On the evolution of mutation bias in digital organisms
         Mutation is one of the primary drivers of genetic change. In this work I study mutation biases, which are sets of different genetic-state inflow probabilities. Mutation biases have the potential to change the composition of genomes over time, leading to divergent short- and long-term evolutionary outcomes. I use digital organisms, self-replicating computer programs, to explore whether or not mutation biases are capable of altering the long-term adaptive behavior of populations; whether mutation biases can be competitive traits; and whether mutation biases can evolve. I find that mutation biases can alter the long-term adaptive behavior of mutation bias-obligate populations in terms of both mean fitness and complex trait evolution. I also find that mutation biases can compete against one another under a variety of conditions, meaning mutation bias can selectable over relatively-short periods of time. The competitive success of a mutation bias does not always depend upon the presence of beneficial mutations, implicating an increase in the probability of neutral mutations as a sufficient mechanism for bias selection. Finally, I demonstrate that by giving organisms a mutable mutation bias allele, populations preferentially evolve to possess specific biases over others. Overall, this work shows that mutation bias can act as a selectable trait, influencing the evolution of populations with regard to both their internal-genetic and external environments.
    
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- In Collections
 - 
    Electronic Theses & Dissertations
                    
 
- Copyright Status
 - In Copyright
 
- Material Type
 - 
    Theses
                    
 
- Authors
 - 
    Rupp, Matthew
                    
 
- Thesis Advisors
 - 
    Torng, Eric K.
                    
Ofria, Charles A.
 
- Committee Members
 - 
    Schmdit, Thomas M.
                    
Punch, William
 
- Date Published
 - 
    2011
                    
 
- Subjects
 - 
    Evolution (Biology)--Computer simulation
                    
Mutation (Biology)
Computer simulation
Research
Life (Biology)
Design
 
- Program of Study
 - 
    Computer Science
                    
 
- Degree Level
 - 
    Doctoral
                    
 
- Language
 - 
    English
                    
 
- Pages
 - xv, 104 pages
 
- ISBN
 - 
    9781124844251
                    
1124844252
 
- Permalink
 - https://doi.org/doi:10.25335/q0x2-6f81