig.7. The figure demonstrated a significant increase in the phase transition temperature of the DOPC Iiposomes with increasing concentration of palmitate. However, slight changes are Observed for DOPC Iiposome containing the same concentration of Oleate and Iinoleate. This suggests that only palmitate increase the ordering of the phospholipids in the Iiposomes, which correlates with the decrease in membrane fluidity measured by EPR. 21 -140 ~ A '15.0 7 9 E -16.0 4 a) j. c ,3 -170 - 0) C e l- - m -18.0 m to Z “L -190 ~ -20.0 0% 1% 5% 10% 15% 20% !_Palmtiate -_1_9,0 -18.7 ,, -18.1 -17.4 -16.7 '13.;‘L_. gggggb -19.1 -19.1 _ -19.2 -19.3 M -19.5 Mfi-1M9.§__ ILinoleate -18.9 -190 -19.1 -19.1 -19.2 -19.3 Mole Fraction of F FAs in DOPC Iiposome FIGURE 7 Effect of FFAs on phase transition temperature of DOPC Iiposome. Phase transition temperature of DOPC Iiposomes containing various concentrations of palmitate, oleate and linoleate(grey, white and black bar). The phase transition was measured with DSC. Error bars are standard deviation of four independent experiments. The symbols “*” indicates statistical difference from control (p < 0.01) Discussion Unlike most FFAS, palmitate has been shown to be very toxic to HepG2 cells at 0.7 mM. Unsaturated FFAS, on the other hand, have been shown to have both positive and negative effects among various cell types. We found from the cytotoxicity and peroxide measurements that Oleate and Iinoleate are not toxic to HepGZ cells at same concentration considered for palmitate. Our EPR measurements indicated that there is a significant change in membrane fluidity in the presence of palmitate, compared to Oleate and Iinoleate systems. This change is mainly associated with hydrophobic effect of saturated FA which resulted in reducing membrane fluidity. To compare the 22 biochemical and biophysical processes associate with the change in membrane fluidity in the presence of palmitate, oleate, or Iinoleate at a molecular level, we collaborate with Dr. Amadeu K. Sum and Sukit Leekumjom from Virginia Polytechnic Institute and State University, and they studied the effect of these FFAS on model cell membranes (DOPC lipid bilayers) using molecular dynamic simulations. (Chapter 3) 23 Chapter 3 Molecular dynamics Simulation (Dr. Amadeu K. Sum and Sukit Leekumjom from Virginia Polytechnic Institute and State University performed all the simulations discussed in this chapter) To provide insight into the biochemical and biophysical processes altered by the presence of palmitate, Oleate, or Iinoleate in HepG2 cells and to interpret these results from a molecular level, we collaborated with Dr. Amadeu K. Sum and Sukit Leekumjom from Virginia Polytechnic Institute and State University, and they studied the effect of FFAS and trehalose on model cell membranes (lipid bilayers) using molecular dynamic simulations. The lipid bilayers used here are equimolar l -palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine and l-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPC/POPE) bilayers with a total of 288 lipid molecules evenly distributed in each leaflet. This mixed bilayer was chosen for these studies because it represents the main phospholipid constituents of HepG2 cells (75). All simulations were performed at 310 K, by Dr. Amadeu K. Sum and Sukit Leekumjom with the GROMACS 3.3.1 software package in parallel using Virginia Tech's System X (dual 2.3 GHz Apple Xserve GS). Images in this chapter are presented in color. The initial stage of cell exposure to palmitate is modeled by introducing a single palmitate molecule in the aqueous phase of previously equilibrated bilayers with and without trehalose. Snapshots of the two systems at the start of the simulation are shown in Fig 8. F ig 8 b and d, show representative trajectories of palmitate along the simulation (trajectory is traced by the position of the central carbon atom in the palmitate tail). As shown in Fig 8, palmitate can penetrate the bilayer within the simulation time considered. Eight of the ten simulations resulted with palmitate in the bilayer and palmitate remained in the aqueous phase for the duration of the 24 simulations. For the simulations with trehalose, similar results were obtained. The observed penetration of palmitate in the bilayer is consistent with experimental studies that demonstrated that palmitate can be readily incorporate into the hydrophobic region of the bilayer (76,77). f'o’xl ‘4 fry} 5“ 7, Riv" Re C" a. '3 i ' l 411'. x h, a, -- T' . 17} it. t _/ '0' T, . Isa ' .“ 1"“. ' \u- ' \_\ 8- I N I Center of aqueous phase (nm) 0 4 F 1 l 1 L 1 5 10 15 20 Time (n8) ‘0 “3 . '- 7:9??? - ‘F- ‘s D. & Center of aqueous phase (nm) 0 FIGURE 8 Starting structure of POPC/POPE bilayer with one palmitate inserted into the aqueous phase. Bilayers are modeled (a) without and (c) with trehalose. Colored molecules are POPC/POPE headgroup (blue), lipid tails (red), water (gray), trehalose (green), and palmitate (cyan). The dynamics of palmitate, represented by the position of central carbon atom in its tail, are shown in panels b and (1. Blue horizontal lines correspond to the average position of the phosphorus atoms of POPC and POPE along the interface and are used to identify the interface. Gray area denotes the aqueous regions. The position 2 = 0 corresponds to middle of the aqueous phase. To investigate the protective role of trehalose on palmitate-induced toxicity, an extensive hydrogen-bond analysis was carried out to investigate the interactions 25 between lipids, trehalose, and palmitate. [See previous publication (78) for details] The observations led us to conclude that palmitate, a hydrophobic molecule, prefers to penetrate the bilayer through hydrophobic regions. And trehalose has the ability to modify the bilayer surface (79, 80), creating large hydrophobic regions exposed to the aqueous phase. The results also demonstrates the dual role of trehalose: on the bilayer surface, trehalose can alter the H-bond distribution, thus inducing hydrophobic regions for palmitate to penetrate the bilayer, while in the aqueous phase, trehalose can interact with palmitate and prevent it fi'om approaching the bilayer surface. These two competing processes help us to understand why the experimental measurements have shown that trehalose at high concentrations (>O.13 ‘mM) is detrimental to HepG2 cells. At high trehalose concentrations, the bilayer surface is significantly modified by trehalose such that hydrophobic regions are more accessible for palmitate to penetrate the bilayer. From the Simulation, we found single palmitate can penetrate the bilayer. However, attempts to model multiple palmitate molecule dynamics was not successful. Palmitate molecules aggregate, as shown in Fig 9, due to the hydrophobic/hydrophilic interactions. The aggregation reduces the driving force for palmitate to penetrate the bilayer. To investigate effects of palmitate on bilayer, model bilayers with palmitate embedded in them were created. 26 o ' - 1' I ' . ' «”‘Al ‘ .' .’ ’ 7'." I 1"" - 1 .1 .‘ . ~ "I ‘ . r' 1‘ I . 4— _- f .3 -' "i 3:33-44 5“ (’I 7*, ' ' Jg’é‘ "4 A - . «\“Ii’wcwfl‘sfgfi‘fi- it“ A b 4.. ’\ , Figure 9: Snapshot of palmitate aggregation in the aqueous phase. The colored groups correspond to the DPPC headgroups (blue), lipid tails (light gray), palmitate (red/dark gray), and water (pink). Fig 10 shows the changes to the bilayer structure caused by the addition of palmitate for the cases where the bilayer freely expands and remains constrained as palmitate is embedded in the bilayer. To mimic the local effect of palmitate embedded in the bilayer, the lateral expansion of the bilayer was constrained. As shown in Fig 100, straight lipid tails with tilted arrangements are Observed at higher palmitate concentrations. This is related to the ordered lipid phase, which has been shown to be detrimental to cells by limiting their transport activities (81, 82), binding sites for pathogens and toxins (83-85), and possibly the cause of palmitate-induced toxicity. As the palmitate concentration decreases, the arrangement of the lipid tails become more random as observed in Fig 10a, thus restoring the bilayer to its normal structure. 27 a) Normal bilayer . b) Membrane swelling (1 Lipid order phase FIGURE 10 Snapshots of bilayer structures with (44 mol %) and without palmitate. (a) No palmitate is embedded in the bilayer. (b) The bilayer is allowed to expand as more palmitate molecules are embedded in the bilayer. (c) The bilayer is constraint in the lateral directions as more palmitate molecules are embedded in the bilayer. Colored molecules are POPC headgroup (blue), POPE headgroup (green), lipid tails (silver), water (red), and palmitate (brown). As seen from Fig 10, the increase in the ordering of the lipid tails is related to the mixing of lipid and fatty acid components, where straight chain fatty acid exhibits higher order parameters. Since the ordering Of the lipid tails is directly related to the phase transition, the simulation results agree well with the DSC measurements for DOPC Iiposomes containing palmitate, EPR measurements of HepG2 cells exposed to palmitate (Chap 1&2), all of which Showed an increase in the phase-transition temperature with increasing palmitate concentration. Palmitate has been Shown to be very toxic to HepG2 cells. Unsaturated FAS, on the other hand, are not toxic. To obtain a better understanding on how unsaturated FA interacts with the lipid bilayers in comparison to the effect induced by saturated FA, hydrogen bonding was analyzed to characterize the effect of unsaturated FAS (oleate and Iinoleate) on the properties of DOPC bilayers. The goal was to investigate the effect Of lipid hydration with increasing FA concentrations. Using the hydrogen bond analysis previously described by Brady and Schmidt (86) with the first hydration 28 cut-off from RDFs, Fig. 11 Shows the average number of hydrogen bonds per lipid between lipid oxygen atoms and water for all systems considered. As seen in the figure, the average number of hydrogen bonds reduces significantly with increasing palmitate concentrations. This is because the increase in lipid packing resulted in the removal of potential binding sites for water. On the other hand, the number of hydrogen bonds for oleate systems remains relatively the same regardless of the oleate or Iinoleate concentrations. This is related to fact that oleate and Iinoleate can reduce the packing between lipids, thus maintaining the suitable area per lipid and the level of hydration. From this analysis, we confirm that the role of saturated and unsaturated fatty acid are very different in that unsaturated FA induced less change in the bilayer structure and help maintain the level of hydration. 7.04 ~ F" 6.96 £ 3; 7 g, r f r f i 6.88 . 6.80 i I I 0 5 10 15 20 25 FA concentration (mole%) H-bond/ lipid Figure 11. Average number of hydrogen bonds per lipid for bilayers with palmitate (circles), oleate (square) and Iinoleate (triangle); water as H-donors. Solid, dotted, and dash lines are drawn to guide the eye, respectively. Error bars represent standard deviations. 29 Discussion Modification of the membrane lipid composition may alter the membrane fluidity and in turn affect cellular function (87, 88). As palmitate molecules are embedded within the membrane, it is observed from the EPR measurements that the membrane fluidity is Significantly decreased. This phenomenon can be explained by many factors. First, palmitate is hydrophobic in nature and by exposing it to cell membranes, palmitate is most likely dissolving into the membrane, thus reducing the membrane fluidity. Second, as palmitate can be metabolized into phospholipid components of cell membranes, these additional components can cause an increase in the packing between the lipids, consequently decreasing the membrane fluidity (87,88). Last, since H202 and *OH are present in cultured cells exposed to palmitate, it has been reported that unsaturated phospholipids are oxidized into fragment of saturated hydrocarbons with various headgroup functionalities, some of which are highly toxic to cells (89-92). Although, the oxidation of unsaturated lipids generally results in an increase in fluidity and permeability Of the membrane (93-95), the remaining fi'agments inside the membrane, which are hydrophobic in nature, can reduce the membrane fluidity. In this study, we found that palmitate decreased the cellular membrane fluidity of HepG2 cells. This was expected, Since others have shown that fatty acids incorporated into the membrane disrupted the bilayer structure and changed the lipid phase-transition temperature (76,77). We have also observed increasing the concentration of palmitate increases the phase-transition temperature of DOPC. 3O Conclusions and Future work We performed a series of experimental and computational measurements to gain insight into how trehalose interacts with HepG2 cells in the presence of palmitate, and the different effects Of saturated and unsaturated fatty acids on HpeG2 cells. Experimentally, we found that healthy HepG2 cells exposed to palmitate resulted in a significant amount of LDH and H202 released into the medium, indicating cell death or compromised cellular membrane. However, cells exposed to Oleate and Iinoleate did not Show cell damage. Furthermore, it is observed fi'om EPR measurements that the membrane fluidity is significantly decreased in the presence of palmitate, while fluidity is not significantly changed in the presence of oleate and Iinoleate. The leading hypotheses for the observed results are: l. Palmitate dissolves into the membrane, thus reducing the membrane fluidity. 2. Palmitate metabolizes into phospholipid components of cell membranes, thus increasing the packing between the lipids. 3. The remaining fragments of oxidized lipids inside the membrane (oxidized by H202 and *OH), which are hydrophobic in nature, reduce the membrane fluidity. The simulation is aimed at interpreting and understanding the experimental results, providing knowledge at the molecular level into the role of fatty acids and trehalose in the toxicity of HepG2 cells. As illustrated by the results, the computation analyses confirmed that palmitate can dissolve into the bilayers within a short time. As the 31 palmitate concentration in the bilayer increased, it forces the surrounding lipid molecules to become highly packed, resulting in a more ordered structure. The local effect of palmitate embedded in the bilayer was also considered. The simulation results yielded a highly order bilayer structure with the lipid tails in a tilted arrangement. These results agreed well with DSC measurements for DOPC Iiposomes containing palmitate and EPR measurements of HepG2 cells exposed to palmitate. Furthermore, we verified that the direct interactions of trehalose and palmitate in the medium through hydrogen bonding potentially hinder palmitate from dissolving into the bilayer. The binding of palmitate to trehalose seems beneficial to cell membranes; however, we have also discovered that trehalose can potentially modify the bilayer surface by altering the surface hydrogen-bond distribution, thus inducing hydrophobic regions for palmitate to penetrate the bilayer. We confirmed that the role of saturated and unsaturated fatty acid are very different in that unsaturated FA induced less change in the bilayer structure and help maintain the level of hydration. We have demonstrated a potential mechanism by which palmitate incorporates into the bilayer. We further hypothesize that palmitate can aggregate in lipid bilayer to form small domains, and possibly pores. However, due to the limited time scale of simulation, we were not able to Observe significant diffusion of palmitate in bilayer. To get evidence for aggregation, we can use fluorescence resonate energy transfer (FRET). Fatty acids and phospholipids would be tagged covalently with optical donor and acceptor chromophores. A time correlated single photon counting system can be used to measure the fluorescence lifetime of donor and acceptor incorporated in the 32 Iiposome. Aggregation would be seen as a deviation from the predictions of the Forster model for a random distribution of the chromophores. Understanding the mechanism Of saturated fatty acid-induced hepatocyte toxicity may provide insight into cures for diseases such as obesity-associated cirrhosis. 33 References I. Clandinin, M. T., S. Cheema, C. J. Field, M. L. Garg, J. Venkatraman, and T. R. Clandinin. 1991. Dietary fat: exogenous determination of membrane structure and cell function. FASEB J. 5:2761—2769. 2. Galli, C., and F. Marangoni. 1997. Recent advances in the biology of n—6 fatty acids. Nutrition. 13:978-985. 3. Yarnashita, A., T. Sugiura, and K. Waku. 1997. Acyltransferases and transacylases involved in fatty acid remodeling Of phospholipids and metabolism of bioactive lipids in mammalian cells. J. Biochem. (Tokyo). 122:1—16. 4. Andrade, L. N., T. M. de Lima, R. Curi, and A. M. Castrucci. 2005. Toxicity of fatty acids on murine and human melanoma cell lines. Toxicol. In Vitro. 19:553—560. 5. Lima, T. M., C. C. Kanunfre, C. Pompeia, R. Verlengia, and R. Curi. 2002. Ranking the toxicity of fatty acids on J urkat and Raji cells by flow cytometric analysis. Toxicol. In Vitro. 16:741—747. 6. Maedler, K., G. A. Spinas, D. Dyntar, W. Moritz, N. Kaiser, and M. Y. Donath. 2001. Distinct effects of saturated and monounsaturated fatty acids on B-cell turnover and firnction. Diabetes. 50:69—76. 7. El-Assaad, W., J. Buteau, M. L. Peyot, C. Nolan, R. Roduit, S. Hardy, E. Joly, G. Dbaibo, L. Rosenberg, and M. Prentki. 2003. Saturated fatty acids synergize with elevated glucose to cause pancreatic B-cell death. Endocrinology. 144:4154—4163. 8. Kong, J. Y., and S. W. Rabkin. 2000. Palmitate-induced apoptosis in cardiomyocytes is mediated through alterations in mitochondria: prevention by cyclosporin A. Biochim. Biophys. Acta Mol. Cell Biol. L. 1485:45—55. 9. Sparagna, G. C., D. L. Hickson-Bick, L. M. Buja, and J. B. McMillin. 2000. A metabolic role for mitochondria in palmitate-induced cardiac myocyte apoptosis. Am. J. Physiol. Heart C. 279:H2124—H2132. 10. Dashti, N., Q. Feng, and F. A. Franklin. 2000. Long-terrn effects of cis and trans monounsaturated (18:1) and saturated (16:0) fatty acids on the synthesis and secretion Of apolipoprotein A-1- and apolipoprotein B-containing lipoproteins in HepG2 cells. J. Lipid Res. 41:1980—1990. 11. Ji, J., L. Zhang, P. Wang, Y. M. Mu, X. Y. Zhu, Y. Y. Wu, H. Yu, B. Zhang, S. M. Chen, and X. Z. Sun. 2005. Saturated free fatty acid, palmitic acid, induces apoptosis in fetal hepatocytes in culture. Exp. Toxicol. Pathol. 56:369—376. 34 12. Srivastava, S., and C. Chan. 2007. Hydrogen peroxide and hydroxyl radicals mediate palmitate-induced cytotoxicity to hepatoma cells: relation to mitochondrial permeability transition. Free Radic. Res. 41 :38—49. 13. Listenberger, L. L., X. Han, S. E. Lewis, S. Cases, R. V. Farese, Jr., D. S. Ory, and J. E. Schaffer. 2003. Triglyceride accumulation protects against fatty acid-induced Iipotoxicity. Proc. Natl. Acad. Sci. USA. 100:3077—3082. l4. Dobrzyn, A., and J. M. Ntarnbi. 2005. The role of stearoyl-COA desaturase in the control of metabolism. Prostaglandins Leukot. Essent. Fatty Acids. 73:35—41. 15. Borradaile, N. M., X. Han, J. D. Harp, S. E. Gale, D. S. Ory, and J. E. Schaffer. 2006. Disruption of endoplasmic reticulum structure and integrity in Iipotoxic cell death. J. Lipid Res. 47:2726—2737. 16. Alexander, J. J ., A. Snyder, and J. H. Tonsgard. 1998. Omega-oxidation of monocarboxylic acids in rat brain. Neurochem. Res. 23:227—233. 17. Sanders, R. J., R. Ofman, F. Valianpour, S. Kemp, and R. J. Wanders. 2005. Evidence for two enzymatic pathways for w-oxidation Of dodecanoic acid in rat liver microsomes. J. Lipid Res. 46:1001—1008. l8. Listenberger, L. L., D. S. Ory, and J. E. Schaffer. 2001. Palmitate-induced apoptosis can occur through a cerarnide-independent pathway. J. Biol. Chem. 276: 14890—14895. 19. Lu, Z.-H., Y.-M. Mu, B.-A. Wang, X.-L. Li, J.-M. Lu, J.-Y. Li, C.-Y. Pan, T. Yanase, and H. Nawata. 2003. Saturated free fatty acids, palmitic acid and stearic acid, induce apoptosis by stimulation of ceramide generation in rat testicular Leydig cell. Biochem. Biophys. Res. Commun. 303: 1002—1007. 20. Goodman, D. S. 1958. The interaction of human erythrocytes with sodium palmitate. J. Clin. Invest. 37:1729—1735. 21. Spector, A. A. 1975. Fatty acid binding to plasma albumin. J. Lipid Res. 16:165—179. 22. Pande, S. V., and J. F. Mead. 1968. Inhibition of enzyme activities by free fatty acids. J. Biol. Chem. 243:6180—6185. 23. Reaven, P., S. Parthasarathy, B. J. Grasse, E. Miller, F. Almazan, F. H. Mattson, J. C. Khoo, D. Steinberg, and J. L. Witztum. I991. Feasibility of using an oleate-rich diet to reduce the susceptibility of low-density lipoprotein to oxidative modification in humans. Am. J. Clin. Nutr. 54:701—706. 35 24. Hart, C. M., M. P. Gupta, and V. Evanoff. 1997. Oleic acid reduces oxidant stress in cultured pulmonary artery endothelial cells. Exp. Lung Res. 23:405—425. 25. Toborek, M., Y. W. Lee, R. Garrido, S. Kaiser, and B. Hennig. 2002. Unsaturated fatty acids selectively induce an inflammatory environment in human endothelial cells. Am]. Clin. Nutr. 75:119-125. 26. Li, Z., S. Srivastava, S. Mittal, X. Yang, L. Sheng, and C. Chan. 2007. A three stage integrative pathway search (TIPS) framework to identify toxicity relevant genes and pathways. BMC Bioinforrnatics. 8:202. 27. Kinter, M., D. R. Spitz, and R. J. Roberts. 1996. Oleic acid incorporation protects cultured hamster fibroblasts from oxygen-induced cytotoxicity. J. Nutr. 126:2952—2959. 28. Natali, F., L. Siculella, S. Salvati, and G. V. Gnoni. 2007. Oleic acid is a potent inhibitor of fatty acid and cholesterol synthesis in c6 glioma cells. J. Lipid Res. 48:1966—1975. 29. Crowe, J. H., L. M. Crowe, and S. A. Jackson. 1983. Preservation of structural and functional activity in lyophilized sarcoplasmic reticulum. Arch. Biochem. Biophys. 220:477—484. 30. Crowe, J. H., L. M. Crowe, and D. Chapman. 1984. Preservation of membranes in anhydrobiotic organisms: the role Of trehalose. Science. 223:701—703. 31. Leslie, S. B., E. Israeli, B. Lighthart, J. H. Crowe, and L. M. Crowe. 1995. Trehalose and sucrose protect both membranes and proteins in intact bacteria during drying. Appl. Environ. Microbiol. 61 :3592—3597. 32. Wolkers, W. F., N. J. Walker, F. Tablin, and J. H. Crowe. 2001. Human platelets loaded with trehalose survive freeze-drying. Cryobiology. 42:79—87. 33. Elbein, A. D., Y. T. Pan, 1. Pastuszak, and D. Carroll. 2003. New insights on trehalose: a multifunctional molecule. Glycobiology. 13:17r—27r. 34. Chen, Q., and G. G. Haddad. 2004. Role of trehalose phosphate synthase and trehalose during hypoxia: from flies to mammals. J. Exp. Biol. 207:3125—3129. 35. Oku, K., M. Kurose, M. Kubota, S. Fukuda, M. Kurimoto, Y. Tujisaka, A. Okabe, and M. Sakurai. 2005. Combined NMR and quantum chemical studies on the interaction between trehalose and dienes relevant to the antioxidant function of trehalose. J. Phys. Chem. B. 109:3032—3040. 36 36. Herdeiro, R. S., M. D. Pereira, A. D. Panek, and E. C. A. Eleutherio. 2006. Trehalose protects Saccharomyces cerevisiae from lipid peroxidation during oxidative stress. Biochim. Biophys. Acta Gen. Subj. 1760:340—346. 37. Benaroudj, N., .D. H. Lee, and A. L. Goldberg. 2001. Trehalose accumulation during cellular stress protects cells and cellular proteins from damage by oxygen radicals. J. Biol. Chem. 276:24261—24267. 38. Cirelli, N., P. Lebrun, C. Gueuning, J. Delogne-Desnoeck, A.-M. Vanbellinghen, G. Graff, and S. Meuris. 2001. Physiological concentrations of albumin stimulate chorionic gonadotrophin and placental lactogen release fi'om human term placental explants. Hum. Reprod. 16:441—448. 39. Boden, G., X. Chen, E. Capulong, and M. Mozzoli. 2001. Effects of free fatty acids on gluconeogenesis and autoregulation of glucose production in type 2 diabetes. Diabetes. 50:810—816. 40. Mensink, M., E. E. Blaak, M. A. van Baak, A. J. Wagenmakers, and W. H. Saris. 2001. Plasma free fatty acid uptake and oxidation are already diminished in subjects at high risk for developing type 2 diabetes. Diabetes. 50:2548—2554. 41. Skowronski, R., C. B. Hollenbeck, B. B. Varasteh, Y. D. Chen, and G. M. Reaven. 1991. Regulation of non-esterified fatty acid and glycerol concentration by insulin in normal individuals and patients with type 2 diabetes. Diabet. Med. 8:330—333. 42. Woerle, H. J ., E. Popa, J. Dostou, S. Welle, J. Gerich, and C. Meyer. 2002. Exogenous insulin replacement in type 2 diabetes reverses excessive hepatic glucose release, but not excessive renal glucose release and impaired free fatty acid clearance. Metabolism. 51:1494—1500. 43. Haak, R. A., L. M. Ingraham, R. L. Baehner, and L. A. Boxer. 1979. Membrane fluidity in human and mouse Chediak-Higashi leukocytes. J. Clin. Invest. 64:138—144. 44. Squier, T. C., D. J. Bigelow, and D. D. Thomas. 1988. Lipid fluidity directly modulates the overall protein rotational mobility of the Ca-ATPase in sarcoplasmic reticulum. J. Biol. Chem. 263:9178—9186. 45. Tsuda, K., Y. Kinoshita, K. Kimura, I. Nishio, and Y. Masuyama. 2001. Electron paramagnetic resonance investigation on modulatory effect of I7B-estradiol on membrane fluidity of erythrocytes in postmenopausal women. Arterioscler. Thromb. Vasc. Biol. 21:1306—1312. 37 46. Kuo, P., M. Weinfeld, and J. Loscalzo. 1990. Effect of membrane fatty acyl composition on LDL metabolism in HepG2 hepatocytes. Biochemistry. 29:6626—6632. 47. Sum, A. K., R. Faller, and J. J. de Pablo. 2003. Molecular simulation study of phospholipid bilayers and insights Of the interactions with disaccharides. Biophys. J. 85:2830—2844. 48. Pereira, C. S., R. D. Lins, I. Chandrasekhar, L. C. G. Freitas, and P. H. Htinenberger. 2004. Interaction of the disaccharide trehalose with a phospholipid bilayer: a molecular dynamics study. Biophys. J. 86:2273—2285. 49. Villarreal, M. A., S. B. Diaz, E. A. Disalvo, and G. G. Montich. 2004. Molecular dynamics simulation study of the interaction Oftrehalose with lipid membranes. Langmuir. 20:7844—785 1. 50. Doxastakis, M., A. K. Sum, and J. J. de Pablo. 2005. Modulating membrane properties: the effect of trehalose and cholesterol on a phospholipid bilayer. J. Phys. Chem. B. 109:24173—24181. 51. Pereira, C. S., and P. H. Hunenberger. 2006. Interaction of the sugars trehalose, maltose and glucose with a phospholipid bilayer: a comparative molecular dynamics study. J. Phys. Chem. B. 110:15572—15581. 52. Leekumjom, S., and A. K. Sum. 2006. Molecular investigation of the interactions Oftrehalose with lipid bilayers of DPPC, DPPE and their mixture. Mol. Simul. 32:219—230. 53. Rudolph, A. S., and J. H. Crowe. 1985. Membrane stabilization during freezing: the role of two natural cryoprotectants, trehalose and proline. Cryobiology. 22:367—377. 54. Unger, R. H., and Y. T. Zhou. 2001. Lipotoxicity of B-cells in Obesity and in other causes Of fatty acid spillover. Diabetes. 50(Suppl 1):SI 18—8121. 55. Galli, C.; Marangoni, F. Nutrition 1997, 13, 978—985. 56. Yamashita, A.; Sugiura, T.; Waku, K. J. Biochem.-Tokyo 1997, 122, 1—16. 57. Mattson, F. H.; Grundy, S. M. Journal of Lipid Research 1985, 26, 194—202. 58. Rudel, L. L.; Haines, J. L.; Sawyer, J. K. Journal of Lipid Research 1990, 31, 1873—82. 59. Nydahl, M. C.; Gustafsson, I. B.; Vessby, B. American Journal Of Clinical Nutrition 1994, 38 59, 115—22. 60. Gardner, C. D.; Kraemer, H. C. Arteriosclerosis Thrombosis and Vascular Biology 1995, 15,1917—27. 61. Saifer, A.; Goldman, L. J. Lipid Res. 1961, 2, 268—270. 62. Spector, A. A. J. Lipid. Res. 1975, 16, 165—79. 63. El-Assaad,W.; Buteau, J.; Peyot, M. L.; Nolan, C.; Roduit, R.; Hardy, S.; Joly, E.; Dbaibo, G.;Rosenberg, L.; Prentki, M. Endocrinology 2003, 144, 4154—63. 64. Andrade, L. N.; de Lima, T. M.; Curi, R.; Castrucci, A. M. Toxicol. In Vitro 2005, 19, 553—60. 65. Ji, J.; Zhang, L.; Wang, P.; Mu, Y. M.; Zhu, X. Y.; Wu, Y. Y.; Yu, H.; Zhang, B.; Chen, S. M.;Sun, X. Z. Exp. Toxicol. Pathol. 2005, 56, 369—76. 66. Srivastava, S.; Chan, C. Free Radic. Res. 2007, 41, 38—49. 67. Sunamoto, J .; Baba, Y.; Iwamoto, K.; Kondo, H. Biochim. Biophys. Acta 1985, 833, 144—50. 68. Lee, C.; Barnett, J.; Reaven, P. D. J. Lipid. Res. 1998, 39, 1239—1247. 69. Samuni, A. M.; Lipman, A.; Barenholz, Y. Chem. Phys. Lipids 2000, 105, 121—34. 70. Hyv"onen, M. T.; Oomi, K.; Kovanen, P. T.; Ala-Korpela, M. Biophy. J. 2001, 80, 565—578. 71. Watabe, N.; lshida, Y.; Ochiai, A.; Tokuoka, Y.; Kawashima, N. J. Oleo. Sci. 2007, 56, 73-80. 72. Chen, T.; Acker, J. P.; Eroglu, A.; Cheley, S.; Bayley, H.; Fowler, A.; Toner, M. Cryobiology2001, 43, 168—81. 73. Awad, A. B.; Spector, A. A. Biochim Biophys Acta-Biomembranes 1976, 426, 723—31. 74. Burns, C. P.; Luttenegger, D. G.; Dudley, D. T.; Buettner, G. R.; Spector, A. A. Cancer. Res.l979, 39, 1726—32. 75. Kuo, P., M. Weinfeld, and J. Loscalzo. 1990. Effect of membrane fatty acyl composition on LDL metabolism in HepG2 hepatocytes. Biochemistry. 29:6626—6632. 39 76. Eliasz, A. W., D. Chapman, and D. F. Ewing. I976. Phospholipid phase transitions. Effects of n-alcohols, n-monocarboxylic acids, phenylalkyl alcohols and quaternary ammonium compounds. Biochim. Biophys. Acta. Biomembranes. 448:220—230. 77. Mabrey, S., and J. M. Sturtevant. 1977. Incorporation of saturated fatty acids into phosphatidylcholine bilayers. Biochim. Biophys. Acta Lipids Lipid Metabol. 486:444—450. 78. Leekumjom, 8.; Wu, Y. F.; Sum, A. K.; Chan, C. Biophys. J. 2008, 94, 2869—2883 79. Skibinsky, A., R. M. Venable, and R. W. Pastor. 2005. A molecular dynamics study of the response of lipid bilayers and monolayers to trehalose. Biophys. J. 89:4111—4121. 80. Venable, R. M., A. Skibinsky, and R. W. Pastor. 2006. Constant surface tension molecular dynamics simulations of lipid bilayers with trehalose. Mol. Simul. 32:849-855. 81. Thilo, L., H. Trauble, and P. Overath. 1977. Mechanistic interpretation of influence of lipid phase-transitions on transport functions. Biochemistry. 16:1283—1290. 82. Welti, R., D. A. Rintoul, F. Goodsaid-Zalduondo, S. Felder, and D. F. Silbert. 1981. Gel phase phospholipid in the plasma membrane of steroI-depleted mouse LM cells. Analysis by fluorescence polarization and x-ray diffraction. J. Biol. Chem. 256:7528—7535. 83. Herreros, J., T. Ng, and G. Schiavo. 2001. Lipid rafts act as specialized domains for tetanus toxin binding and internalization into neurons. Mol. Biol. Cell. 12:2947—2960. 84. Fantini, J ., N. Garmy, R. Mahfoud, and N. Yahi. 2002. Lipid rafts: structure, function and role in HIV, Alzheimer's and prion diseases. Expert Rev. Mol. Med. 2002: 1—22. 85. Lafont, F., and F. G. van der Goot. 2005. Bacterial invasion via lipid rafts. Cell. Microbiol. 7:613-620. 86. Brady, .1. W.; Schmidt, R. K. J. Phys. Chem. 1993, 97, 958—966. 87. Awad, A. B., and A. A. Spector. 1976. Modification of the fatty acid composition of Ehrlich ascites tumor cell plasma membranes. Biochim. Biophys. Acta Biomembr. 426:723—73 1. 40 88. Burns, C. P., D. G. Luttenegger, D. T. Dudley, G. R. Buettner, and A. A. Spector. 1979. Effect of modification of plasma membrane fatty acid composition on fluidity and methotrexate transport in L1210 murine leukemia cells. Cancer Res. 39:1726—1732. 89. Girotti, A. W. 1998. Lipid hydroperoxide generation, turnover, and effector action in biological systems. J. Lipid Res. 39:1529—1542. 90. Aldini, G., P. Granata, M. Orioli, E. Santaniello, and M. Carini. 2003. Detoxification of 4-hydroxynonenal (HNE) in keratinocytes: characterization of conjugated metabolites by liquid chromatography/electrospray ionization tandem mass spectrometry. J. Mass Spectrom. 38:1160—1168. 91. Hoff, H. F., J. O'Neil, Z. P. Wu, G. Hoppe, and R. L. Salomon. 2003. Phospholipid hydroxyalkenals—biological and chemical properties of specific oxidized lipids present in atherosclerotic lesions. Arterioscler. Thromb. Vasc. 23:275—282. 92. Reis, A., M. R. Domingues, F. M. Amado, A. J. Ferrer-Correia, and P. Domingues. 2005. Separation of peroxidation products of diacyl-phosphatidylcholines by reversed-phase liquid chromatography-mass spectrometry. Biomed. Chromatogr. 19:129—137. 93. Chatterjee, S. N., and S. Agarwal. I988. Liposomes as membrane model for study of lipid peroxidation. Free Radic. Biol. Med. 4:51—72. 94. Goldstein, R. M., and G. Weissmann. 1977. Effects of the generation of superoxide anion on permeability of liposomes. Biochem. Biophys. Res. Commun. 75:604—609. 95. Mandal, T. K., and S. N. Chatterjee. 1980. Ultraviolet- and sunlight-induced lipid peroxidation in liposomal membrane. Radiat. Res. 83:290—302. 96. Kunimoto, M., K. Inoue, and S. Nojima. 1981. Effect of ferrous ion and ascorbate-induced lipid peroxidation on liposomal membranes. Biochim. Biophys. Acta. 646: 169—178. 41 O 6 u \. O 6 . . O .6 O a i o r r . A I, l 5.1 6 III .ll 1. 1 . NH! ' .. M I. AL . .l.i. O— ' 6 81' .. L...l.HH 8 6 111.. V Ill 60 In .6 $111+ 6 .. H I 1.5 . Ell! .o. W 11.9 u 11'9— 01' . 0. ll! 0 I rrli .llll J I!!! . 6 M Ilhil u I AV .0 S III . i 9 I . J I ’1‘ ,. t 1 AL I l .{r .- I, . 1 . L. .r.\, O I. 6 M6 .. 6. .6 s D . OI .« _.6 . _. ,_ 0 v. 6 V. 6 O A .I .l . . . f ,6 .I . | J a #553‘fiiriqenni'fifleclrglgsu“O:r "tr"- wvv'nglawn-nun... nu».- .,6,.. .- w . . . 6.6 ..... ~ 0.. .. .6. . ...6. 6... . . .6 1 . 6 .... 6 ... .fi. . 93~6u6~.c.nr.....6r... . . .. I 6.. 0 . . 6 . 6 6 6 6.. . 6 6. . . 6 . . . 6 . . . . 6 . . .. . . 6 1 ... . . . . . 6 . . . . . 6 6 .. 6 .. . . 6 . 6 . . on . u . . . 6 6 6 6 6. . I .6 \a . 6 . .. .66 I 6. . . O 6 l a e l b O C I. 6 . 6 . 6 6 .6 v. 6 6 . 6. 6.6 . v 6 6 . . 6. . . . 6 . 6.66 . 6 . . . . . . . a .6 I 6 Q 6 I . 6 . . 6 .6 . 6.. . . .. . . . . . . 6 .6 6 o . . o . 6 o. I 6 6 I 6 O I o . 6 n U . 66 6 . . a 6 6 . o. . . . 6 6 6 . . 66 . 6 l .. 6 . I . .6ou 6 6 6 D 6 I O A 0 I 6 6 I6 6 .6.- . .. 6 . . . .60 .6. 6 6.6 . .6. 6... . 6 . . .. ..6 . o6 ..66.6.666.u. ..6.6..o. l... . 6 6 6 . . . \66 . e . . 6.. 6 6 .. . . . 6 6.. . . . . 6 6 6 . 6 . . . . . 6 ... . . . 6 . .. . . . .. .60.t . . . 6 I . ..\ . 6 .. . . 6 . . . . . 6 6. .6 .0 66 . 6 . 6 . .6‘. 6 u 66 . .6v. . 6 n . .. . .. . o . we. ... l6 . I .. .. . . 6 .66 6 . ..6 . t . I. a . . . ... ...6. .6v \ 6 . .... .6._ .9. o. :6 . ... .. ... .\.. ... . .. .6 .1. ..o . 6 66 .. 6.6.66. 6 6D. .e..l I . . . . .6 . . 6 6 . I , . 6 . . .0... .1. .‘.~ 6 o 63.6... ..'.‘.6‘.\.Pl6r r66066._'.. . .66...6...6 6\.I..6...QQ. . . 6 . . . . . . m. 6 6 6 6 . a O . .66..660.I . Ihu"6lQ 6 30.85. 6 .6 . 6 a -2... . . .6 6.6 6.. . .. . . 6.. 6 6 663(36.\l\66...¢ 6. .4. .466. 6 . to I. b I . .6! - :v 13.3633... 6 5.6.! ‘ . . ..6 a . . . 6.66.13.21.58. .. :l‘ . \.6...l6.‘ .9..- . 6 . .6 . ...6 I . 6 .. . . 6 .6 _ 6 . 6. . 6 ISwYQtf‘IQD :- 6 6.0.6:...4.I.V‘..e.’366.!66. . . 6.16-)! a. . . . . O O 6 . .6 1‘ 6.6.6.3.? 0' .1 4.04‘u6’... U I 6 . O . . . . . "G‘Q'I369X6. .i.\. . P.."al.h66 33.}6 7:66..- \O’t.§‘ ‘66~'.....16...il 673.616.‘.6.6\.s, .53....06 6 . . . . . . . .. . .I 6‘ 6 . . . . . . .. . . . . . o . 6...... 0‘66). . I . h . . . . . .